Wall clock time and date at job start Tue Mar 31 2020 22:26:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86806 * 119.99825 * 2 1
4 4 H 1.48504 * 109.46857 * 180.02562 * 3 2 1
5 5 H 1.48491 * 109.47148 * 300.00407 * 3 2 1
6 6 H 1.48500 * 109.46844 * 60.00479 * 3 2 1
7 7 C 1.37878 * 120.00258 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00051 * 179.97438 * 7 2 1
9 9 S 1.76201 * 119.99919 * 359.97438 * 7 2 1
10 10 O 1.42095 * 106.40351 * 293.54173 * 9 7 2
11 11 O 1.42107 * 106.40257 * 66.46218 * 9 7 2
12 12 N 1.65604 * 107.21821 * 179.97438 * 9 7 2
13 13 C 1.39752 * 119.99653 * 67.63793 * 12 9 7
14 14 C 1.38859 * 120.07317 * 327.49865 * 13 12 9
15 15 C 1.38206 * 119.92802 * 179.74273 * 14 13 12
16 16 Br 1.89103 * 119.96400 * 180.25367 * 15 14 13
17 17 C 1.38378 * 120.07083 * 0.51349 * 15 14 13
18 18 C 1.38257 * 120.14743 * 359.76575 * 17 15 14
19 19 C 1.38214 * 120.07153 * 359.97329 * 18 17 15
20 20 Cl 1.73605 * 120.03727 * 179.97438 * 19 18 17
21 21 H 0.97000 * 120.00385 * 359.97438 * 1 2 3
22 22 H 0.96994 * 119.99741 * 247.63514 * 12 9 7
23 23 H 1.08002 * 120.03698 * 359.97438 * 14 13 12
24 24 H 1.08005 * 119.92451 * 179.74084 * 17 15 14
25 25 H 1.08006 * 119.96268 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8902 2.3965 -1.2124
6 1 1.8903 2.3964 1.2126
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 16 1.1236 -2.7200 -0.0005
10 8 0.4519 -2.7956 1.2494
11 8 0.4510 -2.7951 -1.2501
12 7 2.2484 -3.9354 -0.0019
13 6 3.0618 -4.1359 1.1166
14 6 3.4505 -3.0552 1.8971
15 6 4.2506 -3.2575 3.0057
16 35 4.7746 -1.7873 4.0733
17 6 4.6730 -4.5342 3.3322
18 6 4.2925 -5.6117 2.5540
19 6 3.4881 -5.4169 1.4471
20 17 3.0115 -6.7705 0.4701
21 1 -0.4851 0.8400 0.0004
22 1 2.3426 -4.5081 -0.7791
23 1 3.1249 -2.0579 1.6401
24 1 5.3016 -4.6891 4.1967
25 1 4.6243 -6.6068 2.8113
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000061692663.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:51
Heat of formation + Delta-G solvation = -72.218456 kcal
Electronic energy + Delta-G solvation = -17235.945176 eV
Core-core repulsion = 14026.880134 eV
Total energy + Delta-G solvation = -3209.065042 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 338.912 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.48507 -36.42090 -35.50557 -34.81001 -34.21797 -33.27741 -31.94434 -29.52719
-28.48870 -26.41372 -22.86800 -22.09591 -19.15255 -18.09531 -17.50627 -16.46387
-16.31877 -15.39468 -14.86766 -14.38220 -14.17608 -13.87729 -13.68984 -13.43029
-12.29907 -12.19507 -11.97105 -11.70176 -11.37982 -11.31620 -11.02385 -10.94752
-10.67343 -10.56813 -10.49488 -10.43528 -10.19137 -10.13704 -9.38332 -9.00832
-8.61708 -8.00394 -6.86446 -5.52361 1.00940 1.33725 1.68388 1.93817
2.20349 2.99296 3.08290 3.15217 3.56081 3.92398 4.28561 4.48471
4.77586 5.08009 5.24695 5.34835 5.52126 5.69473 5.90329 6.09079
6.14700 6.30793 6.54054 6.71174 7.15360 7.49008 7.75056 8.70864
10.07915
Molecular weight = 338.91amu
Principal moments of inertia in cm(-1)
A = 0.010109 B = 0.007954 C = 0.004721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2769.049083 B = 3519.570189 C = 5929.484970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.837 5.837
2 C 0.137 3.863
3 Si 0.919 3.081
4 H -0.258 1.258
5 H -0.269 1.269
6 H -0.268 1.268
7 C -1.023 5.023
8 H 0.111 0.889
9 S 2.694 3.306
10 O -0.984 6.984
11 O -0.991 6.991
12 N -1.064 6.064
13 C 0.217 3.783
14 C -0.134 4.134
15 C -0.051 4.051
16 Br -0.044 7.044
17 C -0.117 4.117
18 C -0.081 4.081
19 C -0.065 4.065
20 Cl -0.065 7.065
21 H 0.294 0.706
22 H 0.417 0.583
23 H 0.180 0.820
24 H 0.139 0.861
25 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.660 -6.733 6.697 15.038
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.466 5.466
2 C -0.083 4.083
3 Si 0.743 3.257
4 H -0.181 1.181
5 H -0.194 1.194
6 H -0.193 1.193
7 C -1.156 5.156
8 H 0.129 0.871
9 S 2.795 3.205
10 O -0.974 6.974
11 O -0.981 6.981
12 N -0.804 5.804
13 C 0.115 3.885
14 C -0.157 4.157
15 C -0.131 4.131
16 Br 0.042 6.958
17 C -0.138 4.138
18 C -0.101 4.101
19 C -0.097 4.097
20 Cl -0.036 7.036
21 H 0.104 0.896
22 H 0.252 0.748
23 H 0.197 0.803
24 H 0.157 0.843
25 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 10.581 -6.247 7.066 14.174
hybrid contribution 0.748 0.415 -0.773 1.153
sum 11.330 -5.832 6.293 14.212
Atomic orbital electron populations
1.69881 1.06859 1.31105 1.38763 1.24733 0.94490 1.00871 0.88202
0.86120 0.80702 0.80082 0.78840 1.18129 1.19445 1.19257 1.30517
1.06189 1.11070 1.67860 0.87063 1.01365 0.72242 0.73518 0.73391
1.93425 1.71817 1.86963 1.45182 1.93409 1.72169 1.87167 1.45343
1.54470 1.52623 1.52304 1.21022 1.17048 0.91645 0.91125 0.88656
1.21925 0.97758 1.01192 0.94830 1.21534 1.01857 0.92897 0.96822
1.96701 1.90278 1.41577 1.67256 1.20904 1.01900 0.90165 1.00850
1.20791 0.96816 0.99674 0.92859 1.20872 1.04827 0.87264 0.96742
1.98346 1.91198 1.43818 1.70260 0.89559 0.74849 0.80274 0.84283
0.84065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 23.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -23.47 13.19 55.43 0.73 -22.74 15
2 C 0.14 3.60 5.46 -17.82 -0.10 3.50 15
3 Si 0.92 19.56 29.54 -169.99 -5.02 14.53 15
4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 15
5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 15
6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15
7 C -1.02 -26.33 7.57 30.60 0.23 -26.10 15
8 H 0.11 2.59 6.91 -52.49 -0.36 2.22 15
9 S 2.69 69.20 4.63 -107.50 -0.50 68.70 15
10 O -0.98 -27.81 17.43 -57.17 -1.00 -28.81 15
11 O -0.99 -28.06 18.02 -57.17 -1.03 -29.09 15
12 N -1.06 -21.33 5.55 32.43 0.18 -21.15 15
13 C 0.22 4.02 6.20 -83.74 -0.52 3.50 15
14 C -0.13 -2.53 8.65 -39.36 -0.34 -2.87 15
15 C -0.05 -0.80 6.22 -39.54 -0.25 -1.04 15
16 Br -0.04 -0.63 33.70 -68.01 -2.29 -2.92 15
17 C -0.12 -1.50 9.78 -39.52 -0.39 -1.88 15
18 C -0.08 -1.03 9.82 -39.58 -0.39 -1.42 15
19 C -0.07 -1.01 6.34 -39.31 -0.25 -1.26 15
20 Cl -0.06 -0.91 27.91 -51.86 -1.45 -2.35 15
21 H 0.29 7.37 8.31 -40.82 -0.34 7.03 15
22 H 0.42 7.27 8.11 -34.47 -0.28 6.99 15
23 H 0.18 3.75 4.48 -52.49 -0.24 3.51 15
24 H 0.14 1.36 8.06 -52.48 -0.42 0.93 15
25 H 0.14 1.33 8.06 -52.48 -0.42 0.90 15
LS Contribution 275.25 15.07 4.15 4.15
Total: -1.00 -31.71 275.25 -9.08 -40.79
By element:
Atomic # 1 Polarization: 7.33 SS G_CDS: -0.86 Total: 6.47 kcal
Atomic # 6 Polarization: -25.58 SS G_CDS: -2.00 Total: -27.57 kcal
Atomic # 7 Polarization: -44.80 SS G_CDS: 0.91 Total: -43.89 kcal
Atomic # 8 Polarization: -55.87 SS G_CDS: -2.03 Total: -57.90 kcal
Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal
Atomic # 16 Polarization: 69.20 SS G_CDS: -0.50 Total: 68.70 kcal
Atomic # 17 Polarization: -0.91 SS G_CDS: -1.45 Total: -2.35 kcal
Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -31.71 -9.08 -40.79 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000061692663.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.428 kcal
(2) G-P(sol) polarization free energy of solvation -31.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds