Wall clock time and date at job start Tue Mar 31 2020 22:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47184 * 2 1 4 4 C 1.36886 * 119.99551 * 275.45534 * 3 2 1 5 5 H 1.07999 * 119.99937 * 141.90316 * 4 3 2 6 6 C 1.39010 * 120.00077 * 321.88968 * 4 3 2 7 7 N 1.31395 * 120.00111 * 338.03678 * 6 4 3 8 8 Si 1.86800 * 119.99789 * 158.02818 * 6 4 3 9 9 H 1.48506 * 109.47003 * 90.00442 * 8 6 4 10 10 H 1.48498 * 109.47110 * 210.00511 * 8 6 4 11 11 H 1.48500 * 109.47033 * 330.00725 * 8 6 4 12 12 C 1.34772 * 120.00073 * 95.45157 * 3 2 1 13 13 O 1.21742 * 119.99707 * 175.27656 * 12 3 2 14 14 C 1.46453 * 119.99903 * 355.28495 * 12 3 2 15 15 S 1.75835 * 125.45877 * 273.41276 * 14 12 3 16 16 C 1.70614 * 91.56798 * 180.02562 * 15 14 12 17 17 C 1.33856 * 110.97077 * 359.97438 * 16 15 14 18 18 C 1.36767 * 125.46494 * 93.41646 * 14 12 3 19 19 S 1.76193 * 123.36319 * 0.02562 * 18 14 12 20 20 O 1.42100 * 104.28075 * 221.07859 * 19 18 14 21 21 O 1.42106 * 104.27707 * 348.93284 * 19 18 14 22 22 C 1.81400 * 104.45226 * 105.00734 * 19 18 14 23 23 F 1.39902 * 109.46791 * 305.00512 * 22 19 18 24 24 F 1.39897 * 109.47192 * 65.00293 * 22 19 18 25 25 H 1.09000 * 109.47196 * 60.00027 * 1 2 3 26 26 H 1.09008 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47040 * 299.99855 * 1 2 3 28 28 H 1.09000 * 109.46892 * 239.99619 * 2 1 3 29 29 H 1.09000 * 109.47196 * 119.99972 * 2 1 3 30 30 H 0.96994 * 119.99864 * 179.97438 * 7 6 4 31 31 H 1.08003 * 124.51712 * 180.02562 * 16 15 14 32 32 H 1.07996 * 122.44630 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47156 * 185.00913 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1402 2.0640 -1.1802 5 1 1.8921 3.1142 -1.2245 6 6 2.5835 1.4057 -2.3214 7 7 3.2807 0.2974 -2.2116 8 14 2.1877 2.0966 -4.0112 9 1 3.2664 3.0272 -4.4306 10 1 2.0858 0.9840 -4.9895 11 1 0.8965 2.8280 -3.9570 12 6 2.3475 1.9796 1.1619 13 8 2.8339 3.0956 1.1553 14 6 2.1202 1.2872 2.4322 15 16 0.6216 1.3086 3.3517 16 6 1.2923 0.3051 4.5575 17 6 2.5596 -0.0125 4.2662 18 6 3.0395 0.5204 3.0936 19 16 4.6761 0.2441 2.5022 20 8 4.9161 -1.1316 2.7650 21 8 4.6569 0.7433 1.1718 22 6 5.7208 1.2855 3.5579 23 9 5.2627 2.6065 3.5093 24 9 5.6627 0.8200 4.8759 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5897 -0.1621 -3.0080 31 1 0.7645 -0.0300 5.4382 32 1 3.1613 -0.6408 4.9061 33 1 6.7507 1.2448 3.2032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108163515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:40 Heat of formation + Delta-G solvation = -128.788234 kcal Electronic energy + Delta-G solvation = -26729.790820 eV Core-core repulsion = 22454.613630 eV Total energy + Delta-G solvation = -4275.177190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.15717 -47.29544 -38.96869 -37.29822 -36.89214 -35.90698 -35.00530 -32.09103 -29.76519 -29.52351 -27.49570 -25.88097 -24.44314 -22.37395 -20.79930 -20.36121 -19.12728 -18.03396 -17.67877 -17.54491 -17.37223 -16.70605 -16.35237 -15.50853 -15.08681 -14.80066 -14.29717 -14.20516 -14.13010 -13.98783 -13.68909 -13.55295 -13.09104 -12.94527 -12.76144 -12.69491 -12.40403 -11.98969 -11.92803 -11.79752 -11.55405 -11.31494 -11.10392 -11.00102 -10.68553 -10.50205 -10.40340 -10.37299 -10.12757 -9.16224 -8.90985 -8.71084 -8.41905 -7.50275 -6.34315 -3.98269 -0.36936 0.77623 1.48486 2.02749 2.25841 2.68096 3.16219 3.24874 3.29531 3.61174 3.72553 3.77405 3.82369 4.13862 4.15913 4.62231 4.69025 4.98457 5.14514 5.37112 5.51942 5.81411 5.87284 6.06370 6.16566 6.24154 6.31674 6.46940 6.83270 7.19937 7.55086 8.16189 8.40700 9.07609 9.27797 9.86543 10.66668 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.005949 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.976951 B = 4705.209348 C = 5554.779904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.087 3.913 3 N -0.396 5.396 4 C -0.304 4.304 5 H 0.096 0.904 6 C 0.044 3.956 7 N -0.841 5.841 8 Si 0.918 3.082 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.495 3.505 13 O -0.553 6.553 14 C -0.056 4.056 15 S 0.239 5.761 16 C -0.279 4.279 17 C -0.062 4.062 18 C -0.662 4.662 19 S 2.474 3.526 20 O -0.896 6.896 21 O -0.829 6.829 22 C -0.218 4.218 23 F -0.155 7.155 24 F -0.173 7.173 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.270 0.730 31 H 0.170 0.830 32 H 0.149 0.851 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -3.561 10.642 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.037 4.037 3 N -0.113 5.113 4 C -0.433 4.433 5 H 0.113 0.887 6 C -0.164 4.164 7 N -0.476 5.476 8 Si 0.744 3.256 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.280 3.720 13 O -0.437 6.437 14 C -0.181 4.181 15 S 0.506 5.494 16 C -0.416 4.416 17 C -0.091 4.091 18 C -0.764 4.764 19 S 2.640 3.360 20 O -0.893 6.893 21 O -0.826 6.826 22 C -0.352 4.352 23 F -0.136 7.136 24 F -0.155 7.155 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.187 0.813 32 H 0.167 0.833 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.325 -2.978 9.789 10.493 hybrid contribution 1.134 -0.062 0.544 1.259 sum -1.190 -3.040 10.333 10.836 Atomic orbital electron populations 1.22209 0.97423 1.00714 1.01865 1.21706 0.92586 0.85467 1.03973 1.43325 1.52067 1.11587 1.04284 1.19427 1.43773 0.96449 0.83634 0.88657 1.25478 0.93983 0.96626 1.00306 1.69967 1.29405 1.18028 1.30249 0.86082 0.79396 0.78678 0.81439 1.20094 1.20702 1.19216 1.17164 0.84414 0.88426 0.81983 1.90731 1.47674 1.19693 1.85596 1.25595 0.96589 0.95766 1.00137 1.83181 1.12772 1.42664 1.10823 1.25146 1.00543 1.09111 1.06833 1.19388 0.95618 0.99531 0.94591 1.29621 1.22753 1.15316 1.08747 1.07381 0.76024 0.76179 0.76388 1.93619 1.84587 1.25845 1.85265 1.93910 1.83750 1.79674 1.25224 1.33255 1.17267 0.91974 0.92675 1.93152 1.90112 1.34123 1.96247 1.93025 1.97993 1.87824 1.36663 0.91690 0.92796 0.93917 0.86613 0.93692 0.91992 0.81279 0.83305 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.21 37.16 0.38 -2.57 16 2 C 0.09 1.92 5.63 -4.04 -0.02 1.90 16 3 N -0.40 -10.01 2.43 -116.37 -0.28 -10.29 16 4 C -0.30 -8.22 8.82 -15.01 -0.13 -8.36 16 5 H 0.10 2.65 7.83 -52.49 -0.41 2.23 16 6 C 0.04 1.13 4.99 -17.45 -0.09 1.05 16 7 N -0.84 -22.37 11.47 55.50 0.64 -21.74 16 8 Si 0.92 19.91 29.61 -169.99 -5.03 14.88 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 C 0.49 12.31 4.98 -12.95 -0.06 12.25 16 13 O -0.55 -15.56 17.02 5.15 0.09 -15.48 16 14 C -0.06 -1.13 4.41 -36.81 -0.16 -1.29 16 15 S 0.24 3.68 22.05 -107.50 -2.37 1.31 16 16 C -0.28 -3.72 10.92 29.19 0.32 -3.40 16 17 C -0.06 -0.93 9.84 -41.41 -0.41 -1.34 16 18 C -0.66 -12.12 5.22 -40.40 -0.21 -12.33 16 19 S 2.47 44.61 5.46 -107.50 -0.59 44.03 16 20 O -0.90 -16.22 17.80 -57.54 -1.02 -17.24 16 21 O -0.83 -18.91 15.37 -57.97 -0.89 -19.80 16 22 C -0.22 -3.22 5.96 101.05 0.60 -2.62 16 23 F -0.15 -2.76 17.29 2.25 0.04 -2.72 16 24 F -0.17 -2.46 17.38 2.25 0.04 -2.42 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 27 H 0.04 0.71 7.08 -51.93 -0.37 0.34 16 28 H 0.12 2.78 5.56 -51.93 -0.29 2.49 16 29 H 0.04 0.94 6.52 -51.93 -0.34 0.60 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.15 1.54 8.14 -51.92 -0.42 1.11 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -33.87 324.00 -6.94 -40.81 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -2.65 Total: 0.49 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 0.21 Total: -16.71 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.35 Total: -32.03 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.83 Total: -52.51 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.08 Total: -5.14 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Atomic # 16 Polarization: 48.29 SS G_CDS: -2.96 Total: 45.34 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.87 -6.94 -40.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108163515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.976 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds