Wall clock time and date at job start Tue Mar 31 2020 22:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 119.99884 * 2 1 4 4 C 1.50702 * 109.47375 * 270.00335 * 3 2 1 5 5 H 1.08001 * 119.99502 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99978 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99909 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00263 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46750 * 60.00049 * 8 6 4 10 10 H 1.48500 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47232 * 300.00648 * 8 6 4 12 12 C 1.34773 * 119.99623 * 180.02562 * 2 1 3 13 13 O 1.21710 * 119.99628 * 174.54358 * 12 2 1 14 14 C 1.46584 * 120.00464 * 354.26283 * 12 2 1 15 15 S 1.75830 * 125.45623 * 96.06868 * 14 12 2 16 16 C 1.70615 * 91.56298 * 179.97438 * 15 14 12 17 17 C 1.33820 * 110.95516 * 359.97438 * 16 15 14 18 18 C 1.36646 * 125.45854 * 275.76443 * 14 12 2 19 19 S 1.76198 * 123.35070 * 0.02562 * 18 14 12 20 20 O 1.42097 * 104.27785 * 46.46625 * 19 18 14 21 21 O 1.42101 * 104.27350 * 174.32360 * 19 18 14 22 22 C 1.81400 * 104.45158 * 290.39491 * 19 18 14 23 23 F 1.39905 * 109.47070 * 305.77786 * 22 19 18 24 24 F 1.39904 * 109.47030 * 65.77645 * 22 19 18 25 25 H 1.08996 * 109.46530 * 274.90915 * 1 2 3 26 26 H 1.08998 * 109.46979 * 34.90342 * 1 2 3 27 27 H 1.09000 * 109.46737 * 154.90972 * 1 2 3 28 28 H 1.08999 * 109.47044 * 30.00891 * 3 2 1 29 29 H 1.09001 * 109.46802 * 150.00406 * 3 2 1 30 30 H 0.97000 * 119.99793 * 180.02562 * 7 6 4 31 31 H 1.07999 * 124.52156 * 180.02562 * 16 15 14 32 32 H 1.07994 * 122.45008 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47161 * 185.78069 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5533 3.6182 -0.6729 8 14 3.4379 3.4171 -3.4337 9 1 2.1405 3.5939 -4.1344 10 1 4.1802 4.7033 -3.4337 11 1 4.2412 2.3825 -4.1332 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1696 -0.1008 14 6 1.4115 -2.4336 0.1258 15 16 0.9129 -3.4611 -1.2110 16 6 0.2058 -4.5877 -0.1425 17 6 0.3483 -4.1959 1.1291 18 6 1.0174 -3.0075 1.3016 19 16 1.3319 -2.2933 2.8814 20 8 0.9664 -0.9287 2.7281 21 8 0.6421 -3.1387 3.7917 22 6 3.1257 -2.4510 3.1005 23 9 3.5010 -3.7875 2.9270 24 9 3.7826 -1.6557 2.1555 25 1 -0.3632 0.0879 1.0239 26 1 -0.3633 0.8428 -0.5880 27 1 -0.3633 -0.9307 -0.4358 28 1 1.6085 2.0283 0.5140 29 1 3.1500 1.1383 0.5138 30 1 4.0294 4.4445 -0.8502 31 1 -0.2899 -5.4962 -0.4511 32 1 -0.0312 -4.7730 1.9593 33 1 3.3993 -2.1241 4.1037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108261524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:53 Heat of formation + Delta-G solvation = -131.888759 kcal Electronic energy + Delta-G solvation = -26440.345800 eV Core-core repulsion = 22165.034160 eV Total energy + Delta-G solvation = -4275.311639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.21568 -47.34217 -39.43620 -37.72645 -37.31574 -36.40395 -34.89344 -32.63501 -30.37046 -27.82629 -27.60892 -26.16525 -25.27968 -22.95949 -21.15649 -20.16156 -19.25854 -18.35318 -17.85603 -17.61867 -17.44278 -16.76986 -16.48819 -15.86729 -15.56424 -15.13554 -14.55362 -14.46991 -14.43314 -14.19398 -14.01600 -13.57069 -13.32901 -12.94572 -12.81360 -12.76927 -12.58539 -12.40047 -12.10083 -12.06510 -11.83137 -11.76142 -11.21554 -11.00638 -10.90236 -10.67406 -10.58212 -10.19422 -9.66829 -9.45701 -9.30102 -8.81887 -8.43092 -7.69950 -6.04566 -4.09697 -0.75587 0.35096 1.08855 1.67774 1.91367 2.26663 3.13972 3.16886 3.32001 3.36520 3.39155 3.48056 3.67223 3.76006 4.01258 4.34401 4.43601 4.75260 4.87379 5.09385 5.29935 5.48339 5.62773 5.74418 5.95823 6.10992 6.32097 6.99405 7.39136 7.45549 7.90157 8.19689 8.23198 8.69614 8.94838 9.54580 11.03487 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.004896 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.933855 B = 5717.345313 C = 6434.723392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.561 5.561 3 C 0.248 3.752 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.539 3.461 13 O -0.500 6.500 14 C -0.102 4.102 15 S 0.288 5.712 16 C -0.274 4.274 17 C -0.061 4.061 18 C -0.648 4.648 19 S 2.482 3.518 20 O -0.868 6.868 21 O -0.898 6.898 22 C -0.211 4.211 23 F -0.168 7.168 24 F -0.134 7.134 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -15.851 5.926 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.291 5.291 3 C 0.130 3.870 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.377 6.377 14 C -0.227 4.227 15 S 0.554 5.446 16 C -0.411 4.411 17 C -0.089 4.089 18 C -0.752 4.752 19 S 2.650 3.350 20 O -0.865 6.865 21 O -0.895 6.895 22 C -0.348 4.348 23 F -0.149 7.149 24 F -0.116 7.116 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.568 -15.256 4.880 17.716 hybrid contribution 0.634 -0.361 0.011 0.730 sum -6.934 -15.617 4.891 17.773 Atomic orbital electron populations 1.21847 0.80793 1.01898 1.02471 1.47998 1.06657 1.06741 1.67725 1.19423 0.92681 0.77307 0.97631 1.21370 1.36912 1.06437 0.92087 0.92410 1.24914 0.95294 0.96312 0.97438 1.69927 1.38163 1.14301 1.30761 0.86553 0.78363 0.77837 0.84624 1.20230 1.21156 1.20191 1.17115 0.87268 0.82180 0.81466 1.90927 1.11944 1.85878 1.48915 1.25301 0.99334 1.00855 0.97260 1.83344 1.45355 1.09216 1.06659 1.25349 1.10719 1.07173 0.97900 1.19414 0.97863 0.93552 0.98093 1.29566 1.17578 1.10041 1.17965 1.06886 0.76512 0.76223 0.75349 1.93739 1.76553 1.31062 1.85114 1.93615 1.65785 1.68381 1.61742 1.32910 1.21666 0.79419 1.00845 1.93066 1.93440 1.31834 1.96595 1.93373 1.82744 1.71437 1.63999 0.91404 0.90275 0.93134 0.94032 0.93449 0.92600 0.80675 0.82355 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 9.86 59.85 0.59 1.87 16 2 N -0.56 -12.19 2.39 -184.54 -0.44 -12.63 16 3 C 0.25 6.48 5.14 -5.19 -0.03 6.45 16 4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.54 11.36 5.34 -12.90 -0.07 11.30 16 13 O -0.50 -12.34 14.26 5.18 0.07 -12.26 16 14 C -0.10 -1.69 4.28 -36.79 -0.16 -1.85 16 15 S 0.29 3.60 22.99 -107.50 -2.47 1.13 16 16 C -0.27 -2.78 10.92 29.18 0.32 -2.46 16 17 C -0.06 -0.70 9.63 -41.41 -0.40 -1.10 16 18 C -0.65 -9.30 5.52 -40.44 -0.22 -9.52 16 19 S 2.48 34.20 5.15 -107.50 -0.55 33.64 16 20 O -0.87 -14.11 14.97 -57.54 -0.86 -14.97 16 21 O -0.90 -12.15 17.20 -57.54 -0.99 -13.14 16 22 C -0.21 -2.83 5.96 101.05 0.60 -2.23 16 23 F -0.17 -2.30 17.28 2.25 0.04 -2.26 16 24 F -0.13 -2.47 13.66 2.25 0.03 -2.44 16 25 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 26 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 27 H 0.05 0.73 6.73 -51.93 -0.35 0.38 16 28 H 0.04 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.05 1.37 7.50 -51.93 -0.39 0.98 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.16 1.50 7.68 -52.49 -0.40 1.10 16 33 H 0.15 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -34.98 320.87 -7.14 -42.12 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -2.73 Total: -4.09 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 0.22 Total: -11.01 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.30 Total: -38.16 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.78 Total: -40.38 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.07 Total: -4.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 37.79 SS G_CDS: -3.02 Total: 34.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.98 -7.14 -42.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108261524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.774 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds