Wall clock time and date at job start Tue Mar 31 2020 22:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 119.99884 * 2 1 4 4 C 1.50702 * 109.47375 * 270.00335 * 3 2 1 5 5 H 1.08001 * 119.99502 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99978 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99909 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00263 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46750 * 60.00049 * 8 6 4 10 10 H 1.48500 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47232 * 300.00648 * 8 6 4 12 12 C 1.34773 * 119.99623 * 180.02562 * 2 1 3 13 13 O 1.21710 * 119.99628 * 174.54358 * 12 2 1 14 14 C 1.46584 * 120.00464 * 354.26283 * 12 2 1 15 15 S 1.75830 * 125.45623 * 96.06868 * 14 12 2 16 16 C 1.70615 * 91.56298 * 179.97438 * 15 14 12 17 17 C 1.33820 * 110.95516 * 359.97438 * 16 15 14 18 18 C 1.36646 * 125.45854 * 275.76443 * 14 12 2 19 19 S 1.76198 * 123.35070 * 0.02562 * 18 14 12 20 20 O 1.42097 * 104.27785 * 46.46625 * 19 18 14 21 21 O 1.42101 * 104.27350 * 174.32360 * 19 18 14 22 22 C 1.81400 * 104.45158 * 290.39491 * 19 18 14 23 23 F 1.39905 * 109.47070 * 305.77786 * 22 19 18 24 24 F 1.39904 * 109.47030 * 65.77645 * 22 19 18 25 25 H 1.08996 * 109.46530 * 274.90915 * 1 2 3 26 26 H 1.08998 * 109.46979 * 34.90342 * 1 2 3 27 27 H 1.09000 * 109.46737 * 154.90972 * 1 2 3 28 28 H 1.08999 * 109.47044 * 30.00891 * 3 2 1 29 29 H 1.09001 * 109.46802 * 150.00406 * 3 2 1 30 30 H 0.97000 * 119.99793 * 180.02562 * 7 6 4 31 31 H 1.07999 * 124.52156 * 180.02562 * 16 15 14 32 32 H 1.07994 * 122.45008 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47161 * 185.78069 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5533 3.6182 -0.6729 8 14 3.4379 3.4171 -3.4337 9 1 2.1405 3.5939 -4.1344 10 1 4.1802 4.7033 -3.4337 11 1 4.2412 2.3825 -4.1332 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1696 -0.1008 14 6 1.4115 -2.4336 0.1258 15 16 0.9129 -3.4611 -1.2110 16 6 0.2058 -4.5877 -0.1425 17 6 0.3483 -4.1959 1.1291 18 6 1.0174 -3.0075 1.3016 19 16 1.3319 -2.2933 2.8814 20 8 0.9664 -0.9287 2.7281 21 8 0.6421 -3.1387 3.7917 22 6 3.1257 -2.4510 3.1005 23 9 3.5010 -3.7875 2.9270 24 9 3.7826 -1.6557 2.1555 25 1 -0.3632 0.0879 1.0239 26 1 -0.3633 0.8428 -0.5880 27 1 -0.3633 -0.9307 -0.4358 28 1 1.6085 2.0283 0.5140 29 1 3.1500 1.1383 0.5138 30 1 4.0294 4.4445 -0.8502 31 1 -0.2899 -5.4962 -0.4511 32 1 -0.0312 -4.7730 1.9593 33 1 3.3993 -2.1241 4.1037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108261524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:52 Heat of formation + Delta-G solvation = -157.806657 kcal Electronic energy + Delta-G solvation = -26441.469684 eV Core-core repulsion = 22165.034160 eV Total energy + Delta-G solvation = -4276.435524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.37519 -48.53991 -40.93967 -38.82099 -38.49326 -37.54679 -36.65197 -34.71369 -31.61291 -29.61377 -28.71212 -27.55849 -26.70962 -24.78270 -22.17255 -21.57356 -20.37419 -19.47756 -18.99069 -18.90294 -18.76511 -18.54707 -17.90715 -17.46556 -16.79775 -16.59225 -16.19888 -15.85194 -15.65014 -15.32692 -15.26673 -14.77791 -14.48652 -14.37482 -14.33802 -13.94060 -13.91946 -13.68314 -13.53631 -13.48753 -13.36102 -13.13421 -12.84665 -12.76452 -12.53520 -12.19131 -12.01998 -11.76244 -11.70768 -11.06257 -10.61822 -10.35855 -9.81871 -9.47372 -8.20077 -6.34858 -1.83961 -0.74121 0.00494 0.75021 0.97729 1.19289 1.38806 1.43134 1.50307 1.64940 2.06876 2.20472 2.38231 2.44031 2.74761 2.96964 3.09723 3.24670 3.39645 3.93332 4.16191 4.28462 4.64534 4.71457 4.84595 4.94187 5.00337 5.09019 5.24430 5.51905 5.78087 6.05360 6.53992 6.72518 7.10996 7.35947 8.87309 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.004896 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.933855 B = 5717.345313 C = 6434.723392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.572 5.572 3 C 0.264 3.736 4 C -0.545 4.545 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.543 3.457 13 O -0.550 6.550 14 C -0.159 4.159 15 S 0.319 5.681 16 C -0.239 4.239 17 C -0.076 4.076 18 C -0.638 4.638 19 S 2.494 3.506 20 O -0.899 6.899 21 O -0.893 6.893 22 C -0.221 4.221 23 F -0.167 7.167 24 F -0.166 7.166 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.028 0.972 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.221 0.779 32 H 0.185 0.815 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -18.258 5.087 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.301 5.301 3 C 0.143 3.857 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.327 3.673 13 O -0.430 6.430 14 C -0.284 4.284 15 S 0.586 5.414 16 C -0.377 4.377 17 C -0.103 4.103 18 C -0.744 4.744 19 S 2.664 3.336 20 O -0.896 6.896 21 O -0.890 6.890 22 C -0.358 4.358 23 F -0.149 7.149 24 F -0.147 7.147 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.202 0.798 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -9.378 -17.685 4.040 20.421 hybrid contribution 1.136 0.229 0.333 1.206 sum -8.242 -17.456 4.374 19.793 Atomic orbital electron populations 1.22029 0.78248 1.03503 1.03323 1.47925 1.08226 1.05825 1.68165 1.18859 0.91169 0.79312 0.96347 1.21651 1.37155 1.06731 0.92766 0.92518 1.25844 0.94839 0.96319 1.01987 1.70054 1.38748 1.14744 1.33092 0.85466 0.78851 0.77347 0.79127 1.18419 1.20392 1.20258 1.17546 0.86853 0.83335 0.79559 1.90872 1.14362 1.87049 1.50739 1.24700 1.03370 1.00352 0.99972 1.83246 1.44202 1.08385 1.05528 1.25900 1.07965 1.07196 0.96648 1.19699 0.98097 0.92849 0.99662 1.29691 1.16851 1.10658 1.17156 1.06414 0.76398 0.75479 0.75298 1.93708 1.77445 1.32897 1.85594 1.93611 1.65768 1.67972 1.61666 1.33217 1.21124 0.79021 1.02416 1.93054 1.93388 1.31754 1.96693 1.93310 1.83318 1.72499 1.65618 0.90659 0.90307 0.90119 0.95374 0.97600 0.92357 0.76185 0.79814 0.78241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.48 9.86 127.77 1.26 3.74 16 2 N -0.57 -25.78 2.39 -855.97 -2.05 -27.83 16 3 C 0.26 14.59 5.14 85.63 0.44 15.03 16 4 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 5 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 6 C 0.01 0.54 5.46 84.65 0.46 1.00 16 7 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.54 23.65 5.34 86.42 0.46 24.11 16 13 O -0.55 -28.67 14.26 -4.38 -0.06 -28.73 16 14 C -0.16 -5.15 4.28 24.08 0.10 -5.04 16 15 S 0.32 7.13 22.99 -56.49 -1.30 5.84 16 16 C -0.24 -3.73 10.92 66.82 0.73 -3.00 16 17 C -0.08 -1.48 9.63 21.08 0.20 -1.27 16 18 C -0.64 -17.26 5.52 21.72 0.12 -17.14 16 19 S 2.49 66.91 5.15 -56.49 -0.29 66.61 16 20 O -0.90 -29.81 14.97 -127.65 -1.91 -31.72 16 21 O -0.89 -22.41 17.20 -127.65 -2.20 -24.60 16 22 C -0.22 -5.84 5.96 113.37 0.68 -5.16 16 23 F -0.17 -4.42 17.28 44.97 0.78 -3.64 16 24 F -0.17 -6.39 13.66 44.97 0.61 -5.77 16 25 H 0.07 2.47 6.91 -2.39 -0.02 2.46 16 26 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 27 H 0.08 2.26 6.73 -2.39 -0.02 2.25 16 28 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 29 H 0.01 0.37 7.50 -2.39 -0.02 0.35 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.18 2.64 7.68 -2.91 -0.02 2.62 16 33 H 0.20 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -80.06 320.87 1.77 -78.29 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.17 Total: -0.29 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 4.70 Total: -19.02 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.76 Total: -83.81 kcal Atomic # 8 Polarization: -80.89 SS G_CDS: -4.17 Total: -85.06 kcal Atomic # 9 Polarization: -10.80 SS G_CDS: 1.39 Total: -9.41 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 74.04 SS G_CDS: -1.59 Total: 72.45 kcal Total: -80.06 1.77 -78.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108261524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.514 kcal (2) G-P(sol) polarization free energy of solvation -80.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds