Wall clock time and date at job start Tue Mar 31 2020 22:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46770 * 2 1 4 4 C 1.50695 * 109.47203 * 239.99987 * 2 1 3 5 5 H 1.07995 * 120.00204 * 239.99954 * 4 2 1 6 6 C 1.37880 * 119.99926 * 59.99935 * 4 2 1 7 7 N 1.31523 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47517 * 89.99692 * 8 6 4 10 10 H 1.48497 * 109.47353 * 209.99855 * 8 6 4 11 11 H 1.48505 * 109.47192 * 330.00033 * 8 6 4 12 12 N 1.46496 * 109.47081 * 119.99948 * 2 1 3 13 13 C 1.34781 * 119.99988 * 274.99742 * 12 2 1 14 14 O 1.21699 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.46582 * 119.99894 * 179.97438 * 13 12 2 16 16 S 1.75833 * 125.45950 * 353.60032 * 15 13 12 17 17 C 1.70612 * 91.56556 * 179.97438 * 16 15 13 18 18 C 1.33817 * 110.95383 * 0.02562 * 17 16 15 19 19 C 1.36649 * 125.46048 * 173.56585 * 15 13 12 20 20 S 1.76200 * 123.34766 * 0.05071 * 19 15 13 21 21 O 1.42101 * 104.27813 * 46.19483 * 20 19 15 22 22 O 1.42103 * 104.27846 * 174.05210 * 20 19 15 23 23 C 1.81396 * 104.45070 * 290.12410 * 20 19 15 24 24 F 1.39903 * 109.46812 * 294.26991 * 23 20 19 25 25 F 1.39897 * 109.47398 * 54.26939 * 23 20 19 26 26 H 1.09007 * 109.47102 * 300.00074 * 1 2 3 27 27 H 1.08996 * 109.47056 * 59.99483 * 1 2 3 28 28 H 1.08993 * 109.47079 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99979 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00108 * 94.99792 * 12 2 1 31 31 H 1.07999 * 124.52507 * 179.72485 * 17 16 15 32 32 H 1.08003 * 122.44837 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47356 * 174.27120 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7583 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8573 1.1625 2.4119 15 6 2.6352 -0.7093 3.5541 16 16 2.9415 -2.4361 3.6813 17 6 3.4359 -2.2761 5.3064 18 6 3.3662 -1.0004 5.7044 19 6 2.9257 -0.1148 4.7497 20 16 2.7516 1.6145 5.0392 21 8 1.4758 1.9332 4.5008 22 8 3.0202 1.7664 6.4263 23 6 4.0681 2.3740 4.0491 24 9 5.3139 1.9971 4.5622 25 9 3.9609 1.9439 2.7222 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.7087 1.1613 -3.4844 30 1 2.2490 -1.6318 1.1526 31 1 3.7573 -3.0958 5.9319 32 1 3.6366 -0.6893 6.7027 33 1 3.9723 3.4591 4.0882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108263330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:37 Heat of formation + Delta-G solvation = -141.493102 kcal Electronic energy + Delta-G solvation = -26038.311029 eV Core-core repulsion = 21762.582914 eV Total energy + Delta-G solvation = -4275.728115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.15435 -47.26869 -39.43107 -37.72964 -37.14350 -36.13542 -34.91115 -32.55852 -30.49616 -28.77176 -27.50936 -25.62230 -25.26527 -22.10782 -20.92330 -20.04038 -19.19554 -18.82173 -18.09899 -17.78043 -17.47651 -16.79061 -16.28592 -15.49763 -15.36483 -15.10317 -14.74062 -14.44564 -14.33945 -14.15443 -13.97404 -13.53452 -13.24741 -13.00265 -12.75681 -12.71825 -12.48593 -12.29705 -12.12274 -11.79998 -11.64208 -11.16765 -11.02901 -10.98486 -10.78106 -10.53227 -10.38525 -10.28260 -9.46583 -9.37040 -9.11622 -8.93340 -8.62432 -8.08527 -6.17529 -4.27504 -0.56414 0.14903 1.18534 1.60460 1.88525 2.43591 3.21382 3.28345 3.30128 3.31465 3.46650 3.65871 3.71264 3.80611 4.12172 4.30700 4.45957 4.85761 5.02591 5.13970 5.16366 5.51221 5.71576 5.91493 6.77197 6.89839 7.07158 7.26961 7.40960 7.60131 7.82845 8.07382 8.40632 8.61247 8.84548 9.39362 10.88373 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.004311 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.439500 B = 6493.577998 C = 7154.545211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.265 3.735 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.690 5.690 13 C 0.546 3.454 14 O -0.498 6.498 15 C -0.124 4.124 16 S 0.270 5.730 17 C -0.261 4.261 18 C -0.068 4.068 19 C -0.625 4.625 20 S 2.496 3.504 21 O -0.848 6.848 22 O -0.909 6.909 23 C -0.204 4.204 24 F -0.175 7.175 25 F -0.143 7.143 26 H 0.020 0.980 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.177 0.823 32 H 0.161 0.839 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 -3.935 15.517 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.338 5.338 13 C 0.328 3.672 14 O -0.376 6.376 15 C -0.248 4.248 16 S 0.537 5.463 17 C -0.400 4.400 18 C -0.096 4.096 19 C -0.729 4.729 20 S 2.663 3.337 21 O -0.845 6.845 22 O -0.906 6.906 23 C -0.340 4.340 24 F -0.156 7.156 25 F -0.124 7.124 26 H 0.040 0.960 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.194 0.806 32 H 0.178 0.822 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.092 -3.809 14.828 16.134 hybrid contribution 1.352 -0.321 -0.339 1.430 sum 6.443 -4.130 14.490 16.387 Atomic orbital electron populations 1.22108 0.97925 0.99369 1.01442 1.18922 0.91360 0.94232 0.79086 0.92508 1.21166 1.32810 1.13410 0.90168 0.92001 1.24870 0.94728 0.94916 0.99033 1.69901 1.35586 1.22276 1.24030 0.86427 0.79162 0.79278 0.82112 1.20496 1.21024 1.19840 1.46479 1.63987 1.13292 1.10037 1.17126 0.80422 0.87353 0.82318 1.90952 1.49472 1.13807 1.83340 1.25371 1.02583 0.99070 0.97803 1.83151 1.54621 1.02502 1.06021 1.25381 1.11010 1.01863 1.01701 1.19521 0.98830 0.91079 1.00189 1.29795 1.17875 1.25429 0.99756 1.06564 0.76720 0.75360 0.75088 1.93767 1.30326 1.81806 1.78631 1.93600 1.85149 1.85404 1.26485 1.32904 0.98174 1.12064 0.90901 1.93045 1.43611 1.92909 1.86077 1.93241 1.95678 1.90845 1.32615 0.96049 0.88839 0.95370 0.92454 0.78028 0.80605 0.82174 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 3 H 0.06 1.60 7.58 -51.93 -0.39 1.20 16 4 C -0.54 -13.81 8.73 -34.44 -0.30 -14.11 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.81 -0.09 1.69 16 7 N -0.88 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.69 -14.12 5.06 -56.27 -0.28 -14.40 16 13 C 0.55 10.85 6.72 -12.89 -0.09 10.77 16 14 O -0.50 -11.13 10.05 -19.19 -0.19 -11.32 16 15 C -0.12 -1.96 6.29 -36.79 -0.23 -2.20 16 16 S 0.27 3.09 22.18 -107.50 -2.38 0.70 16 17 C -0.26 -2.61 10.92 29.18 0.32 -2.29 16 18 C -0.07 -0.80 9.63 -41.41 -0.40 -1.20 16 19 C -0.62 -9.12 5.54 -40.44 -0.22 -9.35 16 20 S 2.50 36.30 4.95 -107.50 -0.53 35.77 16 21 O -0.85 -15.35 14.90 -67.22 -1.00 -16.35 16 22 O -0.91 -13.03 17.20 -57.54 -0.99 -14.02 16 23 C -0.20 -2.77 5.95 101.05 0.60 -2.17 16 24 F -0.17 -2.34 17.38 2.25 0.04 -2.30 16 25 F -0.14 -2.52 13.30 2.25 0.03 -2.49 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 6.79 7.68 -40.82 -0.31 6.48 16 31 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.16 1.56 7.69 -52.48 -0.40 1.16 16 33 H 0.15 1.40 8.14 -51.92 -0.42 0.98 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -32.69 315.65 -7.86 -40.55 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -2.66 Total: 3.33 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.25 Total: -15.77 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.34 Total: -37.98 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -2.18 Total: -41.69 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.07 Total: -4.79 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 39.39 SS G_CDS: -2.92 Total: 36.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.69 -7.86 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108263330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.941 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds