Wall clock time and date at job start Tue Mar 31 2020 22:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46770 * 2 1 4 4 C 1.50695 * 109.47203 * 239.99987 * 2 1 3 5 5 H 1.07995 * 120.00204 * 239.99954 * 4 2 1 6 6 C 1.37880 * 119.99926 * 59.99935 * 4 2 1 7 7 N 1.31523 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47517 * 89.99692 * 8 6 4 10 10 H 1.48497 * 109.47353 * 209.99855 * 8 6 4 11 11 H 1.48505 * 109.47192 * 330.00033 * 8 6 4 12 12 N 1.46496 * 109.47081 * 119.99948 * 2 1 3 13 13 C 1.34781 * 119.99988 * 274.99742 * 12 2 1 14 14 O 1.21699 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.46582 * 119.99894 * 179.97438 * 13 12 2 16 16 S 1.75833 * 125.45950 * 353.60032 * 15 13 12 17 17 C 1.70612 * 91.56556 * 179.97438 * 16 15 13 18 18 C 1.33817 * 110.95383 * 0.02562 * 17 16 15 19 19 C 1.36649 * 125.46048 * 173.56585 * 15 13 12 20 20 S 1.76200 * 123.34766 * 0.05071 * 19 15 13 21 21 O 1.42101 * 104.27813 * 46.19483 * 20 19 15 22 22 O 1.42103 * 104.27846 * 174.05210 * 20 19 15 23 23 C 1.81396 * 104.45070 * 290.12410 * 20 19 15 24 24 F 1.39903 * 109.46812 * 294.26991 * 23 20 19 25 25 F 1.39897 * 109.47398 * 54.26939 * 23 20 19 26 26 H 1.09007 * 109.47102 * 300.00074 * 1 2 3 27 27 H 1.08996 * 109.47056 * 59.99483 * 1 2 3 28 28 H 1.08993 * 109.47079 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99979 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00108 * 94.99792 * 12 2 1 31 31 H 1.07999 * 124.52507 * 179.72485 * 17 16 15 32 32 H 1.08003 * 122.44837 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47356 * 174.27120 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7583 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8573 1.1625 2.4119 15 6 2.6352 -0.7093 3.5541 16 16 2.9415 -2.4361 3.6813 17 6 3.4359 -2.2761 5.3064 18 6 3.3662 -1.0004 5.7044 19 6 2.9257 -0.1148 4.7497 20 16 2.7516 1.6145 5.0392 21 8 1.4758 1.9332 4.5008 22 8 3.0202 1.7664 6.4263 23 6 4.0681 2.3740 4.0491 24 9 5.3139 1.9971 4.5622 25 9 3.9609 1.9439 2.7222 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.7087 1.1613 -3.4844 30 1 2.2490 -1.6318 1.1526 31 1 3.7573 -3.0958 5.9319 32 1 3.6366 -0.6893 6.7027 33 1 3.9723 3.4591 4.0882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108263330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:36 Heat of formation + Delta-G solvation = -165.552159 kcal Electronic energy + Delta-G solvation = -26039.354308 eV Core-core repulsion = 21762.582914 eV Total energy + Delta-G solvation = -4276.771394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.024 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.31667 -48.46252 -40.87554 -38.82099 -38.36250 -37.35182 -36.69047 -34.40660 -31.87423 -30.31941 -28.61581 -27.35073 -26.70872 -23.62661 -21.96895 -21.73324 -20.43540 -20.15037 -19.25901 -18.89041 -18.64410 -18.19789 -17.76048 -17.05322 -16.77960 -16.50274 -16.19500 -15.74121 -15.55583 -15.27558 -15.19402 -14.80653 -14.66202 -14.47610 -14.21771 -13.87562 -13.74712 -13.65076 -13.49126 -13.30230 -13.01455 -12.85029 -12.77513 -12.63246 -12.27999 -12.13904 -12.03997 -11.64453 -11.10324 -11.01827 -10.59282 -10.35928 -9.97934 -9.73776 -8.16715 -6.34256 -1.68619 -0.94845 0.18421 0.69587 0.95221 1.33327 1.46597 1.47280 1.57609 1.99058 2.18940 2.23587 2.47240 2.57155 2.81292 3.04710 3.14176 3.36999 3.74961 3.96875 4.13418 4.63247 4.76256 4.82592 4.94617 5.03521 5.08855 5.40504 5.53573 5.65119 5.86001 6.08211 6.68146 6.75051 7.20996 7.39836 8.89648 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.004311 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.439500 B = 6493.577998 C = 7154.545211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.011 0.989 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.693 5.693 13 C 0.545 3.455 14 O -0.532 6.532 15 C -0.183 4.183 16 S 0.330 5.670 17 C -0.233 4.233 18 C -0.087 4.087 19 C -0.622 4.622 20 S 2.507 3.493 21 O -0.893 6.893 22 O -0.910 6.910 23 C -0.206 4.206 24 F -0.170 7.170 25 F -0.168 7.168 26 H 0.015 0.985 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.401 0.599 31 H 0.222 0.778 32 H 0.182 0.818 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 -6.606 16.802 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.170 3.830 3 H 0.029 0.971 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.343 5.343 13 C 0.329 3.671 14 O -0.412 6.412 15 C -0.307 4.307 16 S 0.598 5.402 17 C -0.371 4.371 18 C -0.114 4.114 19 C -0.729 4.729 20 S 2.676 3.324 21 O -0.890 6.890 22 O -0.907 6.907 23 C -0.344 4.344 24 F -0.152 7.152 25 F -0.149 7.149 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.236 0.764 31 H 0.239 0.761 32 H 0.199 0.801 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.716 -6.514 16.152 18.666 hybrid contribution 0.925 0.449 -0.592 1.186 sum 7.641 -6.066 15.559 18.365 Atomic orbital electron populations 1.21934 0.98040 0.99646 0.99944 1.18478 0.91253 0.92389 0.80912 0.97116 1.21498 1.32814 1.13689 0.90602 0.90751 1.25765 0.94822 0.95535 1.02207 1.70053 1.36806 1.23806 1.24661 0.85344 0.78990 0.78036 0.77957 1.19601 1.21348 1.18801 1.46144 1.64860 1.13874 1.09389 1.17574 0.79363 0.87133 0.83062 1.90919 1.50586 1.15503 1.84193 1.24872 1.07030 1.02141 0.96644 1.82937 1.52309 0.98320 1.06590 1.25991 1.07528 1.02383 1.01186 1.19782 0.99579 0.91360 1.00654 1.29833 1.17496 1.25479 1.00070 1.06007 0.76157 0.75528 0.74702 1.93723 1.33140 1.82734 1.79405 1.93585 1.85158 1.85576 1.26379 1.33019 0.97728 1.14444 0.89163 1.93047 1.43254 1.93070 1.85836 1.93187 1.95825 1.91315 1.34575 0.96636 0.91146 0.94010 0.92499 0.76396 0.76099 0.80053 0.79022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 13.97 2.56 44.25 0.11 14.09 16 3 H 0.01 0.65 7.58 -2.39 -0.02 0.64 16 4 C -0.55 -28.42 8.73 25.60 0.22 -28.20 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -51.74 11.32 21.45 0.24 -51.49 16 8 Si 0.97 41.18 29.54 68.60 2.03 43.21 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 12 N -0.69 -28.94 5.06 -450.16 -2.28 -31.22 16 13 C 0.54 22.24 6.72 86.42 0.58 22.82 16 14 O -0.53 -25.08 10.05 18.96 0.19 -24.89 16 15 C -0.18 -5.69 6.29 24.08 0.15 -5.53 16 16 S 0.33 6.54 22.18 -56.49 -1.25 5.29 16 17 C -0.23 -3.55 10.92 66.81 0.73 -2.82 16 18 C -0.09 -1.77 9.63 21.08 0.20 -1.56 16 19 C -0.62 -17.48 5.54 21.72 0.12 -17.36 16 20 S 2.51 72.95 4.95 -56.49 -0.28 72.67 16 21 O -0.89 -33.72 14.90 -118.40 -1.76 -35.48 16 22 O -0.91 -25.20 17.20 -127.65 -2.20 -27.40 16 23 C -0.21 -5.55 5.95 113.37 0.67 -4.87 16 24 F -0.17 -4.36 17.38 44.97 0.78 -3.58 16 25 F -0.17 -6.13 13.30 44.97 0.60 -5.53 16 26 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.40 13.95 7.68 -92.71 -0.71 13.24 16 31 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.18 2.87 7.69 -2.91 -0.02 2.85 16 33 H 0.19 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -74.07 315.65 0.46 -73.61 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.48 Total: 13.16 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.91 Total: -28.34 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.04 Total: -82.72 kcal Atomic # 8 Polarization: -84.00 SS G_CDS: -3.77 Total: -87.77 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 1.38 Total: -9.11 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 79.49 SS G_CDS: -1.53 Total: 77.96 kcal Total: -74.07 0.46 -73.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108263330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.940 kcal (2) G-P(sol) polarization free energy of solvation -74.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds