Wall clock time and date at job start Tue Mar 31 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00349 * 2 1 4 4 H 1.48500 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47089 * 300.00304 * 3 2 1 6 6 H 1.48497 * 109.46671 * 60.00332 * 3 2 1 7 7 C 1.37878 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00026 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99974 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40102 * 293.54260 * 9 7 2 11 11 O 1.42100 * 106.40192 * 66.46669 * 9 7 2 12 12 N 1.65609 * 107.21506 * 180.02562 * 9 7 2 13 13 C 1.39790 * 119.99660 * 67.64439 * 12 9 7 14 14 C 1.38880 * 120.06936 * 327.38188 * 13 12 9 15 15 C 1.38115 * 119.95032 * 179.70344 * 14 13 12 16 16 C 1.38389 * 120.07278 * 0.59363 * 15 14 13 17 17 Cl 1.73598 * 119.93321 * 179.69923 * 16 15 14 18 18 C 1.38367 * 120.13297 * 359.68558 * 16 15 14 19 19 C 1.38196 * 120.05022 * 0.02562 * 18 16 15 20 20 Br 1.89093 * 120.04057 * 179.97438 * 19 18 16 21 21 H 0.97007 * 120.00146 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99475 * 247.63791 * 12 9 7 23 23 H 1.08005 * 120.02324 * 359.97438 * 14 13 12 24 24 H 1.07993 * 119.96104 * 180.29462 * 15 14 13 25 25 H 1.07998 * 119.97190 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1233 -2.7200 -0.0005 10 8 0.4516 -2.7955 1.2494 11 8 0.4508 -2.7950 -1.2501 12 7 2.2481 -3.9355 -0.0005 13 6 3.0608 -4.1357 1.1191 14 6 3.4509 -3.0542 1.8981 15 6 4.2488 -3.2555 3.0074 16 6 4.6699 -4.5321 3.3362 17 17 5.6792 -4.7800 4.7267 18 6 4.2880 -5.6113 2.5590 19 6 3.4848 -5.4166 1.4514 20 35 2.9636 -6.8916 0.3891 21 1 -0.4851 0.8401 0.0004 22 1 2.3429 -4.5085 -0.7774 23 1 3.1269 -2.0569 1.6392 24 1 4.5483 -2.4152 3.6160 25 1 4.6178 -6.6064 2.8183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131744521.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:57 Heat of formation + Delta-G solvation = -72.677384 kcal Electronic energy + Delta-G solvation = -17086.138604 eV Core-core repulsion = 13877.053661 eV Total energy + Delta-G solvation = -3209.084942 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.48719 -36.61320 -35.49843 -34.50031 -34.23767 -33.30771 -32.25681 -29.66844 -28.28743 -26.46226 -22.89106 -22.11499 -19.16706 -18.13135 -17.55636 -16.49682 -16.37117 -15.42272 -14.87403 -14.38037 -14.18445 -13.72332 -13.65645 -13.39204 -12.54726 -12.31577 -12.08685 -11.71415 -11.36995 -11.31780 -10.93028 -10.88113 -10.72343 -10.60782 -10.55268 -10.45625 -10.25957 -10.22630 -9.42247 -9.02381 -8.81572 -7.93468 -6.90008 -5.56158 1.09760 1.24745 1.58118 1.91606 2.23972 2.95504 3.04806 3.10758 3.57685 3.88350 4.26842 4.44834 4.79916 5.05030 5.23251 5.31882 5.51811 5.66495 5.93092 6.09365 6.14220 6.31501 6.53108 6.75048 7.11730 7.46200 7.71359 8.66779 10.04326 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.005738 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.272547 B = 4878.497771 C = 6595.849652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.135 3.865 3 Si 0.923 3.077 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.269 1.269 7 C -1.024 5.024 8 H 0.112 0.888 9 S 2.695 3.305 10 O -0.984 6.984 11 O -0.990 6.990 12 N -1.064 6.064 13 C 0.236 3.764 14 C -0.154 4.154 15 C -0.058 4.058 16 C -0.067 4.067 17 Cl -0.074 7.074 18 C -0.057 4.057 19 C -0.127 4.127 20 Br -0.043 7.043 21 H 0.294 0.706 22 H 0.417 0.583 23 H 0.179 0.821 24 H 0.144 0.856 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.222 -9.426 4.077 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.194 1.194 7 C -1.157 5.157 8 H 0.130 0.870 9 S 2.796 3.204 10 O -0.974 6.974 11 O -0.980 6.980 12 N -0.805 5.805 13 C 0.133 3.867 14 C -0.176 4.176 15 C -0.077 4.077 16 C -0.096 4.096 17 Cl -0.045 7.045 18 C -0.078 4.078 19 C -0.211 4.211 20 Br 0.042 6.958 21 H 0.105 0.895 22 H 0.252 0.748 23 H 0.196 0.804 24 H 0.161 0.839 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.878 -9.957 3.847 13.884 hybrid contribution 1.129 1.132 -0.073 1.600 sum 10.007 -8.825 3.774 13.866 Atomic orbital electron populations 1.69888 1.06879 1.31138 1.38675 1.24762 0.94516 1.00931 0.88284 0.86075 0.80487 0.79984 0.78835 1.18286 1.19450 1.19360 1.30536 1.06233 1.11077 1.67892 0.86975 1.01353 0.72225 0.73481 0.73385 1.93425 1.71816 1.86967 1.45183 1.93410 1.72136 1.87147 1.45335 1.54622 1.52614 1.52193 1.21022 1.17259 0.89907 0.91634 0.87881 1.21983 0.98965 1.00671 0.95937 1.20998 0.95386 0.95563 0.95789 1.20648 1.01355 0.94770 0.92800 1.98346 1.67700 1.97136 1.41318 1.20674 0.95980 0.98894 0.92294 1.21487 1.08328 0.91290 0.99961 1.96646 1.91376 1.39379 1.68386 0.89532 0.74801 0.80395 0.83864 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.06 13.19 55.43 0.73 -22.33 15 2 C 0.13 3.47 5.46 -17.82 -0.10 3.37 15 3 Si 0.92 18.95 29.54 -169.99 -5.02 13.93 15 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 7 C -1.02 -25.65 7.57 30.60 0.23 -25.41 15 8 H 0.11 2.50 6.90 -52.48 -0.36 2.14 15 9 S 2.69 67.86 4.63 -107.50 -0.50 67.37 15 10 O -0.98 -27.30 17.43 -57.17 -1.00 -28.30 15 11 O -0.99 -27.71 18.02 -57.17 -1.03 -28.74 15 12 N -1.06 -20.98 5.51 32.44 0.18 -20.80 15 13 C 0.24 4.28 6.20 -83.72 -0.52 3.76 15 14 C -0.15 -2.72 8.92 -39.39 -0.35 -3.07 15 15 C -0.06 -0.84 9.82 -39.57 -0.39 -1.23 15 16 C -0.07 -0.92 6.32 -39.48 -0.25 -1.17 15 17 Cl -0.07 -0.87 28.95 -51.86 -1.50 -2.37 15 18 C -0.06 -0.78 9.56 -39.55 -0.38 -1.16 15 19 C -0.13 -1.98 6.24 -39.33 -0.25 -2.23 15 20 Br -0.04 -0.59 32.44 -68.01 -2.21 -2.80 15 21 H 0.29 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.42 7.24 7.90 -34.47 -0.27 6.97 15 23 H 0.18 3.41 4.48 -52.48 -0.24 3.17 15 24 H 0.14 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.14 1.59 8.06 -52.49 -0.42 1.17 15 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -30.95 274.82 -9.05 -40.00 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -0.85 Total: 7.04 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -2.00 Total: -27.14 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.91 Total: -43.13 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -2.03 Total: -57.04 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 16 Polarization: 67.86 SS G_CDS: -0.50 Total: 67.37 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.21 Total: -2.80 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.95 -9.05 -40.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131744521.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.677 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds