Wall clock time and date at job start Tue Mar 31 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00349 * 2 1 4 4 H 1.48500 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47089 * 300.00304 * 3 2 1 6 6 H 1.48497 * 109.46671 * 60.00332 * 3 2 1 7 7 C 1.37878 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00026 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99974 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40102 * 293.54260 * 9 7 2 11 11 O 1.42100 * 106.40192 * 66.46669 * 9 7 2 12 12 N 1.65609 * 107.21506 * 180.02562 * 9 7 2 13 13 C 1.39790 * 119.99660 * 67.64439 * 12 9 7 14 14 C 1.38880 * 120.06936 * 327.38188 * 13 12 9 15 15 C 1.38115 * 119.95032 * 179.70344 * 14 13 12 16 16 C 1.38389 * 120.07278 * 0.59363 * 15 14 13 17 17 Cl 1.73598 * 119.93321 * 179.69923 * 16 15 14 18 18 C 1.38367 * 120.13297 * 359.68558 * 16 15 14 19 19 C 1.38196 * 120.05022 * 0.02562 * 18 16 15 20 20 Br 1.89093 * 120.04057 * 179.97438 * 19 18 16 21 21 H 0.97007 * 120.00146 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99475 * 247.63791 * 12 9 7 23 23 H 1.08005 * 120.02324 * 359.97438 * 14 13 12 24 24 H 1.07993 * 119.96104 * 180.29462 * 15 14 13 25 25 H 1.07998 * 119.97190 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1233 -2.7200 -0.0005 10 8 0.4516 -2.7955 1.2494 11 8 0.4508 -2.7950 -1.2501 12 7 2.2481 -3.9355 -0.0005 13 6 3.0608 -4.1357 1.1191 14 6 3.4509 -3.0542 1.8981 15 6 4.2488 -3.2555 3.0074 16 6 4.6699 -4.5321 3.3362 17 17 5.6792 -4.7800 4.7267 18 6 4.2880 -5.6113 2.5590 19 6 3.4848 -5.4166 1.4514 20 35 2.9636 -6.8916 0.3891 21 1 -0.4851 0.8401 0.0004 22 1 2.3429 -4.5085 -0.7774 23 1 3.1269 -2.0569 1.6392 24 1 4.5483 -2.4152 3.6160 25 1 4.6178 -6.6064 2.8183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131744521.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:57 Heat of formation + Delta-G solvation = -94.733159 kcal Electronic energy + Delta-G solvation = -17087.095014 eV Core-core repulsion = 13877.053661 eV Total energy + Delta-G solvation = -3210.041353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74016 -37.76166 -37.51373 -36.33055 -35.88812 -35.22735 -33.46124 -30.88776 -29.58803 -28.40980 -24.18849 -23.38248 -21.01588 -19.82725 -19.03549 -18.36421 -17.65687 -17.05977 -16.43081 -16.03937 -15.86520 -15.22057 -14.97434 -14.65541 -14.05637 -13.90890 -13.36715 -13.19090 -13.02192 -12.90634 -12.67152 -12.61019 -12.50163 -12.25700 -12.12244 -11.81539 -11.52107 -11.40879 -11.26784 -10.92629 -10.00552 -9.25236 -8.80083 -7.55680 -0.15778 -0.01244 0.11697 0.39941 1.13330 1.36327 1.38591 1.56220 2.18258 2.35199 2.54120 2.62515 3.52031 3.61218 3.86417 3.95441 4.08788 4.31827 4.39754 4.76011 4.90145 4.99917 5.11973 5.23051 5.48121 5.82744 5.97587 6.71815 8.16807 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.005738 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.272547 B = 4878.497771 C = 6595.849652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.992 3.008 4 H -0.241 1.241 5 H -0.264 1.264 6 H -0.258 1.258 7 C -1.030 5.030 8 H 0.135 0.865 9 S 2.702 3.298 10 O -1.020 7.020 11 O -1.030 7.030 12 N -1.056 6.056 13 C 0.204 3.796 14 C -0.176 4.176 15 C -0.053 4.053 16 C -0.061 4.061 17 Cl -0.048 7.048 18 C -0.049 4.049 19 C -0.130 4.130 20 Br -0.028 7.028 21 H 0.301 0.699 22 H 0.425 0.575 23 H 0.160 0.840 24 H 0.168 0.832 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.679 -9.492 5.239 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.138 4.138 3 Si 0.810 3.190 4 H -0.163 1.163 5 H -0.189 1.189 6 H -0.182 1.182 7 C -1.165 5.165 8 H 0.152 0.848 9 S 2.804 3.196 10 O -1.010 7.010 11 O -1.020 7.020 12 N -0.801 5.801 13 C 0.103 3.897 14 C -0.198 4.198 15 C -0.072 4.072 16 C -0.089 4.089 17 Cl -0.019 7.019 18 C -0.070 4.070 19 C -0.214 4.214 20 Br 0.057 6.943 21 H 0.112 0.888 22 H 0.262 0.738 23 H 0.177 0.823 24 H 0.185 0.815 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.342 -10.062 5.017 15.970 hybrid contribution 0.461 1.002 -0.335 1.152 sum 11.802 -9.060 4.682 15.598 Atomic orbital electron populations 1.69984 1.08899 1.32649 1.40384 1.25998 0.95301 1.05222 0.87294 0.85062 0.79832 0.74812 0.79322 1.16325 1.18852 1.18210 1.30791 1.07379 1.10922 1.67376 0.84765 1.00764 0.72587 0.74210 0.72005 1.93365 1.73592 1.87736 1.46328 1.93347 1.74029 1.87998 1.46658 1.53880 1.52514 1.51390 1.22342 1.17476 0.91194 0.93091 0.87978 1.21917 1.00522 0.99838 0.97473 1.21228 0.94173 0.96995 0.94842 1.20757 1.00674 0.94364 0.93154 1.98364 1.66765 1.97013 1.39799 1.21004 0.94620 1.00267 0.91062 1.21617 1.08249 0.90872 1.00667 1.96657 1.91388 1.38078 1.68196 0.88821 0.73767 0.82264 0.81453 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.11 13.19 21.45 0.28 -49.83 15 2 C 0.08 3.93 5.46 84.66 0.46 4.39 15 3 Si 0.99 38.01 29.54 68.60 2.03 40.04 15 4 H -0.24 -8.40 7.11 99.48 0.71 -7.69 15 5 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 7 C -1.03 -52.11 7.57 67.73 0.51 -51.60 15 8 H 0.13 5.95 6.90 -2.91 -0.02 5.93 15 9 S 2.70 140.25 4.63 -56.49 -0.26 139.99 15 10 O -1.02 -58.70 17.43 -128.00 -2.23 -60.93 15 11 O -1.03 -59.88 18.02 -128.00 -2.31 -62.18 15 12 N -1.06 -42.29 5.51 -51.29 -0.28 -42.57 15 13 C 0.20 7.32 6.20 38.20 0.24 7.55 15 14 C -0.18 -6.12 8.92 22.39 0.20 -5.92 15 15 C -0.05 -1.45 9.82 22.28 0.22 -1.23 15 16 C -0.06 -1.49 6.32 22.34 0.14 -1.35 15 17 Cl -0.05 -0.97 28.95 -2.72 -0.08 -1.05 15 18 C -0.05 -1.20 9.56 22.29 0.21 -0.99 15 19 C -0.13 -3.88 6.24 22.43 0.14 -3.74 15 20 Br -0.03 -0.75 32.44 -20.37 -0.66 -1.41 15 21 H 0.30 15.21 8.31 -92.70 -0.77 14.44 15 22 H 0.43 15.03 7.90 -96.75 -0.76 14.27 15 23 H 0.16 6.14 4.48 -2.91 -0.01 6.12 15 24 H 0.17 3.63 8.06 -2.91 -0.02 3.60 15 25 H 0.17 3.18 8.06 -2.91 -0.02 3.16 15 Total: -1.00 -67.85 274.82 -0.88 -68.74 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.51 Total: 22.09 kcal Atomic # 6 Polarization: -55.00 SS G_CDS: 2.12 Total: -52.88 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: 0.00 Total: -92.41 kcal Atomic # 8 Polarization: -118.57 SS G_CDS: -4.54 Total: -123.11 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: 140.25 SS G_CDS: -0.26 Total: 139.99 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -0.66 Total: -1.41 kcal Total: -67.85 -0.88 -68.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131744521.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.998 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds