Wall clock time and date at job start Tue Mar 31 2020 22:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99545 * 2 1 4 4 H 1.48503 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47513 * 300.00287 * 3 2 1 6 6 H 1.48504 * 109.47098 * 60.00471 * 3 2 1 7 7 C 1.37873 * 120.00666 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00564 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99465 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40426 * 293.54381 * 9 7 2 11 11 O 1.42100 * 106.39981 * 66.46867 * 9 7 2 12 12 N 1.65609 * 107.21364 * 180.02562 * 9 7 2 13 13 C 1.39715 * 119.99913 * 67.64611 * 12 9 7 14 14 C 1.38872 * 120.07258 * 327.38479 * 13 12 9 15 15 C 1.38226 * 119.92243 * 179.76746 * 14 13 12 16 16 Cl 1.73604 * 119.96633 * 180.23343 * 15 14 13 17 17 C 1.38410 * 120.06593 * 0.48178 * 15 14 13 18 18 C 1.38253 * 120.13817 * 359.77321 * 17 15 14 19 19 C 1.38197 * 120.07854 * 359.97438 * 18 17 15 20 20 Br 1.89098 * 120.03170 * 179.97438 * 19 18 17 21 21 H 0.96995 * 120.00423 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99475 * 247.64096 * 12 9 7 23 23 H 1.08004 * 120.03747 * 359.97285 * 14 13 12 24 24 H 1.08001 * 119.92983 * 179.74616 * 17 15 14 25 25 H 1.07999 * 119.95802 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.4520 -2.7955 1.2494 11 8 0.4513 -2.7950 -1.2501 12 7 2.2487 -3.9353 -0.0005 13 6 3.0609 -4.1354 1.1185 14 6 3.4509 -3.0539 1.8976 15 6 4.2505 -3.2560 3.0068 16 17 4.7337 -1.9056 3.9851 17 6 4.6706 -4.5332 3.3354 18 6 4.2883 -5.6111 2.5586 19 6 3.4846 -5.4164 1.4514 20 35 2.9631 -6.8915 0.3894 21 1 -0.4850 0.8400 0.0004 22 1 2.3435 -4.5083 -0.7775 23 1 3.1269 -2.0566 1.6390 24 1 5.2988 -4.6880 4.2002 25 1 4.6182 -6.6063 2.8175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131746604.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:06 Heat of formation + Delta-G solvation = -71.793546 kcal Electronic energy + Delta-G solvation = -17233.448663 eV Core-core repulsion = 14024.402047 eV Total energy + Delta-G solvation = -3209.046616 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47860 -36.49787 -35.49482 -34.62769 -34.22051 -33.28331 -32.06072 -29.64370 -28.36712 -26.42807 -22.86436 -22.11381 -19.14882 -18.16840 -17.58993 -16.48584 -16.02219 -15.34319 -14.87258 -14.63141 -14.16760 -13.83110 -13.67866 -13.42768 -12.26170 -12.25419 -12.04835 -11.69129 -11.33460 -11.26838 -10.95141 -10.81727 -10.68776 -10.57795 -10.50265 -10.43650 -10.31124 -10.22363 -9.38867 -9.01132 -8.61801 -8.03072 -6.86998 -5.52821 1.01951 1.34536 1.65695 1.92851 2.23503 2.98672 3.07702 3.14485 3.56799 3.91792 4.28539 4.47857 4.78268 5.08237 5.25778 5.34192 5.52172 5.69190 5.90248 6.09810 6.13910 6.33831 6.53670 6.71467 7.14881 7.47165 7.74635 8.70285 10.07392 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.006429 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.033973 B = 4354.167597 C = 6096.675563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.136 3.864 3 Si 0.921 3.079 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.268 1.268 7 C -1.023 5.023 8 H 0.112 0.888 9 S 2.694 3.306 10 O -0.983 6.983 11 O -0.990 6.990 12 N -1.064 6.064 13 C 0.242 3.758 14 C -0.160 4.160 15 C 0.016 3.984 16 Cl -0.061 7.061 17 C -0.143 4.143 18 C -0.055 4.055 19 C -0.133 4.133 20 Br -0.047 7.047 21 H 0.294 0.706 22 H 0.418 0.582 23 H 0.181 0.819 24 H 0.139 0.861 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -9.950 4.336 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.083 4.083 3 Si 0.744 3.256 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.193 1.193 7 C -1.156 5.156 8 H 0.130 0.870 9 S 2.794 3.206 10 O -0.973 6.973 11 O -0.980 6.980 12 N -0.804 5.804 13 C 0.139 3.861 14 C -0.182 4.182 15 C -0.012 4.012 16 Cl -0.032 7.032 17 C -0.164 4.164 18 C -0.076 4.076 19 C -0.217 4.217 20 Br 0.038 6.962 21 H 0.104 0.896 22 H 0.253 0.747 23 H 0.197 0.803 24 H 0.157 0.843 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.091 -10.332 4.071 14.352 hybrid contribution 1.072 1.328 -0.112 1.710 sum 10.164 -9.004 3.958 14.144 Atomic orbital electron populations 1.69883 1.06854 1.31111 1.38770 1.24740 0.94500 1.00888 0.88222 0.86106 0.80633 0.80053 0.78825 1.18200 1.19428 1.19309 1.30516 1.06203 1.11057 1.67840 0.87038 1.01391 0.72253 0.73510 0.73415 1.93426 1.71795 1.86945 1.45154 1.93409 1.72124 1.87143 1.45312 1.54583 1.52541 1.52278 1.20990 1.16936 0.90138 0.91155 0.87827 1.21833 0.99377 1.01424 0.95603 1.20674 0.98351 0.88884 0.93292 1.98373 1.90300 1.45162 1.69408 1.20883 1.03566 0.90176 1.01769 1.20790 0.95261 0.99378 0.92121 1.21720 1.08523 0.91047 1.00434 1.96638 1.91477 1.39385 1.68737 0.89554 0.74720 0.80253 0.84273 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.46 13.19 55.43 0.73 -22.73 15 2 C 0.14 3.59 5.46 -17.82 -0.10 3.49 15 3 Si 0.92 19.55 29.54 -169.99 -5.02 14.53 15 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 15 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 15 7 C -1.02 -26.32 7.57 30.60 0.23 -26.08 15 8 H 0.11 2.59 6.90 -52.49 -0.36 2.23 15 9 S 2.69 69.14 4.63 -107.50 -0.50 68.64 15 10 O -0.98 -27.77 17.43 -57.17 -1.00 -28.76 15 11 O -0.99 -28.01 18.02 -57.17 -1.03 -29.04 15 12 N -1.06 -21.36 5.51 32.42 0.18 -21.18 15 13 C 0.24 4.49 6.19 -83.76 -0.52 3.97 15 14 C -0.16 -3.01 8.70 -39.35 -0.34 -3.35 15 15 C 0.02 0.25 6.32 -39.52 -0.25 0.00 15 16 Cl -0.06 -0.90 28.95 -51.86 -1.50 -2.40 15 17 C -0.14 -1.83 9.83 -39.51 -0.39 -2.22 15 18 C -0.05 -0.70 9.78 -39.59 -0.39 -1.09 15 19 C -0.13 -2.06 6.24 -39.32 -0.25 -2.31 15 20 Br -0.05 -0.65 32.44 -68.01 -2.21 -2.86 15 21 H 0.29 7.37 8.31 -40.82 -0.34 7.03 15 22 H 0.42 7.35 7.90 -34.47 -0.27 7.08 15 23 H 0.18 3.74 4.48 -52.48 -0.24 3.50 15 24 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 25 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -31.65 274.81 -9.05 -40.70 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.85 Total: 6.55 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -2.00 Total: -27.59 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.91 Total: -43.92 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -2.03 Total: -57.80 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 69.14 SS G_CDS: -0.50 Total: 68.64 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.21 Total: -2.86 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.65 -9.05 -40.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131746604.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.093 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds