Wall clock time and date at job start Tue Mar 31 2020 22:33:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 O 1.42100 * 110.54415 * 2 1
4 4 O 1.42094 * 110.54413 * 223.24262 * 2 1 3
5 5 C 1.76199 * 104.44794 * 111.62026 * 2 1 3
6 6 C 1.38265 * 119.98910 * 89.99859 * 5 2 1
7 7 C 1.38189 * 120.01625 * 180.02562 * 6 5 2
8 8 C 1.38380 * 119.98649 * 359.97438 * 7 6 5
9 9 Cl 1.73600 * 120.01430 * 179.97438 * 8 7 6
10 10 C 1.38323 * 119.97203 * 0.02562 * 8 7 6
11 11 S 1.76201 * 120.00708 * 179.97438 * 10 8 7
12 12 O 1.42095 * 106.40372 * 182.55977 * 11 10 8
13 13 O 1.42097 * 106.40456 * 49.63757 * 11 10 8
14 14 N 1.65608 * 107.21633 * 296.09690 * 11 10 8
15 15 C 1.36936 * 120.00019 * 295.33152 * 14 11 10
16 16 H 1.07998 * 120.00300 * 5.51338 * 15 14 11
17 17 C 1.38817 * 119.99746 * 185.50743 * 15 14 11
18 18 N 1.31614 * 120.00215 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 119.99476 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.46864 * 90.00657 * 19 17 15
21 21 H 1.48500 * 109.46822 * 210.00351 * 19 17 15
22 22 H 1.48492 * 109.47591 * 330.00483 * 19 17 15
23 23 C 1.38225 * 119.98689 * 270.25415 * 5 2 1
24 24 H 1.08997 * 109.47232 * 308.38484 * 1 2 3
25 25 H 1.09009 * 109.46788 * 68.37975 * 1 2 3
26 26 H 1.09001 * 109.47400 * 188.37581 * 1 2 3
27 27 H 1.08001 * 119.99316 * 0.02562 * 6 5 2
28 28 H 1.07998 * 120.00984 * 179.97438 * 7 6 5
29 29 H 0.97000 * 119.99860 * 115.32837 * 14 11 10
30 30 H 0.97001 * 119.99988 * 179.97438 * 18 17 15
31 31 H 1.07995 * 119.99683 * 0.02562 * 23 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9693 -0.9116
5 6 2.2536 -0.6287 1.5862
6 6 2.4260 -1.9886 1.7672
7 6 2.7703 -2.4823 3.0111
8 6 2.9430 -1.6153 4.0757
9 17 3.3748 -2.2348 5.6389
10 6 2.7704 -0.2550 3.8941
11 16 2.9894 0.8497 5.2492
12 8 2.6864 2.1492 4.7607
13 8 4.2358 0.5139 5.8433
14 7 1.8248 0.4881 6.3697
15 6 0.5022 0.6725 6.0664
16 1 0.2130 0.9684 5.0689
17 6 -0.4669 0.4790 7.0413
18 7 -0.1145 0.1187 8.2572
19 14 -2.2710 0.7312 6.6278
20 1 -2.8524 -0.5483 6.1483
21 1 -2.9986 1.1816 7.8414
22 1 -2.3960 1.7608 5.5651
23 6 2.4208 0.2373 2.6505
24 1 -0.3633 0.6381 0.8055
25 1 -0.3633 0.3787 -0.9555
26 1 -0.3634 -1.0167 0.1497
27 1 2.2916 -2.6651 0.9361
28 1 2.9045 -3.5445 3.1524
29 1 2.0795 0.1456 7.2407
30 1 -0.7917 -0.0162 8.9385
31 1 2.2816 1.2990 2.5098
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000152437265.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:33:39
Heat of formation + Delta-G solvation = -140.298893 kcal
Electronic energy + Delta-G solvation = -23212.604575 eV
Core-core repulsion = 19352.891830 eV
Total energy + Delta-G solvation = -3859.712744 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 338.988 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.50246 -38.25746 -38.19157 -37.73214 -37.03937 -36.77970 -36.48757 -32.87356
-32.62854 -32.36413 -30.26335 -26.44786 -24.78301 -24.56695 -20.99452 -20.13362
-19.83465 -19.33502 -18.36743 -17.70453 -17.58681 -17.18585 -17.05545 -16.60991
-16.30951 -15.90717 -15.37555 -15.32351 -14.94893 -14.23549 -13.94686 -13.91188
-13.83507 -13.57301 -13.20216 -13.15055 -13.09166 -13.06026 -13.02004 -12.94820
-12.89498 -12.60114 -12.33695 -12.20903 -12.07740 -11.86776 -11.85984 -11.56822
-10.73441 -10.35530 -10.17669 -8.30477 -5.88133 -0.97496 -0.72340 -0.42980
-0.27523 0.68426 1.48368 1.52441 1.61601 1.74022 1.87411 2.24890
2.59381 2.78053 2.92820 3.07388 3.22104 3.35925 3.66589 3.73962
4.00255 4.09300 4.13139 4.31836 4.44864 4.49282 4.62817 4.71504
4.99738 5.07442 5.35544 5.60896 6.73058 6.95503 7.31469 8.87499
Molecular weight = 338.99amu
Principal moments of inertia in cm(-1)
A = 0.011696 B = 0.005502 C = 0.004635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2393.328444 B = 5088.063232 C = 6039.081257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.626 4.626
2 S 2.510 3.490
3 O -0.975 6.975
4 O -0.957 6.957
5 C -0.684 4.684
6 C 0.038 3.962
7 C -0.147 4.147
8 C 0.086 3.914
9 Cl -0.041 7.041
10 C -0.699 4.699
11 S 2.653 3.347
12 O -0.987 6.987
13 O -0.995 6.995
14 N -0.961 5.961
15 C -0.313 4.313
16 H 0.110 0.890
17 C -0.012 4.012
18 N -0.923 5.923
19 Si 0.979 3.021
20 H -0.267 1.267
21 H -0.286 1.286
22 H -0.257 1.257
23 C 0.061 3.939
24 H 0.146 0.854
25 H 0.163 0.837
26 H 0.163 0.837
27 H 0.198 0.802
28 H 0.183 0.817
29 H 0.406 0.594
30 H 0.272 0.728
31 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.673 -7.433 -15.340 17.254
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.780 4.780
2 S 2.691 3.309
3 O -0.972 6.972
4 O -0.954 6.954
5 C -0.768 4.768
6 C 0.020 3.980
7 C -0.166 4.166
8 C 0.058 3.942
9 Cl -0.012 7.012
10 C -0.784 4.784
11 S 2.743 3.257
12 O -0.977 6.977
13 O -0.985 6.985
14 N -0.715 5.715
15 C -0.448 4.448
16 H 0.127 0.873
17 C -0.215 4.215
18 N -0.565 5.565
19 Si 0.803 3.197
20 H -0.192 1.192
21 H -0.211 1.211
22 H -0.180 1.180
23 C 0.041 3.959
24 H 0.164 0.836
25 H 0.181 0.819
26 H 0.181 0.819
27 H 0.215 0.785
28 H 0.200 0.800
29 H 0.242 0.758
30 H 0.082 0.918
31 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -1.425 -6.580 -15.806 17.180
hybrid contribution -0.992 -0.795 1.477 1.948
sum -2.416 -7.375 -14.329 16.296
Atomic orbital electron populations
1.30076 1.18671 1.14910 1.14376 1.05035 0.80354 0.73206 0.72330
1.93568 1.79911 1.37972 1.85781 1.93545 1.79688 1.61848 1.60309
1.31209 1.19376 1.03568 1.22634 1.21657 0.85607 0.93260 0.97499
1.21720 1.02070 1.01641 0.91179 1.21048 0.92114 0.92445 0.88632
1.98460 1.90232 1.87019 1.25474 1.31453 1.17991 1.10091 1.18912
1.03569 0.73042 0.75622 0.73503 1.93476 1.85351 1.37324 1.81578
1.93483 1.43057 1.85278 1.76678 1.51315 1.17426 1.79286 1.23425
1.19490 0.81577 1.44538 0.99173 0.87264 1.25970 1.03726 0.96925
0.94837 1.69802 1.35921 1.47625 1.03194 0.85131 0.77315 0.79136
0.78166 1.19208 1.21121 1.18044 1.20849 0.85009 1.00950 0.89105
0.83574 0.81852 0.81889 0.78474 0.80000 0.75819 0.91842 0.82192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 36.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.63 -5.19 10.80 113.37 1.22 -3.97 16
2 S 2.51 47.08 5.80 -56.49 -0.33 46.76 16
3 O -0.97 -27.10 17.13 -127.65 -2.19 -29.29 16
4 O -0.96 -20.86 17.12 -127.65 -2.19 -23.05 16
5 C -0.68 -16.56 5.66 22.27 0.13 -16.44 16
6 C 0.04 0.77 9.47 22.26 0.21 0.98 16
7 C -0.15 -3.49 9.83 22.29 0.22 -3.27 16
8 C 0.09 2.86 6.30 22.32 0.14 3.00 16
9 Cl -0.04 -1.46 26.47 -2.72 -0.07 -1.53 16
10 C -0.70 -26.21 5.82 22.29 0.13 -26.08 16
11 S 2.65 119.08 5.01 -56.49 -0.28 118.80 16
12 O -0.99 -47.98 16.68 -128.00 -2.14 -50.11 16
13 O -1.00 -46.99 16.58 -128.00 -2.12 -49.12 16
14 N -0.96 -46.27 5.45 -54.26 -0.30 -46.56 16
15 C -0.31 -15.43 9.63 84.03 0.81 -14.62 16
16 H 0.11 4.98 7.82 -2.91 -0.02 4.96 16
17 C -0.01 -0.61 5.50 84.86 0.47 -0.14 16
18 N -0.92 -49.02 13.07 21.65 0.28 -48.74 16
19 Si 0.98 38.47 29.55 68.60 2.03 40.50 16
20 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16
21 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16
22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16
23 C 0.06 1.98 8.97 22.27 0.20 2.18 16
24 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16
25 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16
26 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16
27 H 0.20 2.19 7.57 -2.91 -0.02 2.17 16
28 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16
29 H 0.41 20.33 8.04 -96.74 -0.78 19.55 16
30 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16
31 H 0.16 5.20 6.85 -2.91 -0.02 5.18 16
Total: -1.00 -76.03 317.24 -3.35 -79.38
By element:
Atomic # 1 Polarization: 20.88 SS G_CDS: 0.43 Total: 21.31 kcal
Atomic # 6 Polarization: -61.88 SS G_CDS: 3.53 Total: -58.35 kcal
Atomic # 7 Polarization: -95.29 SS G_CDS: -0.01 Total: -95.30 kcal
Atomic # 8 Polarization: -142.93 SS G_CDS: -8.63 Total: -151.56 kcal
Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal
Atomic # 16 Polarization: 166.16 SS G_CDS: -0.61 Total: 165.55 kcal
Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal
Total: -76.03 -3.35 -79.38 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000152437265.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.919 kcal
(2) G-P(sol) polarization free energy of solvation -76.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.952 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.347 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds