Wall clock time and date at job start Tue Mar 31 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38265 * 119.98523 * 269.72400 * 13 10 9 15 15 C 1.38213 * 120.03448 * 179.76409 * 14 13 10 16 16 C 1.38319 * 120.00237 * 0.51463 * 15 14 13 17 17 Br 1.89098 * 120.01675 * 179.72011 * 16 15 14 18 18 C 1.38416 * 119.96978 * 359.73781 * 16 15 14 19 19 Cl 1.73603 * 120.02040 * 180.02562 * 18 16 15 20 20 C 1.38208 * 119.98075 * 89.99904 * 13 10 9 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 23 23 H 1.07997 * 119.98193 * 0.02689 * 14 13 10 24 24 H 1.08001 * 119.99467 * 180.22868 * 15 14 13 25 25 H 1.07998 * 120.00400 * 359.95822 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3162 -3.4269 1.6035 15 6 5.0032 -3.5037 2.8004 16 6 4.4082 -4.0898 3.9030 17 35 5.3507 -4.2021 5.5385 18 6 3.1228 -4.5944 3.8085 19 17 2.3746 -5.3297 5.1917 20 6 2.4343 -4.5122 2.6112 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0068 23 1 4.7826 -2.9729 0.7417 24 1 6.0063 -3.1101 2.8734 25 1 1.4312 -4.9054 2.5369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156074781.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:15 Heat of formation + Delta-G solvation = -72.549805 kcal Electronic energy + Delta-G solvation = -16912.278754 eV Core-core repulsion = 13703.199343 eV Total energy + Delta-G solvation = -3209.079410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46811 -38.09252 -37.69010 -36.71722 -36.47751 -33.77581 -32.84011 -32.13453 -30.58722 -26.43024 -24.30006 -24.06232 -20.44582 -20.04255 -19.16205 -18.24965 -17.27432 -16.95491 -16.38046 -16.22067 -16.04695 -15.31826 -15.15915 -15.00467 -13.83125 -13.53621 -13.12388 -13.10824 -13.01756 -12.92665 -12.85409 -12.83234 -12.48872 -12.32277 -12.26075 -12.04313 -11.85274 -11.67214 -11.30758 -10.29575 -10.16438 -10.03405 -8.32165 -5.87261 -0.70990 -0.30717 -0.12257 0.16938 0.84807 1.52040 1.54515 1.62314 1.95922 2.32076 2.65246 2.92526 3.22097 3.35105 3.58181 3.85132 4.02768 4.18594 4.43132 4.50509 4.70206 4.87792 5.11122 5.34430 5.61349 6.73975 6.95648 7.31464 8.85654 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.004655 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.599988 B = 6014.154899 C = 6783.912051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.308 4.308 8 H 0.116 0.884 9 N -0.966 5.966 10 S 2.663 3.337 11 O -1.007 7.007 12 O -0.983 6.983 13 C -0.648 4.648 14 C -0.017 4.017 15 C -0.094 4.094 16 C -0.054 4.054 17 Br -0.006 7.006 18 C -0.045 4.045 19 Cl -0.037 7.037 20 C -0.021 4.021 21 H 0.273 0.727 22 H 0.407 0.593 23 H 0.164 0.836 24 H 0.181 0.819 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 -6.009 11.749 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.217 4.217 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.444 4.444 8 H 0.133 0.867 9 N -0.719 5.719 10 S 2.753 3.247 11 O -0.997 6.997 12 O -0.973 6.973 13 C -0.732 4.732 14 C -0.037 4.037 15 C -0.115 4.115 16 C -0.135 4.135 17 Br 0.080 6.920 18 C -0.075 4.075 19 Cl -0.008 7.008 20 C -0.042 4.042 21 H 0.082 0.918 22 H 0.243 0.757 23 H 0.182 0.818 24 H 0.198 0.802 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.328 -6.731 11.876 17.739 hybrid contribution -0.637 0.906 0.412 1.182 sum 10.691 -5.824 12.288 17.297 Atomic orbital electron populations 1.69788 1.07333 1.28791 1.50640 1.26003 0.96324 1.02369 0.97051 0.85119 0.78654 0.77354 0.78552 1.20125 1.21068 1.17542 1.19582 0.92732 0.83333 1.48735 0.86662 1.51434 1.16840 1.19198 1.84449 1.03625 0.72741 0.72444 0.75848 1.93444 1.60426 1.57604 1.88199 1.93481 1.61812 1.86975 1.55074 1.31714 1.08823 1.09931 1.22754 1.21337 0.91378 0.91965 0.98994 1.21588 1.01990 0.97797 0.90082 1.22248 0.94033 1.01992 0.95209 1.96763 1.73233 1.97275 1.24725 1.20893 0.93740 1.02392 0.90479 1.98379 1.81623 1.80676 1.40142 1.20866 1.00067 0.93755 0.89466 0.91799 0.75746 0.81833 0.80186 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.06 21.65 0.28 -48.29 15 2 C -0.01 -0.73 5.50 84.86 0.47 -0.27 15 3 Si 0.98 38.57 29.55 68.60 2.03 40.60 15 4 H -0.28 -10.78 7.11 99.48 0.71 -10.07 15 5 H -0.29 -11.25 7.11 99.48 0.71 -10.55 15 6 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 7 C -0.31 -14.72 9.63 84.04 0.81 -13.91 15 8 H 0.12 5.03 7.82 -2.91 -0.02 5.00 15 9 N -0.97 -44.29 5.75 -54.26 -0.31 -44.61 15 10 S 2.66 108.39 5.70 -56.49 -0.32 108.06 15 11 O -1.01 -43.94 17.28 -128.00 -2.21 -46.15 15 12 O -0.98 -43.31 16.98 -128.00 -2.17 -45.48 15 13 C -0.65 -22.35 5.89 22.27 0.13 -22.22 15 14 C -0.02 -0.50 9.52 22.27 0.21 -0.28 15 15 C -0.09 -2.33 9.79 22.28 0.22 -2.11 15 16 C -0.05 -1.41 6.23 22.33 0.14 -1.27 15 17 Br -0.01 -0.13 32.53 -20.37 -0.66 -0.79 15 18 C -0.05 -1.32 6.32 22.34 0.14 -1.18 15 19 Cl -0.04 -0.96 27.75 -2.72 -0.08 -1.04 15 20 C -0.02 -0.68 9.31 22.29 0.21 -0.47 15 21 H 0.27 13.63 8.31 -92.70 -0.77 12.86 15 22 H 0.41 19.46 8.02 -96.74 -0.78 18.68 15 23 H 0.16 4.45 7.61 -2.91 -0.02 4.43 15 24 H 0.18 3.13 8.06 -2.91 -0.02 3.10 15 25 H 0.15 4.86 7.62 -2.91 -0.02 4.84 15 Total: -1.00 -58.85 279.54 -0.64 -59.49 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.48 Total: 19.90 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 2.33 Total: -41.70 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -0.03 Total: -92.89 kcal Atomic # 8 Polarization: -87.25 SS G_CDS: -4.39 Total: -91.63 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.32 Total: 108.06 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.66 Total: -0.79 kcal Total: -58.85 -0.64 -59.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156074781.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal (2) G-P(sol) polarization free energy of solvation -58.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds