Wall clock time and date at job start Tue Mar 31 2020 22:51:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30671 * 1
3 3 Si 1.86799 * 120.00294 * 2 1
4 4 H 1.48502 * 109.47179 * 264.99350 * 3 2 1
5 5 H 1.48496 * 109.47236 * 144.98795 * 3 2 1
6 6 H 1.48508 * 109.46905 * 24.99244 * 3 2 1
7 7 C 1.40050 * 119.99870 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00068 * 186.65121 * 7 2 1
9 9 C 1.46382 * 119.99844 * 6.66187 * 7 2 1
10 10 O 1.21682 * 119.99861 * 8.46462 * 9 7 2
11 11 N 1.34780 * 119.99638 * 188.46710 * 9 7 2
12 12 C 1.47152 * 120.97652 * 174.77253 * 11 9 7
13 13 C 1.52882 * 108.60332 * 230.50128 * 12 11 9
14 14 O 1.42966 * 109.29530 * 307.93381 * 13 12 11
15 15 C 1.42958 * 114.16718 * 62.45386 * 14 13 12
16 16 H 1.09008 * 109.51310 * 57.33817 * 15 14 13
17 17 C 1.50696 * 109.51351 * 177.49420 * 15 14 13
18 18 C 1.38263 * 119.99518 * 219.74449 * 17 15 14
19 19 C 1.38221 * 120.02309 * 179.97438 * 18 17 15
20 20 C 1.38237 * 120.01030 * 359.97438 * 19 18 17
21 21 C 1.38312 * 119.98550 * 0.02562 * 20 19 18
22 22 Br 1.89098 * 120.00533 * 179.97438 * 21 20 19
23 23 C 1.38197 * 119.99663 * 39.46973 * 17 15 14
24 24 C 1.47149 * 120.98376 * 355.05239 * 11 9 7
25 25 H 0.97002 * 120.00132 * 0.02562 * 1 2 3
26 26 H 1.08997 * 109.68301 * 350.27687 * 12 11 9
27 27 H 1.09000 * 109.68257 * 110.83705 * 12 11 9
28 28 H 1.08997 * 109.58246 * 187.92507 * 13 12 11
29 29 H 1.08996 * 109.41251 * 67.84061 * 13 12 11
30 30 H 1.07999 * 119.99271 * 359.97438 * 18 17 15
31 31 H 1.08001 * 119.99317 * 180.02562 * 19 18 17
32 32 H 1.08000 * 120.01051 * 180.02562 * 20 19 18
33 33 H 1.07994 * 120.00424 * 0.02562 * 23 17 15
34 34 H 1.08998 * 109.67927 * 249.16831 * 24 11 9
35 35 H 1.09001 * 109.68304 * 9.68301 * 24 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2408 1.6177 0.0000
4 1 2.5941 1.9853 -1.3947
5 1 3.4813 1.4730 0.8033
6 1 1.3893 2.6809 0.5916
7 6 2.0069 -1.2129 0.0005
8 1 3.0814 -1.2160 0.1089
9 6 1.2824 -2.4763 -0.1460
10 8 0.0972 -2.4696 -0.4216
11 7 1.9280 -3.6471 0.0245
12 6 1.1993 -4.9252 -0.0046
13 6 1.5810 -5.7326 1.2362
14 8 3.0054 -5.8152 1.3264
15 6 3.6560 -4.5522 1.4850
16 1 3.2705 -4.0532 2.3742
17 6 5.1407 -4.7655 1.6301
18 6 5.8630 -4.0073 2.5330
19 6 7.2247 -4.2028 2.6668
20 6 7.8651 -5.1569 1.8983
21 6 7.1430 -5.9156 0.9950
22 35 8.0185 -7.2203 -0.0571
23 6 5.7792 -5.7227 0.8647
24 6 3.3815 -3.6846 0.2514
25 1 -0.4850 0.8401 -0.0004
26 1 0.1259 -4.7359 -0.0021
27 1 1.4722 -5.4830 -0.9004
28 1 1.1621 -6.7362 1.1620
29 1 1.1879 -5.2388 2.1248
30 1 5.3630 -3.2621 3.1339
31 1 7.7884 -3.6106 3.3726
32 1 8.9290 -5.3100 2.0032
33 1 5.2143 -6.3176 0.1624
34 1 3.8777 -4.1153 -0.6182
35 1 3.7525 -2.6740 0.4227
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000184506724.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:51:05
Heat of formation + Delta-G solvation = -46.715777 kcal
Electronic energy + Delta-G solvation = -21218.143543 eV
Core-core repulsion = 17841.530548 eV
Total energy + Delta-G solvation = -3376.612995 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.026 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.93981 -38.60032 -36.72617 -33.46537 -33.14693 -32.49845 -32.03517 -29.79306
-29.24272 -27.13627 -25.93150 -23.93510 -22.75206 -21.92818 -20.70046 -19.14577
-17.23349 -16.60577 -16.21745 -15.97669 -15.31507 -15.14438 -14.54914 -14.44326
-14.23909 -14.13546 -13.51957 -13.48604 -13.26936 -12.79441 -12.29857 -11.78742
-11.69857 -11.38467 -11.37507 -11.20181 -11.02331 -10.98686 -10.84078 -10.43960
-10.32665 -10.26878 -10.10407 -9.63001 -8.98126 -8.92107 -8.76991 -7.70117
-7.32454 -6.32598 -4.74336 1.00323 1.19891 1.53048 3.08645 3.15641
3.17345 3.46538 3.92610 3.99192 4.33154 4.45561 4.69551 4.83923
5.02068 5.16951 5.27144 5.33033 5.45572 5.47122 5.56834 5.59103
5.76302 5.85790 5.89229 6.01268 6.10828 6.20990 6.25985 6.33249
6.46293 6.53068 6.69895 7.35089 7.38320 7.44149 7.99587 8.22107
8.92356 9.28565 10.45696 10.63763
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.016100 B = 0.003357 C = 0.003032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1738.665360 B = 8339.949967 C = 9231.758354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.768 5.768
2 C 0.090 3.910
3 Si 0.906 3.094
4 H -0.270 1.270
5 H -0.264 1.264
6 H -0.279 1.279
7 C -0.547 4.547
8 H 0.073 0.927
9 C 0.562 3.438
10 O -0.576 6.576
11 N -0.644 5.644
12 C 0.085 3.915
13 C 0.052 3.948
14 O -0.381 6.381
15 C 0.115 3.885
16 H 0.074 0.926
17 C -0.065 4.065
18 C -0.091 4.091
19 C -0.115 4.115
20 C -0.094 4.094
21 C -0.093 4.093
22 Br -0.059 7.059
23 C -0.062 4.062
24 C 0.103 3.897
25 H 0.271 0.729
26 H 0.092 0.908
27 H 0.050 0.950
28 H 0.096 0.904
29 H 0.052 0.948
30 H 0.133 0.867
31 H 0.132 0.868
32 H 0.130 0.870
33 H 0.137 0.863
34 H 0.052 0.948
35 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.631 -11.619 4.776 20.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.396 5.396
2 C -0.130 4.130
3 Si 0.731 3.269
4 H -0.195 1.195
5 H -0.189 1.189
6 H -0.204 1.204
7 C -0.583 4.583
8 H 0.091 0.909
9 C 0.369 3.631
10 O -0.459 6.459
11 N -0.383 5.383
12 C -0.040 4.040
13 C -0.025 4.025
14 O -0.301 6.301
15 C 0.056 3.944
16 H 0.092 0.908
17 C -0.066 4.066
18 C -0.109 4.109
19 C -0.134 4.134
20 C -0.114 4.114
21 C -0.173 4.173
22 Br 0.027 6.973
23 C -0.082 4.082
24 C -0.022 4.022
25 H 0.081 0.919
26 H 0.111 0.889
27 H 0.068 0.932
28 H 0.114 0.886
29 H 0.070 0.930
30 H 0.151 0.849
31 H 0.150 0.850
32 H 0.148 0.852
33 H 0.155 0.845
34 H 0.070 0.930
35 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 16.185 -12.150 4.203 20.670
hybrid contribution 0.182 1.247 0.235 1.282
sum 16.366 -10.903 4.437 20.160
Atomic orbital electron populations
1.69966 1.07176 1.27663 1.34841 1.25702 0.94587 1.00321 0.92381
0.86404 0.80074 0.81235 0.79204 1.19495 1.18873 1.20425 1.20916
0.94175 0.89346 1.53854 0.90903 1.18276 0.86439 0.81929 0.76503
1.90588 1.16444 1.85967 1.52900 1.48312 1.06001 1.05661 1.78340
1.21745 0.99524 0.86313 0.96389 1.22921 0.80638 1.00730 0.98234
1.87848 1.19534 1.28350 1.94337 1.21342 0.87924 0.85741 0.99343
0.90834 1.19646 0.94497 0.96277 0.96218 1.21198 0.94234 0.98607
0.96879 1.21091 0.94469 0.98151 0.99715 1.21088 0.99945 0.95368
0.95012 1.21757 0.95292 0.99374 1.00841 1.96688 1.78442 1.53098
1.69088 1.20985 0.91836 0.96918 0.98472 1.22039 0.84008 1.01155
0.95006 0.91865 0.88930 0.93152 0.88566 0.92986 0.84903 0.84980
0.85232 0.84475 0.92984 0.87886
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -22.42 11.92 55.55 0.66 -21.76 16
2 C 0.09 2.44 5.48 -17.37 -0.10 2.35 16
3 Si 0.91 19.50 29.56 -169.99 -5.03 14.47 16
4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
5 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16
6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16
7 C -0.55 -14.87 8.85 -35.63 -0.32 -15.19 16
8 H 0.07 1.80 5.74 -52.49 -0.30 1.50 16
9 C 0.56 15.68 7.60 -12.98 -0.10 15.58 16
10 O -0.58 -18.30 14.63 5.20 0.08 -18.23 16
11 N -0.64 -14.47 3.03 -174.19 -0.53 -15.00 16
12 C 0.08 1.63 6.59 -3.75 -0.02 1.60 16
13 C 0.05 0.83 6.97 37.10 0.26 1.09 16
14 O -0.38 -6.22 9.69 -35.23 -0.34 -6.56 16
15 C 0.12 1.84 2.98 -27.73 -0.08 1.76 16
16 H 0.07 1.20 8.01 -51.92 -0.42 0.78 16
17 C -0.06 -0.89 4.98 -104.63 -0.52 -1.41 16
18 C -0.09 -1.07 9.67 -39.58 -0.38 -1.45 16
19 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16
20 C -0.09 -0.99 9.79 -39.55 -0.39 -1.38 16
21 C -0.09 -1.12 6.22 -39.52 -0.25 -1.37 16
22 Br -0.06 -0.64 33.70 -68.01 -2.29 -2.93 16
23 C -0.06 -0.83 9.10 -39.56 -0.36 -1.19 16
24 C 0.10 1.91 5.83 -3.54 -0.02 1.89 16
25 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16
26 H 0.09 1.95 7.12 -51.93 -0.37 1.58 16
27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
28 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16
29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
30 H 0.13 1.39 8.04 -52.49 -0.42 0.97 16
31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16
33 H 0.14 1.89 7.76 -52.49 -0.41 1.48 16
34 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16
35 H 0.10 1.98 5.41 -51.93 -0.28 1.70 16
LS Contribution 317.01 15.07 4.78 4.78
Total: -1.00 -32.84 317.01 -9.21 -42.05
By element:
Atomic # 1 Polarization: 6.32 SS G_CDS: -3.87 Total: 2.46 kcal
Atomic # 6 Polarization: 3.39 SS G_CDS: -2.67 Total: 0.72 kcal
Atomic # 7 Polarization: -36.89 SS G_CDS: 0.14 Total: -36.76 kcal
Atomic # 8 Polarization: -24.52 SS G_CDS: -0.27 Total: -24.78 kcal
Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal
Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -32.84 -9.21 -42.05 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184506724.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.665 kcal
(2) G-P(sol) polarization free energy of solvation -32.840 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.716 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds