Wall clock time and date at job start Tue Mar 31 2020 22:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47432 * 89.99897 * 3 2 1 5 5 H 1.48509 * 109.46693 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47418 * 329.99000 * 3 2 1 7 7 C 1.37873 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00126 * 358.18208 * 7 2 1 9 9 C 1.50710 * 119.99460 * 178.17803 * 7 2 1 10 10 O 1.42893 * 112.94591 * 55.35386 * 9 7 2 11 11 C 1.53943 * 113.73969 * 283.75965 * 9 7 2 12 12 N 1.47812 * 86.03674 * 222.08975 * 11 9 7 13 13 C 1.34778 * 134.45776 * 204.65312 * 12 11 9 14 14 O 1.21274 * 120.00369 * 179.86575 * 13 12 11 15 15 C 1.50706 * 119.99649 * 359.86136 * 13 12 11 16 16 C 1.50707 * 109.46889 * 180.02562 * 15 13 12 17 17 C 1.38237 * 120.00394 * 264.72745 * 16 15 13 18 18 C 1.38213 * 120.01123 * 179.72397 * 17 16 15 19 19 C 1.38270 * 120.01973 * 0.54941 * 18 17 16 20 20 C 1.38192 * 120.00567 * 359.72223 * 19 18 17 21 21 C 1.38302 * 120.00497 * 84.99905 * 16 15 13 22 22 Br 1.89101 * 120.01086 * 359.97438 * 21 16 15 23 23 C 1.47577 * 91.05143 * 24.54953 * 12 11 9 24 24 H 0.96997 * 120.00619 * 178.28251 * 1 2 3 25 25 H 0.96694 * 114.00533 * 294.08866 * 10 9 7 26 26 H 1.09000 * 113.77482 * 336.35033 * 11 9 7 27 27 H 1.09001 * 113.76770 * 107.74988 * 11 9 7 28 28 H 1.08997 * 109.47267 * 300.00007 * 15 13 12 29 29 H 1.08999 * 109.47490 * 60.00211 * 15 13 12 30 30 H 1.08000 * 119.99472 * 359.97267 * 17 16 15 31 31 H 1.08001 * 119.99259 * 180.29460 * 18 17 16 32 32 H 1.08001 * 119.99616 * 179.74916 * 19 18 17 33 33 H 1.08007 * 120.00378 * 179.97438 * 20 19 18 34 34 H 1.08996 * 113.77269 * 221.15139 * 23 12 11 35 35 H 1.09002 * 113.76345 * 89.75428 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4648 -2.1290 0.0306 9 6 3.5110 -1.1944 -0.0410 10 8 4.0975 -0.4288 1.0134 11 6 4.0927 -0.8817 -1.4315 12 7 5.0610 -1.9642 -1.1567 13 6 6.3011 -2.2556 -1.5968 14 8 6.8757 -3.2402 -1.1829 15 6 6.9737 -1.3580 -2.6033 16 6 8.3412 -1.9025 -2.9271 17 6 9.4521 -1.4237 -2.2581 18 6 10.7056 -1.9270 -2.5509 19 6 10.8504 -2.9014 -3.5212 20 6 9.7411 -3.3765 -4.1945 21 6 8.4855 -2.8771 -3.8977 22 35 6.9671 -3.5275 -4.8182 23 6 4.1261 -2.5960 -0.2055 24 1 -0.4851 -0.8396 -0.0252 25 1 3.9174 0.5196 0.9581 26 1 3.4103 -1.1009 -2.2527 27 1 4.5463 0.1066 -1.5059 28 1 6.3741 -1.3184 -3.5127 29 1 7.0706 -0.3549 -2.1880 30 1 9.3400 -0.6591 -1.5036 31 1 11.5727 -1.5561 -2.0246 32 1 11.8306 -3.2915 -3.7525 33 1 9.8543 -4.1374 -4.9526 34 1 4.6062 -2.9738 0.6971 35 1 3.4534 -3.3197 -0.6659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186830627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:37 Heat of formation + Delta-G solvation = -10.244058 kcal Electronic energy + Delta-G solvation = -21114.630830 eV Core-core repulsion = 17739.599367 eV Total energy + Delta-G solvation = -3375.031463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09305 -39.25990 -37.51538 -34.37140 -33.17354 -32.64703 -32.19443 -29.66291 -29.11707 -27.25068 -25.60179 -24.70077 -22.64599 -21.74309 -20.04117 -18.62280 -17.99434 -16.89051 -16.63462 -16.04665 -15.94290 -15.40108 -14.98248 -14.84051 -14.10070 -13.64241 -13.48390 -13.40829 -13.08296 -13.03752 -12.45017 -12.27609 -12.05027 -11.82600 -11.48775 -11.40608 -11.25299 -10.90949 -10.86163 -10.42560 -10.19017 -9.91203 -9.61926 -9.47694 -9.00940 -8.88179 -8.76482 -8.63097 -8.03523 -6.71402 -4.48201 0.97681 1.13480 1.58980 3.03143 3.05377 3.13720 3.27168 3.30425 3.60634 4.17177 4.49348 4.62753 4.67422 4.78808 4.91199 5.06908 5.17399 5.20933 5.34087 5.44119 5.53195 5.61847 5.76648 5.99514 6.01368 6.03898 6.20148 6.24347 6.27676 6.29534 6.41479 6.57629 6.66412 7.52146 8.06509 8.26108 8.45165 8.56423 8.60649 9.27770 10.64322 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.003752 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.103854 B = 7461.254536 C = 8098.700034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.036 3.964 3 Si 1.037 2.963 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.607 4.607 8 H 0.071 0.929 9 C 0.197 3.803 10 O -0.555 6.555 11 C 0.059 3.941 12 N -0.635 5.635 13 C 0.537 3.463 14 O -0.548 6.548 15 C -0.111 4.111 16 C -0.029 4.029 17 C -0.103 4.103 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.076 4.076 22 Br -0.049 7.049 23 C 0.129 3.871 24 H 0.274 0.726 25 H 0.352 0.648 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.362 -1.643 -10.866 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.172 4.172 3 Si 0.866 3.134 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.645 4.645 8 H 0.089 0.911 9 C 0.156 3.844 10 O -0.365 6.365 11 C -0.064 4.064 12 N -0.369 5.369 13 C 0.326 3.674 14 O -0.427 6.427 15 C -0.151 4.151 16 C -0.031 4.031 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.155 4.155 22 Br 0.037 6.963 23 C 0.007 3.993 24 H 0.084 0.916 25 H 0.202 0.798 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.092 0.908 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.267 -1.408 -10.866 21.301 hybrid contribution 0.201 -1.007 -0.059 1.028 sum 18.468 -2.415 -10.925 21.593 Atomic orbital electron populations 1.70769 1.06720 1.30961 1.44112 1.25808 0.96485 1.02483 0.92400 0.84218 0.75165 0.76091 0.77887 1.20082 1.19985 1.20757 1.22265 0.89012 0.96115 1.57124 0.91067 1.20568 0.92608 0.88590 0.82633 1.86487 1.77829 1.21024 1.51151 1.24775 0.88765 0.90076 1.02761 1.50177 1.13199 1.29284 1.44253 1.19764 0.80704 0.85414 0.81498 1.90670 1.64361 1.28712 1.58957 1.20799 0.93340 1.00290 1.00698 1.19243 0.94861 0.94852 0.94161 1.21039 0.91735 1.00398 0.98978 1.21225 0.97344 0.96485 0.97184 1.21117 0.98371 0.97614 0.96754 1.21050 0.90793 0.99411 0.99916 1.21690 0.92743 1.00577 1.00541 1.96706 1.38028 1.86884 1.74688 1.23221 0.87988 0.96837 0.91212 0.91613 0.79776 0.88804 0.90964 0.87510 0.87806 0.85179 0.85381 0.85285 0.85123 0.90817 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.70 55.43 0.76 -24.51 16 2 C 0.04 0.93 5.47 -17.82 -0.10 0.84 16 3 Si 1.04 21.81 24.78 -169.99 -4.21 17.60 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -4.96 4.72 56.52 0.27 -4.69 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.61 -15.62 9.05 -34.44 -0.31 -15.93 16 8 H 0.07 1.96 8.04 -52.49 -0.42 1.54 16 9 C 0.20 4.42 1.06 -90.84 -0.10 4.33 16 10 O -0.56 -12.64 13.26 -35.23 -0.47 -13.11 16 11 C 0.06 1.15 6.87 -2.84 -0.02 1.13 16 12 N -0.63 -12.58 3.61 -178.12 -0.64 -13.23 16 13 C 0.54 10.20 8.01 -10.98 -0.09 10.11 16 14 O -0.55 -12.02 16.76 5.56 0.09 -11.93 16 15 C -0.11 -1.65 5.03 -29.03 -0.15 -1.79 16 16 C -0.03 -0.41 4.38 -104.60 -0.46 -0.86 16 17 C -0.10 -1.25 9.68 -39.59 -0.38 -1.63 16 18 C -0.10 -1.06 10.05 -39.58 -0.40 -1.46 16 19 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 20 C -0.09 -1.05 9.79 -39.56 -0.39 -1.44 16 21 C -0.08 -1.04 6.22 -39.52 -0.25 -1.29 16 22 Br -0.05 -0.67 31.86 -68.01 -2.17 -2.83 16 23 C 0.13 2.73 8.23 -2.97 -0.02 2.71 16 24 H 0.27 7.72 8.71 -40.82 -0.36 7.36 16 25 H 0.35 7.26 4.32 45.56 0.20 7.45 16 26 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 27 H 0.07 1.27 6.57 -51.93 -0.34 0.93 16 28 H 0.11 1.48 6.89 -51.93 -0.36 1.12 16 29 H 0.10 1.33 8.05 -51.93 -0.42 0.91 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -31.05 315.89 -8.51 -39.56 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.58 Total: 10.55 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.05 Total: -6.87 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.12 Total: -37.74 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.37 Total: -25.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.21 Total: 17.60 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.17 Total: -2.83 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.05 -8.51 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186830627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.317 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds