Wall clock time and date at job start Tue Mar 31 2020 22:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47432 * 89.99897 * 3 2 1 5 5 H 1.48509 * 109.46693 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47418 * 329.99000 * 3 2 1 7 7 C 1.37873 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00126 * 358.18208 * 7 2 1 9 9 C 1.50710 * 119.99460 * 178.17803 * 7 2 1 10 10 O 1.42893 * 112.94591 * 55.35386 * 9 7 2 11 11 C 1.53943 * 113.73969 * 283.75965 * 9 7 2 12 12 N 1.47812 * 86.03674 * 222.08975 * 11 9 7 13 13 C 1.34778 * 134.45776 * 204.65312 * 12 11 9 14 14 O 1.21274 * 120.00369 * 179.86575 * 13 12 11 15 15 C 1.50706 * 119.99649 * 359.86136 * 13 12 11 16 16 C 1.50707 * 109.46889 * 180.02562 * 15 13 12 17 17 C 1.38237 * 120.00394 * 264.72745 * 16 15 13 18 18 C 1.38213 * 120.01123 * 179.72397 * 17 16 15 19 19 C 1.38270 * 120.01973 * 0.54941 * 18 17 16 20 20 C 1.38192 * 120.00567 * 359.72223 * 19 18 17 21 21 C 1.38302 * 120.00497 * 84.99905 * 16 15 13 22 22 Br 1.89101 * 120.01086 * 359.97438 * 21 16 15 23 23 C 1.47577 * 91.05143 * 24.54953 * 12 11 9 24 24 H 0.96997 * 120.00619 * 178.28251 * 1 2 3 25 25 H 0.96694 * 114.00533 * 294.08866 * 10 9 7 26 26 H 1.09000 * 113.77482 * 336.35033 * 11 9 7 27 27 H 1.09001 * 113.76770 * 107.74988 * 11 9 7 28 28 H 1.08997 * 109.47267 * 300.00007 * 15 13 12 29 29 H 1.08999 * 109.47490 * 60.00211 * 15 13 12 30 30 H 1.08000 * 119.99472 * 359.97267 * 17 16 15 31 31 H 1.08001 * 119.99259 * 180.29460 * 18 17 16 32 32 H 1.08001 * 119.99616 * 179.74916 * 19 18 17 33 33 H 1.08007 * 120.00378 * 179.97438 * 20 19 18 34 34 H 1.08996 * 113.77269 * 221.15139 * 23 12 11 35 35 H 1.09002 * 113.76345 * 89.75428 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4648 -2.1290 0.0306 9 6 3.5110 -1.1944 -0.0410 10 8 4.0975 -0.4288 1.0134 11 6 4.0927 -0.8817 -1.4315 12 7 5.0610 -1.9642 -1.1567 13 6 6.3011 -2.2556 -1.5968 14 8 6.8757 -3.2402 -1.1829 15 6 6.9737 -1.3580 -2.6033 16 6 8.3412 -1.9025 -2.9271 17 6 9.4521 -1.4237 -2.2581 18 6 10.7056 -1.9270 -2.5509 19 6 10.8504 -2.9014 -3.5212 20 6 9.7411 -3.3765 -4.1945 21 6 8.4855 -2.8771 -3.8977 22 35 6.9671 -3.5275 -4.8182 23 6 4.1261 -2.5960 -0.2055 24 1 -0.4851 -0.8396 -0.0252 25 1 3.9174 0.5196 0.9581 26 1 3.4103 -1.1009 -2.2527 27 1 4.5463 0.1066 -1.5059 28 1 6.3741 -1.3184 -3.5127 29 1 7.0706 -0.3549 -2.1880 30 1 9.3400 -0.6591 -1.5036 31 1 11.5727 -1.5561 -2.0246 32 1 11.8306 -3.2915 -3.7525 33 1 9.8543 -4.1374 -4.9526 34 1 4.6062 -2.9738 0.6971 35 1 3.4534 -3.3197 -0.6659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186830627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:36 Heat of formation + Delta-G solvation = -31.688209 kcal Electronic energy + Delta-G solvation = -21115.560718 eV Core-core repulsion = 17739.599367 eV Total energy + Delta-G solvation = -3375.961351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51717 -40.40333 -39.01286 -36.10607 -34.65880 -34.17442 -33.11536 -30.94399 -30.26913 -28.58236 -27.18395 -26.45719 -23.50464 -22.77209 -21.68654 -20.18497 -19.89196 -18.14912 -17.89587 -17.59377 -17.13312 -16.65640 -16.37978 -15.93839 -15.71660 -15.11854 -14.79086 -14.42157 -14.33295 -14.32061 -13.91566 -13.88465 -13.66684 -13.10672 -13.07499 -12.54341 -12.34478 -12.09305 -12.06756 -11.84794 -11.67335 -11.31423 -11.19182 -11.10808 -10.82715 -10.48704 -9.86537 -9.68764 -9.63890 -8.79856 -6.59157 0.10369 0.28301 0.64260 1.37383 1.49893 1.59331 1.64823 1.86773 2.43861 2.65256 2.84966 3.30307 3.51334 3.64684 3.76177 3.79246 4.04300 4.22692 4.34285 4.35694 4.38558 4.43398 4.55028 4.60122 4.63910 4.72081 4.80194 4.91148 4.97251 5.23189 5.37181 5.44981 5.61721 5.87396 5.90992 6.38795 6.71271 6.80299 7.09409 7.27672 8.54430 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.003752 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.103854 B = 7461.254536 C = 8098.700034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 1.070 2.930 4 H -0.260 1.260 5 H -0.224 1.224 6 H -0.285 1.285 7 C -0.614 4.614 8 H 0.033 0.967 9 C 0.189 3.811 10 O -0.563 6.563 11 C 0.073 3.927 12 N -0.636 5.636 13 C 0.536 3.464 14 O -0.581 6.581 15 C -0.103 4.103 16 C -0.056 4.056 17 C -0.114 4.114 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.102 4.102 21 C -0.097 4.097 22 Br -0.063 7.063 23 C 0.123 3.877 24 H 0.257 0.743 25 H 0.363 0.637 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.818 -0.006 -11.612 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.891 3.109 4 H -0.185 1.185 5 H -0.148 1.148 6 H -0.211 1.211 7 C -0.651 4.651 8 H 0.051 0.949 9 C 0.148 3.852 10 O -0.373 6.373 11 C -0.049 4.049 12 N -0.370 5.370 13 C 0.327 3.673 14 O -0.461 6.461 15 C -0.143 4.143 16 C -0.058 4.058 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.176 4.176 22 Br 0.023 6.977 23 C 0.001 3.999 24 H 0.066 0.934 25 H 0.214 0.786 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.163 0.837 34 H 0.084 0.916 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.742 0.209 -11.624 24.655 hybrid contribution -0.831 -1.653 0.223 1.864 sum 20.910 -1.444 -11.401 23.860 Atomic orbital electron populations 1.70916 1.08157 1.29989 1.47116 1.27364 0.96295 1.06500 0.91060 0.83898 0.76111 0.71565 0.79352 1.18528 1.14804 1.21109 1.22389 0.91262 0.94789 1.56701 0.94870 1.20506 0.90557 0.89747 0.84413 1.86463 1.77397 1.21992 1.51475 1.24594 0.88547 0.91410 1.00331 1.50162 1.13564 1.29176 1.44106 1.20532 0.79880 0.85464 0.81439 1.90648 1.64924 1.30356 1.60210 1.20793 0.93646 1.00304 0.99511 1.19329 0.94961 0.96077 0.95426 1.21330 0.92052 1.00843 0.99054 1.21646 0.97666 0.95860 0.96886 1.21561 0.99299 0.96732 0.95633 1.21359 0.90538 0.99742 1.00506 1.21892 0.93163 1.01335 1.01222 1.96677 1.39037 1.87087 1.74949 1.23137 0.88628 0.96494 0.91674 0.93416 0.78565 0.88339 0.87954 0.86798 0.85369 0.83929 0.82272 0.81975 0.83725 0.91630 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.99 13.70 21.45 0.29 -53.70 16 2 C -0.01 -0.65 5.47 84.65 0.46 -0.18 16 3 Si 1.07 41.80 24.78 68.60 1.70 43.50 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.22 -6.88 4.72 99.48 0.47 -6.41 16 6 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.61 -32.14 9.05 25.60 0.23 -31.91 16 8 H 0.03 1.93 8.04 -2.91 -0.02 1.90 16 9 C 0.19 8.28 1.06 -10.88 -0.01 8.27 16 10 O -0.56 -24.36 13.26 -148.98 -1.98 -26.34 16 11 C 0.07 2.66 6.87 86.44 0.59 3.26 16 12 N -0.64 -24.22 3.61 -839.66 -3.03 -27.25 16 13 C 0.54 19.48 8.01 87.66 0.70 20.18 16 14 O -0.58 -25.02 16.76 -3.01 -0.05 -25.07 16 15 C -0.10 -2.79 5.03 29.11 0.15 -2.65 16 16 C -0.06 -1.45 4.38 -19.85 -0.09 -1.53 16 17 C -0.11 -2.44 9.68 22.26 0.22 -2.23 16 18 C -0.10 -1.71 10.05 22.27 0.22 -1.48 16 19 C -0.11 -1.84 10.05 22.27 0.22 -1.61 16 20 C -0.10 -2.09 9.79 22.29 0.22 -1.87 16 21 C -0.10 -2.49 6.22 22.31 0.14 -2.35 16 22 Br -0.06 -1.68 31.86 -20.37 -0.65 -2.32 16 23 C 0.12 5.23 8.23 86.49 0.71 5.94 16 24 H 0.26 15.27 8.71 -92.71 -0.81 14.46 16 25 H 0.36 13.69 4.32 -74.06 -0.32 13.37 16 26 H 0.10 3.50 8.09 -2.39 -0.02 3.48 16 27 H 0.10 3.10 6.57 -2.39 -0.02 3.09 16 28 H 0.11 2.90 6.89 -2.39 -0.02 2.88 16 29 H 0.13 2.79 8.05 -2.39 -0.02 2.77 16 30 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.09 3.71 8.09 -2.39 -0.02 3.69 16 Total: -1.00 -69.38 315.89 0.59 -68.80 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.53 Total: 30.55 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.77 Total: -8.17 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.74 Total: -80.94 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.03 Total: -51.41 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.70 Total: 43.50 kcal Atomic # 35 Polarization: -1.68 SS G_CDS: -0.65 Total: -2.32 kcal Total: -69.38 0.59 -68.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186830627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.110 kcal (2) G-P(sol) polarization free energy of solvation -69.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds