Wall clock time and date at job start Tue Mar 31 2020 22:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46824 * 239.99847 * 3 2 1 5 5 H 1.48498 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46824 * 120.00373 * 3 2 1 7 7 C 1.37876 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00254 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00178 * 0.02562 * 7 2 1 10 10 O 1.42906 * 113.41615 * 46.79445 * 9 7 2 11 11 C 1.53494 * 114.21123 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98993 * 139.65399 * 11 9 7 13 13 C 1.34776 * 136.06245 * 152.84480 * 12 11 9 14 14 O 1.21284 * 119.99241 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00426 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.47158 * 180.02562 * 15 13 12 17 17 C 1.38264 * 119.99250 * 90.00187 * 16 15 13 18 18 C 1.38224 * 120.01600 * 180.02562 * 17 16 15 19 19 C 1.38242 * 120.00951 * 0.28256 * 18 17 16 20 20 C 1.38299 * 119.99110 * 359.44029 * 19 18 17 21 21 Br 1.89103 * 120.01247 * 180.30350 * 20 19 18 22 22 C 1.38198 * 119.99339 * 270.01972 * 16 15 13 23 23 C 1.47075 * 87.88266 * 333.10239 * 12 11 9 24 24 H 0.97001 * 120.00257 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99440 * 313.20657 * 10 9 7 26 26 H 1.09005 * 113.46733 * 24.87340 * 11 9 7 27 27 H 1.09005 * 113.47049 * 254.43562 * 11 9 7 28 28 H 1.09003 * 109.46721 * 59.99943 * 15 13 12 29 29 H 1.09005 * 109.47068 * 300.00553 * 15 13 12 30 30 H 1.07992 * 119.99122 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.99032 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.00126 * 179.70365 * 19 18 17 33 33 H 1.08001 * 120.00806 * 359.96594 * 22 16 15 34 34 H 1.08995 * 113.46311 * 141.67747 * 23 12 11 35 35 H 1.08999 * 113.46592 * 272.12206 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.1899 -2.5423 -0.9557 11 6 2.1486 -3.7442 0.0005 12 7 1.2098 -4.3575 0.9521 13 6 0.8344 -5.6113 1.2736 14 8 1.3286 -6.5583 0.6991 15 6 -0.1985 -5.8367 2.3475 16 6 -0.4370 -7.3155 2.5127 17 6 0.3210 -8.0416 3.4126 18 6 0.1030 -9.3981 3.5641 19 6 -0.8691 -10.0304 2.8116 20 6 -1.6314 -9.3034 1.9155 21 35 -2.9671 -10.1662 0.8920 22 6 -1.4131 -7.9457 1.7643 23 6 0.8560 -3.0000 1.3939 24 1 -0.4850 0.8400 0.0004 25 1 -0.3737 -1.7565 -0.9535 26 1 3.1383 -3.5658 0.4211 27 1 2.1849 -4.2533 -0.9627 28 1 -1.1303 -5.3474 2.0638 29 1 0.1591 -5.4193 3.2889 30 1 1.0841 -7.5489 3.9967 31 1 0.6956 -9.9650 4.2669 32 1 -1.0361 -11.0913 2.9266 33 1 -2.0053 -7.3783 1.0616 34 1 -0.2046 -2.8776 1.6131 35 1 1.4979 -2.6213 2.1893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188293843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:51 Heat of formation + Delta-G solvation = -21.113220 kcal Electronic energy + Delta-G solvation = -20648.803726 eV Core-core repulsion = 17273.300942 eV Total energy + Delta-G solvation = -3375.502785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96368 -39.13211 -37.33990 -34.03715 -33.15570 -32.23259 -32.04615 -29.59163 -29.09177 -27.25264 -25.20324 -25.04305 -22.57820 -21.68816 -20.10093 -18.28922 -17.48090 -16.87511 -16.33556 -15.76329 -15.53187 -15.12943 -14.75868 -14.62204 -14.17185 -13.58533 -13.42453 -13.20392 -13.07767 -12.75006 -12.41154 -12.11479 -11.73441 -11.59406 -11.36959 -11.16487 -11.08389 -11.05642 -10.89105 -10.53396 -10.37439 -10.30237 -9.70992 -9.27854 -8.93168 -8.81541 -8.70488 -8.43116 -7.88974 -6.44258 -4.54797 1.04139 1.20840 1.53844 3.13216 3.14608 3.19586 3.21671 3.36331 3.73795 4.14845 4.57483 4.71657 4.78391 4.94154 5.07355 5.18069 5.20040 5.36386 5.53634 5.56871 5.74046 5.82321 5.90123 6.09088 6.14850 6.21601 6.36960 6.42999 6.46857 6.58008 6.64752 6.73653 7.06736 7.58919 7.76404 8.45882 8.50027 8.71573 9.16795 9.45090 10.62390 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.025839 B = 0.002491 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.353989 B =11239.683122 C =11826.528290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.572 6.572 11 C 0.107 3.893 12 N -0.635 5.635 13 C 0.536 3.464 14 O -0.556 6.556 15 C -0.098 4.098 16 C -0.049 4.049 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.088 4.088 21 Br -0.058 7.058 22 C -0.075 4.075 23 C 0.071 3.929 24 H 0.275 0.725 25 H 0.394 0.606 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 -15.205 8.107 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.385 6.385 11 C -0.015 4.015 12 N -0.369 5.369 13 C 0.326 3.674 14 O -0.436 6.436 15 C -0.138 4.138 16 C -0.050 4.050 17 C -0.109 4.109 18 C -0.133 4.133 19 C -0.117 4.117 20 C -0.167 4.167 21 Br 0.027 6.973 22 C -0.095 4.095 23 C -0.052 4.052 24 H 0.085 0.915 25 H 0.250 0.750 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.337 -16.682 7.334 18.989 hybrid contribution 0.440 1.655 0.473 1.776 sum -4.897 -15.028 7.807 17.628 Atomic orbital electron populations 1.69246 1.06207 1.28366 1.50050 1.25074 0.95029 0.99932 0.92969 0.86362 0.79487 0.81509 0.79020 1.19816 1.20966 1.19861 1.21394 0.93906 0.89762 1.52235 0.90974 1.19483 0.85418 0.91044 0.84245 1.86053 1.44968 1.48289 1.59166 1.23327 0.93801 0.92174 0.92217 1.49719 1.42295 1.04680 1.40185 1.19782 0.83020 0.81112 0.83530 1.90673 1.57671 1.40618 1.54647 1.20612 1.00430 0.93050 0.99726 1.19369 0.95153 0.94808 0.95704 1.21147 0.97948 0.94197 0.97581 1.21082 0.97910 0.94613 0.99707 1.21044 0.95444 0.99804 0.95360 1.21683 0.98937 0.95265 1.00805 1.96687 1.50623 1.79097 1.70853 1.20983 0.97748 0.92625 0.98157 1.24191 1.00437 0.77852 1.02769 0.91482 0.74969 0.89729 0.91591 0.87865 0.87999 0.85496 0.85173 0.85252 0.85058 0.91687 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.14 11.01 55.43 0.61 -21.53 16 2 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 3 Si 0.91 18.94 29.54 -169.99 -5.02 13.91 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.53 -13.04 8.69 -34.44 -0.30 -13.33 16 8 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.24 5.60 1.57 -91.39 -0.14 5.46 16 10 O -0.57 -14.48 13.53 -35.23 -0.48 -14.96 16 11 C 0.11 2.30 8.03 -8.51 -0.07 2.23 16 12 N -0.64 -12.94 3.69 -185.36 -0.68 -13.63 16 13 C 0.54 10.43 8.07 -10.99 -0.09 10.34 16 14 O -0.56 -12.56 16.81 5.55 0.09 -12.47 16 15 C -0.10 -1.43 5.66 -29.04 -0.16 -1.60 16 16 C -0.05 -0.69 4.37 -104.63 -0.46 -1.15 16 17 C -0.09 -1.12 9.70 -39.58 -0.38 -1.50 16 18 C -0.11 -1.24 10.05 -39.59 -0.40 -1.64 16 19 C -0.10 -1.10 9.79 -39.56 -0.39 -1.49 16 20 C -0.09 -1.13 6.22 -39.52 -0.25 -1.38 16 21 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 16 22 C -0.08 -1.06 9.44 -39.55 -0.37 -1.44 16 23 C 0.07 1.44 7.82 -8.63 -0.07 1.37 16 24 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 25 H 0.39 10.05 6.33 45.56 0.29 10.34 16 26 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -28.18 327.77 -9.48 -37.66 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.47 Total: 11.53 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.17 Total: -2.48 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.07 Total: -35.16 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.38 Total: -27.43 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.18 -9.48 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.546 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds