Wall clock time and date at job start Tue Mar 31 2020 22:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46824 * 239.99847 * 3 2 1 5 5 H 1.48498 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46824 * 120.00373 * 3 2 1 7 7 C 1.37876 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00254 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00178 * 0.02562 * 7 2 1 10 10 O 1.42906 * 113.41615 * 46.79445 * 9 7 2 11 11 C 1.53494 * 114.21123 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98993 * 139.65399 * 11 9 7 13 13 C 1.34776 * 136.06245 * 152.84480 * 12 11 9 14 14 O 1.21284 * 119.99241 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00426 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.47158 * 180.02562 * 15 13 12 17 17 C 1.38264 * 119.99250 * 90.00187 * 16 15 13 18 18 C 1.38224 * 120.01600 * 180.02562 * 17 16 15 19 19 C 1.38242 * 120.00951 * 0.28256 * 18 17 16 20 20 C 1.38299 * 119.99110 * 359.44029 * 19 18 17 21 21 Br 1.89103 * 120.01247 * 180.30350 * 20 19 18 22 22 C 1.38198 * 119.99339 * 270.01972 * 16 15 13 23 23 C 1.47075 * 87.88266 * 333.10239 * 12 11 9 24 24 H 0.97001 * 120.00257 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99440 * 313.20657 * 10 9 7 26 26 H 1.09005 * 113.46733 * 24.87340 * 11 9 7 27 27 H 1.09005 * 113.47049 * 254.43562 * 11 9 7 28 28 H 1.09003 * 109.46721 * 59.99943 * 15 13 12 29 29 H 1.09005 * 109.47068 * 300.00553 * 15 13 12 30 30 H 1.07992 * 119.99122 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.99032 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.00126 * 179.70365 * 19 18 17 33 33 H 1.08001 * 120.00806 * 359.96594 * 22 16 15 34 34 H 1.08995 * 113.46311 * 141.67747 * 23 12 11 35 35 H 1.08999 * 113.46592 * 272.12206 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.1899 -2.5423 -0.9557 11 6 2.1486 -3.7442 0.0005 12 7 1.2098 -4.3575 0.9521 13 6 0.8344 -5.6113 1.2736 14 8 1.3286 -6.5583 0.6991 15 6 -0.1985 -5.8367 2.3475 16 6 -0.4370 -7.3155 2.5127 17 6 0.3210 -8.0416 3.4126 18 6 0.1030 -9.3981 3.5641 19 6 -0.8691 -10.0304 2.8116 20 6 -1.6314 -9.3034 1.9155 21 35 -2.9671 -10.1662 0.8920 22 6 -1.4131 -7.9457 1.7643 23 6 0.8560 -3.0000 1.3939 24 1 -0.4850 0.8400 0.0004 25 1 -0.3737 -1.7565 -0.9535 26 1 3.1383 -3.5658 0.4211 27 1 2.1849 -4.2533 -0.9627 28 1 -1.1303 -5.3474 2.0638 29 1 0.1591 -5.4193 3.2889 30 1 1.0841 -7.5489 3.9967 31 1 0.6956 -9.9650 4.2669 32 1 -1.0361 -11.0913 2.9266 33 1 -2.0053 -7.3783 1.0616 34 1 -0.2046 -2.8776 1.6131 35 1 1.4979 -2.6213 2.1893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188293843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:51 Heat of formation + Delta-G solvation = -38.034812 kcal Electronic energy + Delta-G solvation = -20649.537502 eV Core-core repulsion = 17273.300942 eV Total energy + Delta-G solvation = -3376.236560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41323 -40.34603 -38.91307 -35.87285 -34.23053 -34.11634 -32.99194 -30.92463 -30.25135 -28.61024 -26.90301 -26.66864 -23.51120 -22.84261 -21.67609 -19.92095 -19.24932 -17.93762 -17.83556 -17.18691 -16.91417 -16.60083 -16.07925 -16.03873 -15.74090 -15.00787 -14.59587 -14.43760 -14.30932 -14.10121 -13.91130 -13.71233 -13.39447 -13.04447 -12.77974 -12.75418 -12.30166 -12.22062 -12.16289 -12.10280 -11.84171 -11.40044 -11.30490 -10.95529 -10.64458 -10.24066 -9.88524 -9.66958 -9.56876 -8.26625 -6.43641 0.09530 0.25391 0.59686 1.49350 1.51819 1.58652 1.63528 1.96920 2.41490 2.64110 2.95856 3.53575 3.58767 3.80201 3.85851 4.03855 4.16540 4.21740 4.27727 4.42173 4.47681 4.55059 4.63067 4.76189 4.80101 4.88159 4.95343 4.98522 5.17068 5.25781 5.31564 5.47463 5.73686 5.82553 5.92126 6.61980 6.89660 7.14686 7.30555 7.49976 8.79220 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.025839 B = 0.002491 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.353989 B =11239.683122 C =11826.528290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.034 3.966 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.588 6.588 11 C 0.106 3.894 12 N -0.638 5.638 13 C 0.531 3.469 14 O -0.591 6.591 15 C -0.087 4.087 16 C -0.069 4.069 17 C -0.097 4.097 18 C -0.109 4.109 19 C -0.096 4.096 20 C -0.102 4.102 21 Br -0.053 7.053 22 C -0.096 4.096 23 C 0.087 3.913 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.104 0.896 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -15.621 9.913 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.175 3.825 10 O -0.401 6.401 11 C -0.017 4.017 12 N -0.371 5.371 13 C 0.323 3.677 14 O -0.473 6.473 15 C -0.127 4.127 16 C -0.071 4.071 17 C -0.116 4.116 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.181 4.181 21 Br 0.032 6.968 22 C -0.116 4.116 23 C -0.035 4.035 24 H 0.087 0.913 25 H 0.245 0.755 26 H 0.121 0.879 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.786 -17.106 9.153 19.983 hybrid contribution 0.263 1.707 -0.132 1.732 sum -4.522 -15.399 9.021 18.411 Atomic orbital electron populations 1.69310 1.07139 1.29032 1.50256 1.25747 0.95751 1.02613 0.92599 0.85426 0.78255 0.77950 0.78923 1.20174 1.20863 1.19024 1.21633 0.94196 0.90551 1.52769 0.90767 1.19787 0.85499 0.91627 0.85553 1.86038 1.45564 1.48117 1.60389 1.23327 0.94760 0.91488 0.92147 1.49776 1.42146 1.05187 1.39961 1.20660 0.83157 0.80037 0.83861 1.90646 1.59072 1.41478 1.56143 1.20599 0.98965 0.94126 0.98989 1.19434 0.96102 0.94603 0.96933 1.21456 0.97866 0.95010 0.97234 1.21495 0.97493 0.94241 0.99548 1.21412 0.94819 1.00935 0.94432 1.21864 0.99616 0.95114 1.01526 1.96677 1.50478 1.78725 1.70902 1.21043 0.98450 0.93426 0.98676 1.23965 1.00800 0.77447 1.01336 0.91333 0.75478 0.87857 0.93349 0.87208 0.85208 0.83766 0.81788 0.82956 0.85991 0.91524 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.98 11.01 21.45 0.24 -44.75 16 2 C 0.03 1.60 5.40 84.66 0.46 2.05 16 3 Si 0.97 38.17 29.54 68.60 2.03 40.20 16 4 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.55 -26.77 8.69 25.60 0.22 -26.55 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.22 10.12 1.57 -11.29 -0.02 10.10 16 10 O -0.59 -30.34 13.53 -148.98 -2.02 -32.36 16 11 C 0.11 4.53 8.03 83.18 0.67 5.20 16 12 N -0.64 -25.65 3.69 -859.21 -3.17 -28.82 16 13 C 0.53 20.37 8.07 87.66 0.71 21.08 16 14 O -0.59 -26.76 16.81 -3.04 -0.05 -26.81 16 15 C -0.09 -2.44 5.66 29.10 0.16 -2.28 16 16 C -0.07 -1.88 4.37 -19.87 -0.09 -1.97 16 17 C -0.10 -2.19 9.70 22.27 0.22 -1.98 16 18 C -0.11 -2.06 10.05 22.27 0.22 -1.83 16 19 C -0.10 -1.97 9.79 22.29 0.22 -1.76 16 20 C -0.10 -2.54 6.22 22.31 0.14 -2.40 16 21 Br -0.05 -1.21 33.70 -20.37 -0.69 -1.89 16 22 C -0.10 -2.69 9.44 22.29 0.21 -2.48 16 23 C 0.09 3.48 7.82 83.09 0.65 4.13 16 24 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16 25 H 0.39 20.30 6.33 -74.06 -0.47 19.83 16 26 H 0.10 3.98 8.10 -2.38 -0.02 3.96 16 27 H 0.05 2.20 8.14 -2.38 -0.02 2.19 16 28 H 0.11 2.91 8.09 -2.39 -0.02 2.89 16 29 H 0.13 2.85 8.09 -2.38 -0.02 2.83 16 30 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.10 3.58 8.10 -2.39 -0.02 3.56 16 Total: -1.00 -60.03 327.77 0.76 -59.27 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.65 Total: 33.82 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 3.77 Total: 1.34 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -2.94 Total: -73.56 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -2.07 Total: -59.17 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 35 Polarization: -1.21 SS G_CDS: -0.69 Total: -1.89 kcal Total: -60.03 0.76 -59.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -60.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds