Wall clock time and date at job start Tue Mar 31 2020 22:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48498 * 109.46919 * 269.99881 * 3 2 1 5 5 H 1.48503 * 109.46834 * 29.99340 * 3 2 1 6 6 H 1.48494 * 109.47345 * 149.99797 * 3 2 1 7 7 C 1.38890 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00354 * 185.46851 * 7 2 1 9 9 N 1.37142 * 119.99987 * 5.47610 * 7 2 1 10 10 C 1.34775 * 119.99977 * 233.62187 * 9 7 2 11 11 O 1.21280 * 120.00155 * 186.00058 * 10 9 7 12 12 C 1.50702 * 119.99801 * 5.99637 * 10 9 7 13 13 N 1.46498 * 109.46903 * 175.00296 * 12 10 9 14 14 N 1.37655 * 121.65817 * 270.02713 * 13 12 10 15 15 C 1.29101 * 118.66323 * 179.97438 * 14 13 12 16 16 Cl 1.73598 * 127.13519 * 179.97438 * 15 14 13 17 17 S 1.77305 * 105.72953 * 0.02562 * 15 14 13 18 18 C 1.34687 * 121.65431 * 90.00462 * 13 12 10 19 19 O 1.21850 * 127.71594 * 0.02562 * 18 13 12 20 20 C 1.39786 * 120.00009 * 53.61585 * 9 7 2 21 21 C 1.38958 * 120.07656 * 188.28284 * 20 9 7 22 22 C 1.38091 * 119.92195 * 179.79640 * 21 20 9 23 23 C 1.38313 * 120.07627 * 0.46103 * 22 21 20 24 24 C 1.38311 * 120.15472 * 359.79478 * 23 22 21 25 25 C 1.38086 * 120.07759 * 359.97087 * 24 23 22 26 26 H 0.96998 * 120.00379 * 5.00936 * 1 2 3 27 27 H 1.09001 * 109.47033 * 55.00699 * 12 10 9 28 28 H 1.08991 * 109.47820 * 295.00639 * 12 10 9 29 29 H 1.07994 * 120.04229 * 0.02562 * 21 20 9 30 30 H 1.07994 * 119.96056 * 180.25664 * 22 21 20 31 31 H 1.07995 * 119.92282 * 179.76978 * 23 22 21 32 32 H 1.07995 * 119.95982 * 179.97438 * 24 23 22 33 33 H 1.08003 * 120.03843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0086 -1.2028 0.0005 8 1 3.0849 -1.2049 0.0897 9 7 1.3276 -2.3878 -0.1123 10 6 1.5135 -3.3615 0.8009 11 8 0.9968 -4.4473 0.6434 12 6 2.3635 -3.1008 2.0178 13 7 2.3127 -4.2639 2.9071 14 7 1.3602 -4.3774 3.8944 15 6 1.3685 -5.4277 4.6451 16 17 0.2794 -5.7946 5.9462 17 16 2.7240 -6.4169 4.0726 18 6 3.1954 -5.2754 2.7990 19 8 4.1130 -5.3823 2.0044 20 6 0.4406 -2.5859 -1.1744 21 6 -0.3766 -3.7095 -1.1989 22 6 -1.2547 -3.8998 -2.2475 23 6 -1.3145 -2.9785 -3.2774 24 6 -0.4988 -1.8617 -3.2589 25 6 0.3782 -1.6626 -2.2110 26 1 -0.4850 0.8368 -0.0733 27 1 1.9855 -2.2243 2.5440 28 1 3.3939 -2.9235 1.7101 29 1 -0.3278 -4.4312 -0.3970 30 1 -1.8931 -4.7706 -2.2652 31 1 -1.9995 -3.1317 -4.0982 32 1 -0.5478 -1.1446 -4.0649 33 1 1.0152 -0.7905 -2.1974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191507937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:08 Heat of formation + Delta-G solvation = 45.709392 kcal Electronic energy + Delta-G solvation = -24411.094391 eV Core-core repulsion = 20592.129465 eV Total energy + Delta-G solvation = -3818.964926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.70891 -39.57663 -37.94094 -37.36454 -37.13794 -35.15522 -32.90637 -32.05746 -29.77778 -29.47887 -27.58265 -25.36828 -24.98855 -22.37301 -21.50076 -20.83922 -19.77208 -19.46219 -18.07529 -17.32628 -16.87505 -15.85308 -15.70226 -15.60654 -15.43422 -15.10839 -14.47992 -14.42353 -13.87733 -13.54387 -13.44610 -13.10887 -12.95847 -12.48285 -12.32805 -12.10712 -11.86883 -11.70148 -11.50531 -11.38552 -11.20196 -10.90677 -10.57511 -10.54741 -10.17245 -10.12942 -9.79442 -9.39804 -8.94350 -8.82857 -8.36695 -7.87420 -7.02815 -6.44917 -4.69152 0.08978 0.76812 0.93324 1.20005 1.89927 2.30261 2.48498 2.70488 2.95726 3.04969 3.07303 3.51618 3.83473 4.29006 4.51872 4.63073 5.04757 5.41194 5.50875 5.66663 5.72732 5.81156 5.94026 6.09441 6.59138 6.63332 6.77391 7.01051 7.03078 7.11693 7.26180 7.40650 7.52130 7.54847 7.64496 7.93991 8.27659 8.68760 9.00323 9.41051 10.35029 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004046 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.738007 B = 6918.355298 C = 7816.928931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.061 3.939 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.385 4.385 8 H 0.097 0.903 9 N -0.375 5.375 10 C 0.477 3.523 11 O -0.558 6.558 12 C 0.131 3.869 13 N -0.400 5.400 14 N -0.197 5.197 15 C 0.118 3.882 16 Cl 0.077 6.923 17 S -0.028 6.028 18 C 0.507 3.493 19 O -0.440 6.440 20 C 0.193 3.807 21 C -0.179 4.179 22 C -0.117 4.117 23 C -0.171 4.171 24 C -0.120 4.120 25 C -0.104 4.104 26 H 0.277 0.723 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.163 0.837 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -5.187 7.957 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.151 4.151 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.511 4.511 8 H 0.114 0.886 9 N -0.083 5.083 10 C 0.267 3.733 11 O -0.442 6.442 12 C 0.005 3.995 13 N -0.224 5.224 14 N -0.017 5.017 15 C -0.206 4.206 16 Cl 0.104 6.896 17 S 0.198 5.802 18 C 0.185 3.815 19 O -0.312 6.312 20 C 0.097 3.903 21 C -0.199 4.199 22 C -0.136 4.136 23 C -0.190 4.190 24 C -0.139 4.139 25 C -0.124 4.124 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.179 0.821 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.898 -5.912 7.775 9.950 hybrid contribution -0.117 1.611 -0.318 1.646 sum 1.781 -4.301 7.457 8.791 Atomic orbital electron populations 1.69955 1.06191 1.29019 1.41210 1.25636 0.95342 1.00210 0.93900 0.86068 0.79688 0.80904 0.79115 1.19673 1.20417 1.18788 1.19418 0.91803 0.81997 1.57924 0.88572 1.40882 1.35703 1.13677 1.18008 1.20755 0.83329 0.85070 0.84181 1.90347 1.51454 1.25467 1.76911 1.21594 1.03421 0.85470 0.89028 1.49995 1.23241 1.21189 1.28011 1.73552 1.09114 1.19939 0.99065 1.27435 0.99095 0.95184 0.98904 1.98459 1.59185 1.91917 1.40003 1.86771 1.29765 1.27471 1.36241 1.23125 0.85733 0.84526 0.88147 1.90990 1.29852 1.72427 1.37971 1.18132 0.91152 0.93582 0.87449 1.22326 0.96733 0.99838 1.00959 1.20841 0.98941 0.98747 0.95082 1.20778 1.02002 0.96576 0.99639 1.20744 0.97446 0.97468 0.98216 1.20753 0.99944 0.99248 0.92502 0.91216 0.84663 0.85430 0.82062 0.87657 0.88021 0.87626 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.58 11.62 55.49 0.64 -19.93 16 2 C 0.06 1.39 3.85 -17.49 -0.07 1.32 16 3 Si 0.92 17.56 29.56 -169.99 -5.02 12.54 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.38 -8.82 7.40 -14.93 -0.11 -8.93 16 8 H 0.10 2.06 7.78 -52.49 -0.41 1.65 16 9 N -0.37 -9.00 2.66 -58.98 -0.16 -9.16 16 10 C 0.48 10.89 7.60 -10.99 -0.08 10.80 16 11 O -0.56 -13.70 12.95 5.56 0.07 -13.63 16 12 C 0.13 2.44 5.29 -5.19 -0.03 2.42 16 13 N -0.40 -7.11 2.95 -64.48 -0.19 -7.30 16 14 N -0.20 -3.26 11.59 32.94 0.38 -2.88 16 15 C 0.12 1.62 8.67 51.61 0.45 2.07 16 16 Cl 0.08 0.81 29.33 -51.86 -1.52 -0.71 16 17 S -0.03 -0.38 23.22 -107.50 -2.50 -2.88 16 18 C 0.51 8.92 8.61 54.01 0.47 9.38 16 19 O -0.44 -8.64 17.64 5.05 0.09 -8.55 16 20 C 0.19 4.73 5.71 -83.70 -0.48 4.26 16 21 C -0.18 -4.24 8.96 -39.37 -0.35 -4.59 16 22 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 16 23 C -0.17 -3.34 10.04 -39.53 -0.40 -3.74 16 24 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 25 C -0.10 -2.40 7.86 -39.37 -0.31 -2.71 16 26 H 0.28 6.51 8.32 -40.82 -0.34 6.17 16 27 H 0.14 2.39 8.05 -51.93 -0.42 1.97 16 28 H 0.13 2.17 7.79 -51.93 -0.40 1.76 16 29 H 0.16 4.02 4.76 -55.00 -0.26 3.76 16 30 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 2.92 6.03 -52.48 -0.32 2.60 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -28.04 323.79 -7.24 -35.28 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -2.21 Total: 7.76 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.71 Total: 4.59 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.68 Total: -39.27 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.16 Total: -22.18 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.50 Total: -2.88 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -1.52 Total: -0.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.04 -7.24 -35.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191507937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.992 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds