Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48498 * 109.46919 * 269.99881 * 3 2 1 5 5 H 1.48503 * 109.46834 * 29.99340 * 3 2 1 6 6 H 1.48494 * 109.47345 * 149.99797 * 3 2 1 7 7 C 1.38890 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00354 * 185.46851 * 7 2 1 9 9 N 1.37142 * 119.99987 * 5.47610 * 7 2 1 10 10 C 1.34775 * 119.99977 * 233.62187 * 9 7 2 11 11 O 1.21280 * 120.00155 * 186.00058 * 10 9 7 12 12 C 1.50702 * 119.99801 * 5.99637 * 10 9 7 13 13 N 1.46498 * 109.46903 * 175.00296 * 12 10 9 14 14 N 1.37655 * 121.65817 * 270.02713 * 13 12 10 15 15 C 1.29101 * 118.66323 * 179.97438 * 14 13 12 16 16 Cl 1.73598 * 127.13519 * 179.97438 * 15 14 13 17 17 S 1.77305 * 105.72953 * 0.02562 * 15 14 13 18 18 C 1.34687 * 121.65431 * 90.00462 * 13 12 10 19 19 O 1.21850 * 127.71594 * 0.02562 * 18 13 12 20 20 C 1.39786 * 120.00009 * 53.61585 * 9 7 2 21 21 C 1.38958 * 120.07656 * 188.28284 * 20 9 7 22 22 C 1.38091 * 119.92195 * 179.79640 * 21 20 9 23 23 C 1.38313 * 120.07627 * 0.46103 * 22 21 20 24 24 C 1.38311 * 120.15472 * 359.79478 * 23 22 21 25 25 C 1.38086 * 120.07759 * 359.97087 * 24 23 22 26 26 H 0.96998 * 120.00379 * 5.00936 * 1 2 3 27 27 H 1.09001 * 109.47033 * 55.00699 * 12 10 9 28 28 H 1.08991 * 109.47820 * 295.00639 * 12 10 9 29 29 H 1.07994 * 120.04229 * 0.02562 * 21 20 9 30 30 H 1.07994 * 119.96056 * 180.25664 * 22 21 20 31 31 H 1.07995 * 119.92282 * 179.76978 * 23 22 21 32 32 H 1.07995 * 119.95982 * 179.97438 * 24 23 22 33 33 H 1.08003 * 120.03843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0086 -1.2028 0.0005 8 1 3.0849 -1.2049 0.0897 9 7 1.3276 -2.3878 -0.1123 10 6 1.5135 -3.3615 0.8009 11 8 0.9968 -4.4473 0.6434 12 6 2.3635 -3.1008 2.0178 13 7 2.3127 -4.2639 2.9071 14 7 1.3602 -4.3774 3.8944 15 6 1.3685 -5.4277 4.6451 16 17 0.2794 -5.7946 5.9462 17 16 2.7240 -6.4169 4.0726 18 6 3.1954 -5.2754 2.7990 19 8 4.1130 -5.3823 2.0044 20 6 0.4406 -2.5859 -1.1744 21 6 -0.3766 -3.7095 -1.1989 22 6 -1.2547 -3.8998 -2.2475 23 6 -1.3145 -2.9785 -3.2774 24 6 -0.4988 -1.8617 -3.2589 25 6 0.3782 -1.6626 -2.2110 26 1 -0.4850 0.8368 -0.0733 27 1 1.9855 -2.2243 2.5440 28 1 3.3939 -2.9235 1.7101 29 1 -0.3278 -4.4312 -0.3970 30 1 -1.8931 -4.7706 -2.2652 31 1 -1.9995 -3.1317 -4.0982 32 1 -0.5478 -1.1446 -4.0649 33 1 1.0152 -0.7905 -2.1974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191507937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = 29.536464 kcal Electronic energy + Delta-G solvation = -24411.795702 eV Core-core repulsion = 20592.129465 eV Total energy + Delta-G solvation = -3819.666236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13900 -41.18740 -39.21087 -38.95439 -38.31015 -36.89546 -34.27287 -33.82544 -31.45390 -31.07389 -29.10165 -27.11335 -26.28280 -23.93457 -23.15029 -22.33587 -21.29810 -20.86361 -19.72204 -18.70338 -18.36577 -17.44373 -17.34709 -17.00382 -16.85334 -16.57080 -16.16247 -16.00364 -15.18463 -15.10709 -14.76661 -14.69544 -14.59200 -14.09091 -13.97853 -13.43048 -13.22514 -13.09118 -13.02029 -12.92580 -12.80981 -12.50049 -12.10139 -11.78539 -11.76085 -11.42620 -11.11656 -11.07307 -10.65127 -10.21298 -9.93757 -9.56908 -8.77480 -8.18734 -6.48720 -1.10242 -0.43758 -0.25338 -0.01537 0.56117 0.61606 0.77792 1.41383 1.45304 1.48901 1.58835 1.84248 2.22966 2.66724 2.91118 3.26364 3.35458 3.82118 4.07682 4.21085 4.27899 4.30193 4.33309 4.55861 4.87490 4.94529 5.08340 5.32236 5.38007 5.68710 5.74534 5.81228 5.84493 5.96381 6.01111 6.21258 6.54035 6.93340 7.25611 7.66978 8.62403 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004046 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.738007 B = 6918.355298 C = 7816.928931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.029 3.971 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.393 4.393 8 H 0.107 0.893 9 N -0.387 5.387 10 C 0.464 3.536 11 O -0.584 6.584 12 C 0.142 3.858 13 N -0.408 5.408 14 N -0.228 5.228 15 C 0.127 3.873 16 Cl 0.113 6.887 17 S 0.041 5.959 18 C 0.486 3.514 19 O -0.475 6.475 20 C 0.163 3.837 21 C -0.207 4.207 22 C -0.119 4.119 23 C -0.163 4.163 24 C -0.119 4.119 25 C -0.122 4.122 26 H 0.276 0.724 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -5.251 8.218 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.519 4.519 8 H 0.124 0.876 9 N -0.096 5.096 10 C 0.255 3.745 11 O -0.469 6.469 12 C 0.015 3.985 13 N -0.232 5.232 14 N -0.048 5.048 15 C -0.197 4.197 16 Cl 0.141 6.859 17 S 0.267 5.733 18 C 0.165 3.835 19 O -0.351 6.351 20 C 0.067 3.933 21 C -0.227 4.227 22 C -0.137 4.137 23 C -0.182 4.182 24 C -0.138 4.138 25 C -0.142 4.142 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.150 0.850 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.562 -5.996 8.066 10.171 hybrid contribution -0.135 1.473 -0.321 1.513 sum 1.427 -4.523 7.745 9.082 Atomic orbital electron populations 1.70077 1.07809 1.29593 1.42689 1.26357 0.95760 1.02890 0.92927 0.85097 0.78850 0.76708 0.78978 1.19589 1.20829 1.17365 1.19760 0.92333 0.82098 1.57742 0.87596 1.41151 1.35827 1.14200 1.18383 1.21433 0.83499 0.84587 0.85013 1.90315 1.52605 1.26313 1.77685 1.21425 1.03141 0.86230 0.87695 1.49990 1.23733 1.21209 1.28256 1.73608 1.09654 1.21566 0.99977 1.27937 0.99036 0.94318 0.98440 1.98481 1.57931 1.91475 1.38050 1.86559 1.28656 1.24563 1.33473 1.23685 0.85540 0.85307 0.88984 1.90960 1.30950 1.73617 1.39580 1.18496 0.92017 0.94439 0.88326 1.22336 0.98438 0.99884 1.02014 1.21196 0.98233 0.99924 0.94364 1.21203 1.01666 0.95300 1.00007 1.21155 0.96303 0.98331 0.98015 1.20807 1.01100 0.98902 0.93440 0.91405 0.84108 0.84259 0.83881 0.84951 0.83913 0.84546 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.79 11.62 21.65 0.25 -43.53 16 2 C 0.03 1.33 3.85 84.91 0.33 1.66 16 3 Si 0.98 35.87 29.56 68.60 2.03 37.90 16 4 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 7 C -0.39 -18.38 7.40 84.02 0.62 -17.76 16 8 H 0.11 4.59 7.78 -2.91 -0.02 4.57 16 9 N -0.39 -19.27 2.66 -458.90 -1.22 -20.49 16 10 C 0.46 22.04 7.60 87.66 0.67 22.70 16 11 O -0.58 -29.96 12.95 -3.03 -0.04 -30.00 16 12 C 0.14 5.45 5.29 85.63 0.45 5.90 16 13 N -0.41 -14.74 2.95 -476.13 -1.40 -16.14 16 14 N -0.23 -7.51 11.59 -49.69 -0.58 -8.08 16 15 C 0.13 3.32 8.67 130.64 1.13 4.45 16 16 Cl 0.11 2.14 29.33 -2.72 -0.08 2.06 16 17 S 0.04 1.07 23.22 -56.49 -1.31 -0.25 16 18 C 0.49 17.23 8.61 129.81 1.12 18.35 16 19 O -0.48 -19.15 17.64 -4.83 -0.09 -19.23 16 20 C 0.16 8.24 5.71 38.22 0.22 8.45 16 21 C -0.21 -10.06 8.96 22.41 0.20 -9.86 16 22 C -0.12 -4.82 10.04 22.25 0.22 -4.59 16 23 C -0.16 -5.98 10.04 22.30 0.22 -5.76 16 24 C -0.12 -4.71 10.04 22.25 0.22 -4.49 16 25 C -0.12 -5.69 7.86 22.41 0.18 -5.52 16 26 H 0.28 13.20 8.32 -92.71 -0.77 12.43 16 27 H 0.14 5.13 8.05 -2.39 -0.02 5.11 16 28 H 0.14 4.89 7.79 -2.39 -0.02 4.88 16 29 H 0.14 7.47 4.76 -42.73 -0.20 7.27 16 30 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 33 H 0.11 5.39 6.03 -2.91 -0.02 5.38 16 Total: -1.00 -62.45 323.79 4.15 -58.30 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.00 Total: 25.92 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.58 Total: 13.54 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.95 Total: -88.24 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.12 Total: -49.24 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -1.31 Total: -0.25 kcal Atomic # 17 Polarization: 2.14 SS G_CDS: -0.08 Total: 2.06 kcal Total: -62.45 4.15 -58.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191507937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.837 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds