Wall clock time and date at job start Tue Mar 31 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38268 * 119.98413 * 269.72825 * 13 10 9 15 15 C 1.38207 * 120.03012 * 179.72460 * 14 13 10 16 16 C 1.38348 * 119.99568 * 0.55161 * 15 14 13 17 17 Cl 1.73603 * 120.01494 * 179.70642 * 16 15 14 18 18 C 1.38421 * 119.96702 * 359.71617 * 16 15 14 19 19 Br 1.89096 * 120.01580 * 180.02562 * 18 16 15 20 20 C 1.38208 * 119.98075 * 89.99904 * 13 10 9 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 23 23 H 1.07992 * 119.97904 * 359.97438 * 14 13 10 24 24 H 1.07998 * 119.99774 * 180.26884 * 15 14 13 25 25 H 1.08001 * 119.99832 * 359.97438 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3162 -3.4268 1.6035 15 6 5.0028 -3.5028 2.8006 16 6 4.4075 -4.0892 3.9033 17 17 5.2723 -4.1918 5.4051 18 6 3.1222 -4.5941 3.8084 19 35 2.3070 -5.3951 5.3149 20 6 2.4343 -4.5122 2.6112 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0068 23 1 4.7828 -2.9735 0.7415 24 1 6.0056 -3.1087 2.8739 25 1 1.4313 -4.9057 2.5367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192389352.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:14 Heat of formation + Delta-G solvation = -54.974763 kcal Electronic energy + Delta-G solvation = -16910.910412 eV Core-core repulsion = 13702.593112 eV Total energy + Delta-G solvation = -3208.317299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.18497 -36.61640 -36.19977 -34.81865 -34.80366 -32.42484 -31.15678 -30.93299 -29.21389 -24.70025 -23.14230 -22.58774 -18.65905 -18.33455 -17.57115 -16.69165 -15.97853 -15.86099 -14.70582 -14.49023 -14.38164 -13.91918 -13.65365 -13.51472 -12.62962 -12.11764 -11.76493 -11.74667 -11.43029 -11.25253 -11.16903 -11.06004 -10.98017 -10.95251 -10.69100 -10.51144 -10.28682 -10.16968 -9.98319 -9.04605 -8.78310 -8.44730 -6.66688 -4.05756 0.69683 1.10912 1.38433 1.44650 1.97865 3.09551 3.14272 3.15360 3.30524 3.92788 4.32473 4.59192 4.65808 4.95415 5.04703 5.12891 5.32493 5.58532 5.68687 5.85689 5.97461 6.26672 6.62353 6.84874 7.29304 8.47701 8.59527 9.03473 10.47965 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.004720 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.400172 B = 5931.207162 C = 6365.259128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.033 3.967 3 Si 0.925 3.075 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.268 4.268 8 H 0.107 0.893 9 N -0.937 5.937 10 S 2.593 3.407 11 O -0.998 6.998 12 O -0.967 6.967 13 C -0.649 4.649 14 C 0.004 3.996 15 C -0.130 4.130 16 C 0.019 3.981 17 Cl -0.053 7.053 18 C -0.113 4.113 19 Br -0.036 7.036 20 C 0.013 3.987 21 H 0.278 0.722 22 H 0.412 0.588 23 H 0.153 0.847 24 H 0.144 0.856 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -5.687 9.942 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.177 4.177 3 Si 0.751 3.249 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.411 4.411 8 H 0.124 0.876 9 N -0.688 5.688 10 S 2.682 3.318 11 O -0.987 6.987 12 O -0.956 6.956 13 C -0.727 4.727 14 C -0.016 4.016 15 C -0.150 4.150 16 C -0.010 4.010 17 Cl -0.024 7.024 18 C -0.194 4.194 19 Br 0.050 6.950 20 C -0.007 4.007 21 H 0.088 0.912 22 H 0.248 0.752 23 H 0.170 0.830 24 H 0.162 0.838 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.418 -6.730 10.074 13.710 hybrid contribution 0.446 1.269 0.770 1.550 sum 6.864 -5.461 10.844 13.947 Atomic orbital electron populations 1.69689 1.06143 1.28857 1.45840 1.25340 0.95710 0.99800 0.96820 0.85937 0.79332 0.80705 0.78910 1.19816 1.20526 1.19077 1.19425 0.92397 0.82977 1.46259 0.87551 1.52018 1.17250 1.19398 1.80134 1.07826 0.73246 0.73992 0.76710 1.93419 1.59540 1.57914 1.87827 1.93473 1.61138 1.86896 1.54142 1.32589 1.07692 1.07389 1.25029 1.21087 0.91908 0.91372 0.97203 1.21192 1.01288 1.01014 0.91501 1.20932 0.91823 0.99546 0.88673 1.98379 1.75990 1.96630 1.31399 1.21836 0.95398 1.07196 0.94924 1.96693 1.80729 1.80362 1.37260 1.20847 0.99238 0.91777 0.88880 0.91161 0.75234 0.82965 0.83783 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.53 13.06 55.49 0.72 -20.80 15 2 C 0.03 0.78 5.50 -17.43 -0.10 0.68 15 3 Si 0.93 18.36 29.55 -169.99 -5.02 13.33 15 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 15 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.27 -6.26 9.63 -15.06 -0.15 -6.40 15 8 H 0.11 2.31 7.82 -52.49 -0.41 1.90 15 9 N -0.94 -21.06 5.75 31.50 0.18 -20.88 15 10 S 2.59 53.87 5.70 -107.50 -0.61 53.26 15 11 O -1.00 -22.29 17.28 -57.17 -0.99 -23.28 15 12 O -0.97 -21.89 16.98 -57.17 -0.97 -22.86 15 13 C -0.65 -11.80 5.89 -39.58 -0.23 -12.04 15 14 C 0.00 0.06 9.52 -39.58 -0.38 -0.31 15 15 C -0.13 -1.86 9.83 -39.55 -0.39 -2.24 15 16 C 0.02 0.29 6.32 -39.47 -0.25 0.04 15 17 Cl -0.05 -0.68 27.75 -51.86 -1.44 -2.12 15 18 C -0.11 -1.79 6.23 -39.48 -0.25 -2.03 15 19 Br -0.04 -0.50 32.53 -68.01 -2.21 -2.71 15 20 C 0.01 0.23 9.26 -39.56 -0.37 -0.13 15 21 H 0.28 6.51 8.31 -40.82 -0.34 6.17 15 22 H 0.41 9.43 8.02 -34.47 -0.28 9.15 15 23 H 0.15 2.28 7.61 -52.49 -0.40 1.88 15 24 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 25 H 0.15 2.51 7.62 -52.49 -0.40 2.11 15 LS Contribution 279.54 15.07 4.21 4.21 Total: -1.00 -27.45 279.54 -9.27 -36.73 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.04 Total: 7.56 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.10 Total: -22.44 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.91 Total: -41.68 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.96 Total: -46.13 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -0.61 Total: 53.26 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.44 Total: -2.12 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.21 Total: -2.71 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.45 -9.27 -36.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192389352.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.247 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds