Wall clock time and date at job start Tue Mar 31 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38268 * 119.98413 * 269.72825 * 13 10 9 15 15 C 1.38207 * 120.03012 * 179.72460 * 14 13 10 16 16 C 1.38348 * 119.99568 * 0.55161 * 15 14 13 17 17 Cl 1.73603 * 120.01494 * 179.70642 * 16 15 14 18 18 C 1.38421 * 119.96702 * 359.71617 * 16 15 14 19 19 Br 1.89096 * 120.01580 * 180.02562 * 18 16 15 20 20 C 1.38208 * 119.98075 * 89.99904 * 13 10 9 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 23 23 H 1.07992 * 119.97904 * 359.97438 * 14 13 10 24 24 H 1.07998 * 119.99774 * 180.26884 * 15 14 13 25 25 H 1.08001 * 119.99832 * 359.97438 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3162 -3.4268 1.6035 15 6 5.0028 -3.5028 2.8006 16 6 4.4075 -4.0892 3.9033 17 17 5.2723 -4.1918 5.4051 18 6 3.1222 -4.5941 3.8084 19 35 2.3070 -5.3951 5.3149 20 6 2.4343 -4.5122 2.6112 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0068 23 1 4.7828 -2.9735 0.7415 24 1 6.0056 -3.1087 2.8739 25 1 1.4313 -4.9057 2.5367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192389352.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:14 Heat of formation + Delta-G solvation = -72.916730 kcal Electronic energy + Delta-G solvation = -16911.688434 eV Core-core repulsion = 13702.593112 eV Total energy + Delta-G solvation = -3209.095321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47501 -38.08691 -37.76183 -36.71638 -36.47009 -33.67079 -32.83922 -32.27687 -30.46241 -26.42426 -24.52145 -23.90145 -20.35080 -20.03211 -19.04698 -18.33250 -17.48037 -17.27446 -16.37625 -16.04570 -15.75220 -15.29959 -15.16235 -14.81056 -14.02844 -13.79150 -13.13096 -13.05436 -13.01616 -12.92659 -12.90492 -12.83813 -12.35160 -12.21613 -12.19925 -12.07979 -11.86357 -11.75634 -11.26926 -10.33740 -10.16189 -10.02439 -8.31454 -5.87022 -0.66318 -0.29814 -0.16227 0.22759 0.79000 1.51953 1.54457 1.62225 1.95993 2.32363 2.65741 2.92828 3.22243 3.35661 3.59233 3.83002 3.98833 4.20131 4.43636 4.49845 4.71167 4.87140 5.11317 5.33737 5.61910 6.74388 6.96444 7.32058 8.86462 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.004720 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.400172 B = 5931.207162 C = 6365.259128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.015 4.015 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.309 4.309 8 H 0.116 0.884 9 N -0.968 5.968 10 S 2.665 3.335 11 O -1.007 7.007 12 O -0.984 6.984 13 C -0.665 4.665 14 C 0.001 3.999 15 C -0.119 4.119 16 C 0.024 3.976 17 Cl -0.027 7.027 18 C -0.123 4.123 19 Br -0.015 7.015 20 C 0.005 3.995 21 H 0.272 0.728 22 H 0.407 0.593 23 H 0.165 0.835 24 H 0.183 0.817 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -6.842 11.652 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.217 4.217 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.444 4.444 8 H 0.133 0.867 9 N -0.721 5.721 10 S 2.756 3.244 11 O -0.997 6.997 12 O -0.974 6.974 13 C -0.750 4.750 14 C -0.019 4.019 15 C -0.138 4.138 16 C -0.006 4.006 17 Cl 0.002 6.998 18 C -0.204 4.204 19 Br 0.070 6.930 20 C -0.016 4.016 21 H 0.082 0.918 22 H 0.242 0.758 23 H 0.183 0.817 24 H 0.200 0.800 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.915 -7.760 11.734 16.655 hybrid contribution -0.099 1.124 0.446 1.213 sum 8.816 -6.636 12.180 16.435 Atomic orbital electron populations 1.69789 1.07325 1.28745 1.50793 1.25994 0.96320 1.02343 0.97089 0.85124 0.78656 0.77389 0.78536 1.20148 1.21092 1.17533 1.19570 0.92708 0.83338 1.48822 0.86686 1.51415 1.16824 1.19196 1.84657 1.03465 0.72742 0.72401 0.75813 1.93444 1.60468 1.57583 1.88222 1.93480 1.61826 1.86985 1.55136 1.31666 1.09095 1.11355 1.22921 1.21334 0.91088 0.90657 0.98786 1.21538 1.02533 0.99642 0.90111 1.21182 0.91545 0.97989 0.89865 1.98398 1.75233 1.96354 1.29814 1.21951 0.95952 1.07314 0.95146 1.96720 1.80599 1.79962 1.35723 1.20907 0.99524 0.91861 0.89345 0.91835 0.75770 0.81717 0.80008 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.76 13.06 21.65 0.28 -48.47 15 2 C -0.02 -0.74 5.50 84.86 0.47 -0.28 15 3 Si 0.98 38.65 29.55 68.60 2.03 40.68 15 4 H -0.28 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.29 -11.29 7.11 99.48 0.71 -10.59 15 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 15 7 C -0.31 -14.79 9.63 84.04 0.81 -13.98 15 8 H 0.12 5.02 7.82 -2.91 -0.02 5.00 15 9 N -0.97 -44.51 5.75 -54.26 -0.31 -44.83 15 10 S 2.67 108.71 5.70 -56.49 -0.32 108.39 15 11 O -1.01 -44.06 17.28 -128.00 -2.21 -46.27 15 12 O -0.98 -43.39 16.98 -128.00 -2.17 -45.56 15 13 C -0.67 -22.93 5.89 22.27 0.13 -22.80 15 14 C 0.00 0.03 9.52 22.27 0.21 0.24 15 15 C -0.12 -2.89 9.83 22.29 0.22 -2.67 15 16 C 0.02 0.61 6.32 22.34 0.14 0.75 15 17 Cl -0.03 -0.60 27.75 -2.72 -0.08 -0.67 15 18 C -0.12 -3.54 6.23 22.33 0.14 -3.41 15 19 Br -0.02 -0.39 32.53 -20.37 -0.66 -1.05 15 20 C 0.00 0.15 9.26 22.28 0.21 0.36 15 21 H 0.27 13.65 8.31 -92.70 -0.77 12.88 15 22 H 0.41 19.53 8.02 -96.74 -0.78 18.75 15 23 H 0.17 4.43 7.61 -2.91 -0.02 4.41 15 24 H 0.18 3.06 8.06 -2.91 -0.02 3.04 15 25 H 0.15 4.86 7.62 -2.91 -0.02 4.83 15 Total: -1.00 -59.11 279.54 -0.64 -59.74 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.48 Total: 19.82 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 2.33 Total: -41.77 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -0.03 Total: -93.30 kcal Atomic # 8 Polarization: -87.45 SS G_CDS: -4.38 Total: -91.83 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: 108.71 SS G_CDS: -0.32 Total: 108.39 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.66 Total: -1.05 kcal Total: -59.11 -0.64 -59.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192389352.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.172 kcal (2) G-P(sol) polarization free energy of solvation -59.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds