Wall clock time and date at job start Tue Mar 31 2020 22:45:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30828 * 1
3 3 Si 1.86797 * 119.99750 * 2 1
4 4 H 1.48497 * 109.47389 * 274.66358 * 3 2 1
5 5 H 1.48504 * 109.47380 * 34.66540 * 3 2 1
6 6 H 1.48503 * 109.47148 * 154.66130 * 3 2 1
7 7 C 1.39942 * 120.00153 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99906 * 162.22833 * 7 2 1
9 9 C 1.41399 * 119.99857 * 342.23392 * 7 2 1
10 10 C 1.40719 * 120.24181 * 155.28388 * 9 7 2
11 11 C 1.37614 * 119.74235 * 180.02562 * 10 9 7
12 12 C 1.38635 * 120.25051 * 0.27218 * 11 10 9
13 13 S 1.76198 * 119.75340 * 179.70113 * 12 11 10
14 14 O 1.42096 * 106.40782 * 203.54588 * 13 12 11
15 15 O 1.42106 * 106.39862 * 336.46390 * 13 12 11
16 16 N 1.65599 * 107.21973 * 90.00292 * 13 12 11
17 17 C 1.39062 * 120.00010 * 64.99852 * 16 13 12
18 18 C 1.39281 * 120.08328 * 179.72413 * 17 16 13
19 19 N 1.31958 * 119.91539 * 179.73693 * 18 17 16
20 20 C 1.32345 * 120.06745 * 0.56538 * 19 18 17
21 21 Cl 1.73595 * 119.91884 * 179.70775 * 20 19 18
22 22 C 1.38319 * 120.15976 * 359.68931 * 20 19 18
23 23 N 1.32226 * 120.08473 * 0.02562 * 22 20 19
24 24 C 1.38640 * 120.49863 * 359.45167 * 12 11 10
25 25 C 1.37618 * 120.24708 * 0.54572 * 24 12 11
26 26 H 0.97000 * 119.99938 * 359.97438 * 1 2 3
27 27 H 1.07991 * 120.12765 * 359.97438 * 10 9 7
28 28 H 1.08000 * 119.87950 * 179.97438 * 11 10 9
29 29 H 0.97007 * 119.99782 * 245.00376 * 16 13 12
30 30 H 1.08000 * 120.03895 * 0.02562 * 18 17 16
31 31 H 1.07998 * 119.95750 * 179.97438 * 22 20 19
32 32 H 1.08001 * 119.87250 * 180.25455 * 24 12 11
33 33 H 1.07999 * 120.12371 * 179.70399 * 25 24 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 2.3911 2.1034 -1.3954
5 1 1.4924 2.6222 0.7963
6 1 3.5856 1.4138 0.5992
7 6 2.0080 -1.2119 0.0005
8 1 3.0494 -1.2343 -0.2849
9 6 1.3516 -2.4071 0.3747
10 6 1.8218 -3.6493 -0.0900
11 6 1.1748 -4.8061 0.2802
12 6 0.0604 -4.7503 1.1030
13 16 -0.7626 -6.2390 1.5624
14 8 -2.0945 -5.8743 1.8974
15 8 -0.4476 -7.1970 0.5613
16 7 -0.0590 -6.7764 2.9619
17 6 -0.1667 -6.0254 4.1273
18 6 0.4196 -6.4786 5.3066
19 7 0.3197 -5.7607 6.4093
20 6 -0.3461 -4.6170 6.3979
21 17 -0.4814 -3.6794 7.8527
22 6 -0.9339 -4.1667 5.2297
23 7 -0.8330 -4.8783 4.1198
24 6 -0.4082 -3.5325 1.5714
25 6 0.2231 -2.3630 1.2141
26 1 -0.4850 0.8400 0.0004
27 1 2.6866 -3.6946 -0.7352
28 1 1.5336 -5.7606 -0.0755
29 1 0.4284 -7.6151 2.9686
30 1 0.9592 -7.4140 5.3174
31 1 -1.4768 -3.2331 5.2242
32 1 -1.2748 -3.5011 2.2152
33 1 -0.1465 -1.4150 1.5762
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000236057696.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:49
Heat of formation + Delta-G solvation = -32.181248 kcal
Electronic energy + Delta-G solvation = -24182.504639 eV
Core-core repulsion = 20360.162122 eV
Total energy + Delta-G solvation = -3822.342517 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 339.023 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.32871 -39.35392 -38.30000 -37.95167 -36.92259 -36.79465 -35.80018 -35.15455
-32.04702 -31.25846 -30.95549 -27.62820 -26.22496 -25.07204 -23.28645 -22.93451
-20.92183 -19.78375 -19.40341 -19.21242 -18.35894 -18.20281 -17.70952 -17.21898
-16.53720 -16.33413 -15.84459 -15.71290 -15.19037 -14.95498 -14.64551 -14.15101
-14.03347 -13.95816 -13.52960 -13.49632 -13.18395 -13.08656 -12.96355 -12.87099
-12.78603 -12.55858 -12.44987 -12.38903 -12.20065 -12.01053 -11.50842 -11.25949
-11.17960 -10.40538 -9.77210 -9.64365 -9.49622 -8.86558 -6.64746 -0.60891
-0.43095 -0.12665 0.50094 0.63434 1.10958 1.35498 1.41344 1.52243
1.81224 2.11472 2.38280 2.48476 2.72602 2.94971 3.10341 3.25983
3.51878 3.56665 3.79460 4.15237 4.34359 4.37872 4.46922 4.91793
4.96306 5.04081 5.13542 5.26012 5.48381 5.57895 5.61710 5.81897
5.95481 6.05142 6.17291 6.46438 6.52240 6.69750 6.83414 8.08516
Molecular weight = 339.02amu
Principal moments of inertia in cm(-1)
A = 0.009854 B = 0.004508 C = 0.003355
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2840.664388 B = 6209.746941 C = 8343.218372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.796 5.796
2 C 0.036 3.964
3 Si 0.989 3.011
4 H -0.259 1.259
5 H -0.262 1.262
6 H -0.255 1.255
7 C -0.467 4.467
8 H 0.091 0.909
9 C 0.113 3.887
10 C -0.259 4.259
11 C -0.004 4.004
12 C -0.793 4.793
13 S 2.717 3.283
14 O -0.975 6.975
15 O -0.984 6.984
16 N -1.014 6.014
17 C 0.335 3.665
18 C 0.062 3.938
19 N -0.415 5.415
20 C 0.075 3.925
21 Cl -0.005 7.005
22 C 0.121 3.879
23 N -0.487 5.487
24 C 0.006 3.994
25 C -0.215 4.215
26 H 0.298 0.702
27 H 0.110 0.890
28 H 0.129 0.871
29 H 0.452 0.548
30 H 0.225 0.775
31 H 0.200 0.800
32 H 0.123 0.877
33 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.516 -6.710 11.463 13.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.419 5.419
2 C -0.184 4.184
3 Si 0.809 3.191
4 H -0.184 1.184
5 H -0.187 1.187
6 H -0.178 1.178
7 C -0.493 4.493
8 H 0.109 0.891
9 C 0.109 3.891
10 C -0.279 4.279
11 C -0.024 4.024
12 C -0.888 4.888
13 S 2.814 3.186
14 O -0.965 6.965
15 O -0.974 6.974
16 N -0.763 5.763
17 C 0.097 3.903
18 C -0.106 4.106
19 N -0.131 5.131
20 C -0.092 4.092
21 Cl 0.023 6.977
22 C -0.040 4.040
23 N -0.208 5.208
24 C -0.014 4.014
25 C -0.235 4.235
26 H 0.109 0.891
27 H 0.128 0.872
28 H 0.147 0.853
29 H 0.294 0.706
30 H 0.241 0.759
31 H 0.217 0.783
32 H 0.140 0.860
33 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 0.468 -6.839 11.068 13.019
hybrid contribution 0.815 1.097 -0.153 1.375
sum 1.283 -5.742 10.915 12.400
Atomic orbital electron populations
1.69866 1.09397 1.31839 1.30793 1.26995 0.95523 1.05151 0.90732
0.85073 0.79250 0.75066 0.79760 1.18384 1.18654 1.17808 1.20232
0.98904 0.92213 1.37998 0.89126 1.18225 0.90685 0.93230 0.86913
1.21243 1.05226 0.92951 1.08486 1.20497 0.91703 0.98091 0.92112
1.29341 1.18264 1.16207 1.24949 1.00786 0.73179 0.73107 0.71511
1.93499 1.35370 1.84341 1.83307 1.93519 1.85572 1.61954 1.56391
1.53474 1.68525 1.32544 1.21731 1.19263 0.92790 0.89723 0.88513
1.23835 0.99932 1.02032 0.84797 1.67784 1.12248 1.04128 1.28918
1.22600 1.01555 0.94424 0.90588 1.98410 1.96322 1.68591 1.34334
1.23604 0.95601 0.99748 0.85015 1.68113 1.16931 1.05711 1.30078
1.20516 0.95868 0.91252 0.93806 1.21335 1.01084 0.97206 1.03881
0.89051 0.87156 0.85331 0.70648 0.75900 0.78345 0.85967 0.87371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -38.63 10.97 21.83 0.24 -38.39 16
2 C 0.04 1.64 5.14 85.26 0.44 2.08 16
3 Si 0.99 34.39 29.59 68.60 2.03 36.42 16
4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16
5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16
6 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16
7 C -0.47 -23.20 9.05 23.46 0.21 -22.99 16
8 H 0.09 4.25 7.91 -2.91 -0.02 4.22 16
9 C 0.11 5.81 5.57 -21.29 -0.12 5.69 16
10 C -0.26 -12.17 9.80 22.73 0.22 -11.95 16
11 C 0.00 -0.18 9.49 22.22 0.21 0.03 16
12 C -0.79 -33.75 5.81 22.46 0.13 -33.62 16
13 S 2.72 96.36 5.39 -56.49 -0.30 96.05 16
14 O -0.98 -39.95 16.16 -128.00 -2.07 -42.01 16
15 O -0.98 -36.93 17.26 -128.00 -2.21 -39.14 16
16 N -1.01 -25.04 5.85 -55.16 -0.32 -25.36 16
17 C 0.33 8.78 7.33 133.00 0.98 9.76 16
18 C 0.06 1.25 11.08 84.92 0.94 2.19 16
19 N -0.41 -9.75 10.47 -185.58 -1.94 -11.69 16
20 C 0.07 1.81 7.28 84.63 0.62 2.42 16
21 Cl 0.00 -0.10 29.12 -2.72 -0.08 -0.18 16
22 C 0.12 3.18 11.00 84.65 0.93 4.11 16
23 N -0.49 -15.20 6.44 -192.53 -1.24 -16.44 16
24 C 0.01 0.26 8.38 22.22 0.19 0.45 16
25 C -0.21 -10.91 8.70 22.73 0.20 -10.71 16
26 H 0.30 12.86 8.30 -92.71 -0.77 12.09 16
27 H 0.11 4.77 8.06 -2.92 -0.02 4.75 16
28 H 0.13 4.74 7.60 -2.91 -0.02 4.72 16
29 H 0.45 6.80 8.83 -96.74 -0.85 5.95 16
30 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16
31 H 0.20 4.32 8.06 -2.91 -0.02 4.30 16
32 H 0.12 5.38 6.51 -2.91 -0.02 5.36 16
33 H 0.11 5.65 6.18 -2.91 -0.02 5.63 16
Total: -1.00 -67.35 320.69 -0.61 -67.96
By element:
Atomic # 1 Polarization: 24.98 SS G_CDS: 0.34 Total: 25.32 kcal
Atomic # 6 Polarization: -57.47 SS G_CDS: 4.94 Total: -52.53 kcal
Atomic # 7 Polarization: -88.62 SS G_CDS: -3.27 Total: -91.88 kcal
Atomic # 8 Polarization: -76.88 SS G_CDS: -4.28 Total: -81.16 kcal
Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal
Atomic # 16 Polarization: 96.36 SS G_CDS: -0.30 Total: 96.05 kcal
Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal
Total: -67.35 -0.61 -67.96 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000236057696.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.778 kcal
(2) G-P(sol) polarization free energy of solvation -67.350 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.572 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds