Wall clock time and date at job start Tue Mar 31 2020 22:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48507 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46991 * 299.99290 * 3 2 1 6 6 H 1.48497 * 109.47276 * 59.99889 * 3 2 1 7 7 C 1.37878 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99740 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46968 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99572 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99806 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.85596 * 62.27157 * 14 12 11 16 16 C 1.54705 * 110.93661 * 298.54884 * 14 12 11 17 17 O 1.43772 * 102.94934 * 267.03644 * 16 14 12 18 18 C 1.36407 * 109.09664 * 332.50450 * 17 16 14 19 19 C 1.39283 * 129.79215 * 198.28510 * 18 17 16 20 20 C 1.37918 * 120.25503 * 180.81583 * 19 18 17 21 21 C 1.38362 * 120.34162 * 0.02562 * 20 19 18 22 22 Br 1.89111 * 120.12754 * 179.85449 * 21 20 19 23 23 C 1.38424 * 119.74655 * 359.83144 * 21 20 19 24 24 C 1.37738 * 119.96856 * 0.02562 * 23 21 20 25 25 H 0.97005 * 119.99565 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46915 * 60.00131 * 9 7 2 27 27 H 1.08998 * 109.47294 * 300.00341 * 9 7 2 28 28 H 1.08997 * 109.47070 * 60.00380 * 10 9 7 29 29 H 1.08998 * 109.47517 * 300.00357 * 10 9 7 30 30 H 0.96996 * 120.00026 * 0.02562 * 11 10 9 31 31 H 1.09002 * 110.75192 * 25.45160 * 16 14 12 32 32 H 1.08999 * 110.75127 * 148.62070 * 16 14 12 33 33 H 1.08007 * 119.86974 * 0.81796 * 19 18 17 34 34 H 1.08001 * 119.82673 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.01560 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9308 -0.0001 12 6 2.1864 -6.0980 0.0003 13 8 3.3992 -6.0981 0.0017 14 6 1.4329 -7.4032 -0.0009 15 1 0.8294 -7.5020 -0.9032 16 6 0.5570 -7.5370 1.2673 17 8 1.4153 -8.2444 2.1784 18 6 2.2900 -9.0098 1.4644 19 6 3.0601 -10.0970 1.8702 20 6 3.9025 -10.7243 0.9763 21 6 3.9909 -10.2794 -0.3309 22 35 5.1510 -11.1414 -1.5504 23 6 3.2265 -9.2013 -0.7426 24 6 2.3827 -8.5759 0.1484 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6239 -2.5566 0.8902 28 1 2.8717 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.5426 -4.9308 -0.0008 31 1 0.2988 -6.5550 1.6637 32 1 -0.3424 -8.1153 1.0562 33 1 2.9972 -10.4503 2.8889 34 1 4.4962 -11.5670 1.2983 35 1 3.2918 -8.8507 -1.7621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273013806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:25 Heat of formation + Delta-G solvation = -46.524305 kcal Electronic energy + Delta-G solvation = -20420.035589 eV Core-core repulsion = 17043.430896 eV Total energy + Delta-G solvation = -3376.604692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68124 -38.96367 -37.77559 -34.99083 -33.23250 -32.79765 -32.01914 -30.32776 -29.17159 -28.86929 -25.19544 -24.08859 -22.80482 -22.09216 -21.02867 -20.14751 -17.90423 -17.21070 -16.82851 -16.53582 -16.01493 -15.63769 -15.09326 -14.80319 -14.50093 -14.30438 -13.95801 -13.44629 -13.34555 -13.25268 -12.95912 -12.36147 -12.11471 -11.89904 -11.82360 -11.28766 -11.25701 -11.08750 -10.67072 -10.56162 -10.48371 -10.41121 -9.89681 -9.60292 -9.33609 -9.15707 -8.64857 -8.43586 -8.34070 -6.14407 -4.17264 0.83455 0.99085 1.42346 2.69364 3.01225 3.16342 3.25520 3.33381 3.38400 3.62487 3.93610 4.25225 4.37971 4.49901 4.73153 4.80266 4.88811 5.09552 5.14051 5.23077 5.25641 5.32504 5.60241 5.69627 5.90795 6.04479 6.13846 6.24561 6.26617 6.65134 6.77095 6.78597 7.44416 7.54179 7.82741 7.85576 8.21304 8.48119 8.88796 9.48086 10.97194 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002370 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.645363 B =11813.854139 C =12731.717901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.719 5.719 12 C 0.514 3.486 13 O -0.532 6.532 14 C -0.104 4.104 15 H 0.127 0.873 16 C 0.060 3.940 17 O -0.294 6.294 18 C 0.130 3.870 19 C -0.136 4.136 20 C -0.053 4.053 21 C -0.123 4.123 22 Br -0.050 7.050 23 C -0.020 4.020 24 C -0.140 4.140 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.397 0.603 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -26.036 -0.615 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.370 5.370 12 C 0.298 3.702 13 O -0.408 6.408 14 C -0.125 4.125 15 H 0.145 0.855 16 C -0.015 4.015 17 O -0.208 6.208 18 C 0.084 3.916 19 C -0.155 4.155 20 C -0.072 4.072 21 C -0.202 4.202 22 Br 0.035 6.965 23 C -0.040 4.040 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.725 -26.165 -0.830 26.442 hybrid contribution -0.423 1.347 0.050 1.413 sum 3.302 -24.818 -0.780 25.049 Atomic orbital electron populations 1.69960 1.06094 1.26832 1.50401 1.24994 0.94904 0.99454 0.94916 0.86455 0.80194 0.83274 0.77654 1.19556 1.20897 1.20895 1.21079 0.93304 0.90335 1.51343 0.92184 1.19330 0.94169 0.91097 0.97869 1.21773 0.96094 0.81188 1.00966 1.46312 1.10478 1.06423 1.73756 1.19983 0.88154 0.84653 0.77436 1.90717 1.13601 1.87336 1.49185 1.21648 0.96523 0.92420 1.01948 0.85541 1.23926 0.92299 0.98689 0.86576 1.86960 1.45194 1.56344 1.32270 1.19723 0.91153 0.90908 0.89830 1.20185 0.99249 0.94983 1.01129 1.20792 0.96651 0.98955 0.90832 1.21465 1.02524 1.01312 0.94901 1.96695 1.62260 1.78280 1.59227 1.20152 0.91947 0.92123 0.99776 1.20102 1.02010 0.97365 0.94769 0.92857 0.95898 0.95889 0.92423 0.92419 0.76897 0.86586 0.88888 0.84382 0.84142 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 11 N -0.72 -11.67 5.29 -60.29 -0.32 -11.98 16 12 C 0.51 8.31 7.15 -10.98 -0.08 8.23 16 13 O -0.53 -10.91 16.15 5.56 0.09 -10.82 16 14 C -0.10 -1.21 3.53 -91.56 -0.32 -1.53 16 15 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.06 0.60 7.52 38.05 0.29 0.88 16 17 O -0.29 -3.76 11.13 -21.05 -0.23 -3.99 16 18 C 0.13 1.64 7.04 -38.96 -0.27 1.37 16 19 C -0.14 -1.44 10.06 -39.31 -0.40 -1.84 16 20 C -0.05 -0.52 9.76 -39.65 -0.39 -0.91 16 21 C -0.12 -1.37 6.23 -39.47 -0.25 -1.62 16 22 Br -0.05 -0.50 33.71 -68.01 -2.29 -2.79 16 23 C -0.02 -0.25 9.78 -39.70 -0.39 -0.63 16 24 C -0.14 -1.79 4.93 -104.10 -0.51 -2.30 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 5.27 8.30 -40.82 -0.34 4.94 16 31 H 0.12 1.09 7.53 -51.93 -0.39 0.69 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -32.57 326.59 -9.09 -41.66 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.08 Total: 0.54 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.90 Total: -8.72 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.42 Total: -36.92 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.14 Total: -14.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.57 -9.09 -41.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273013806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.869 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds