Wall clock time and date at job start Tue Mar 31 2020 22:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48507 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46991 * 299.99290 * 3 2 1 6 6 H 1.48497 * 109.47276 * 59.99889 * 3 2 1 7 7 C 1.37878 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99740 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46968 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99572 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99806 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.85596 * 62.27157 * 14 12 11 16 16 C 1.54705 * 110.93661 * 298.54884 * 14 12 11 17 17 O 1.43772 * 102.94934 * 267.03644 * 16 14 12 18 18 C 1.36407 * 109.09664 * 332.50450 * 17 16 14 19 19 C 1.39283 * 129.79215 * 198.28510 * 18 17 16 20 20 C 1.37918 * 120.25503 * 180.81583 * 19 18 17 21 21 C 1.38362 * 120.34162 * 0.02562 * 20 19 18 22 22 Br 1.89111 * 120.12754 * 179.85449 * 21 20 19 23 23 C 1.38424 * 119.74655 * 359.83144 * 21 20 19 24 24 C 1.37738 * 119.96856 * 0.02562 * 23 21 20 25 25 H 0.97005 * 119.99565 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46915 * 60.00131 * 9 7 2 27 27 H 1.08998 * 109.47294 * 300.00341 * 9 7 2 28 28 H 1.08997 * 109.47070 * 60.00380 * 10 9 7 29 29 H 1.08998 * 109.47517 * 300.00357 * 10 9 7 30 30 H 0.96996 * 120.00026 * 0.02562 * 11 10 9 31 31 H 1.09002 * 110.75192 * 25.45160 * 16 14 12 32 32 H 1.08999 * 110.75127 * 148.62070 * 16 14 12 33 33 H 1.08007 * 119.86974 * 0.81796 * 19 18 17 34 34 H 1.08001 * 119.82673 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.01560 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9308 -0.0001 12 6 2.1864 -6.0980 0.0003 13 8 3.3992 -6.0981 0.0017 14 6 1.4329 -7.4032 -0.0009 15 1 0.8294 -7.5020 -0.9032 16 6 0.5570 -7.5370 1.2673 17 8 1.4153 -8.2444 2.1784 18 6 2.2900 -9.0098 1.4644 19 6 3.0601 -10.0970 1.8702 20 6 3.9025 -10.7243 0.9763 21 6 3.9909 -10.2794 -0.3309 22 35 5.1510 -11.1414 -1.5504 23 6 3.2265 -9.2013 -0.7426 24 6 2.3827 -8.5759 0.1484 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6239 -2.5566 0.8902 28 1 2.8717 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.5426 -4.9308 -0.0008 31 1 0.2988 -6.5550 1.6637 32 1 -0.3424 -8.1153 1.0562 33 1 2.9972 -10.4503 2.8889 34 1 4.4962 -11.5670 1.2983 35 1 3.2918 -8.8507 -1.7621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273013806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:24 Heat of formation + Delta-G solvation = -67.400118 kcal Electronic energy + Delta-G solvation = -20420.940832 eV Core-core repulsion = 17043.430896 eV Total energy + Delta-G solvation = -3377.509935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59787 -40.27183 -38.62125 -36.65312 -34.89010 -34.03959 -32.84125 -31.77586 -30.40897 -29.71348 -26.93578 -25.14244 -23.86350 -23.09439 -22.65480 -21.39011 -18.99277 -18.51051 -18.07120 -17.75046 -17.19944 -16.67942 -16.45589 -16.35078 -16.15685 -15.22371 -14.96301 -14.69517 -14.61160 -14.38426 -14.20418 -13.89608 -13.23818 -13.02747 -12.95735 -12.75801 -12.65451 -12.53713 -12.25467 -12.11419 -11.70220 -11.51742 -11.37034 -11.28378 -10.89769 -10.62086 -10.09913 -10.07577 -9.20468 -8.25773 -6.35642 -0.02164 0.13680 0.59728 1.39741 1.41396 1.48115 1.53836 2.07520 2.16020 2.40007 2.57410 3.03732 3.09369 3.40800 3.67274 3.76348 4.00607 4.12325 4.25898 4.34443 4.45575 4.47273 4.48271 4.57018 4.80229 4.83154 4.86047 5.09274 5.18749 5.23278 5.33791 5.46293 5.57229 5.77181 5.94507 6.14973 6.54049 6.77504 7.18503 7.33796 8.86045 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002370 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.645363 B =11813.854139 C =12731.717901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.141 3.859 11 N -0.711 5.711 12 C 0.513 3.487 13 O -0.579 6.579 14 C -0.095 4.095 15 H 0.161 0.839 16 C 0.060 3.940 17 O -0.313 6.313 18 C 0.112 3.888 19 C -0.138 4.138 20 C -0.048 4.048 21 C -0.132 4.132 22 Br -0.042 7.042 23 C -0.034 4.034 24 C -0.160 4.160 25 H 0.266 0.734 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.414 0.586 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 -26.996 -0.411 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.363 5.363 12 C 0.300 3.700 13 O -0.459 6.459 14 C -0.116 4.116 15 H 0.179 0.821 16 C -0.015 4.015 17 O -0.227 6.227 18 C 0.066 3.934 19 C -0.157 4.157 20 C -0.067 4.067 21 C -0.212 4.212 22 Br 0.044 6.956 23 C -0.054 4.054 24 C -0.162 4.162 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.250 0.750 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.451 -27.144 -0.629 27.370 hybrid contribution -0.326 1.587 -0.018 1.620 sum 3.125 -25.557 -0.647 25.756 Atomic orbital electron populations 1.70047 1.07404 1.27945 1.51006 1.25821 0.95791 1.02936 0.94429 0.85438 0.78940 0.78986 0.77947 1.19175 1.20156 1.20206 1.21490 0.93507 0.92073 1.51512 0.92596 1.19129 0.94154 0.91461 0.96620 1.21226 0.95103 0.82235 0.99681 1.46071 1.11192 1.05253 1.73752 1.20790 0.87820 0.85795 0.75606 1.90692 1.15923 1.88115 1.51139 1.21670 0.96439 0.88928 1.04551 0.82126 1.24193 0.92739 0.99497 0.85032 1.86922 1.45749 1.56694 1.33334 1.20021 0.91769 0.91686 0.89877 1.20540 0.98510 0.94352 1.02300 1.21131 0.96206 0.99245 0.90134 1.21664 1.02543 1.01255 0.95725 1.96695 1.61895 1.77939 1.59117 1.20288 0.92418 0.92760 0.99949 1.20268 1.02808 0.97938 0.95189 0.92499 0.96959 0.97001 0.93889 0.93611 0.74973 0.86361 0.84932 0.82215 0.81512 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 13.29 21.45 0.28 -52.88 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 5.91 5.61 86.38 0.48 6.40 16 11 N -0.71 -22.84 5.29 -463.05 -2.45 -25.29 16 12 C 0.51 16.40 7.15 87.66 0.63 17.02 16 13 O -0.58 -24.09 16.15 -3.03 -0.05 -24.14 16 14 C -0.09 -2.05 3.53 -11.40 -0.04 -2.09 16 15 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 16 C 0.06 1.05 7.52 72.56 0.55 1.60 16 17 O -0.31 -7.55 11.13 -98.23 -1.09 -8.64 16 18 C 0.11 2.69 7.04 22.67 0.16 2.85 16 19 C -0.14 -2.68 10.06 22.45 0.23 -2.45 16 20 C -0.05 -0.86 9.76 22.22 0.22 -0.64 16 21 C -0.13 -2.81 6.23 22.34 0.14 -2.67 16 22 Br -0.04 -0.79 33.71 -20.37 -0.69 -1.47 16 23 C -0.03 -0.82 9.78 22.20 0.22 -0.60 16 24 C -0.16 -3.92 4.93 -19.53 -0.10 -4.01 16 25 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.41 10.57 8.30 -92.71 -0.77 9.80 16 31 H 0.12 1.99 7.53 -2.39 -0.02 1.97 16 32 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -70.59 326.59 1.72 -68.88 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.35 Total: 10.55 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 3.33 Total: -12.28 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.16 Total: -78.17 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.14 Total: -32.78 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.47 kcal Total: -70.59 1.72 -68.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273013806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.476 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds