Wall clock time and date at job start Tue Mar 31 2020 22:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.83429 * 297.73618 * 14 12 11 16 16 C 1.54705 * 110.94227 * 61.45353 * 14 12 11 17 17 O 1.43769 * 102.79624 * 92.78565 * 16 14 12 18 18 C 1.36153 * 109.28180 * 27.55272 * 17 16 14 19 19 C 1.39285 * 129.86894 * 161.43386 * 18 17 16 20 20 C 1.37927 * 120.26035 * 179.54994 * 19 18 17 21 21 C 1.38363 * 120.33800 * 0.07579 * 20 19 18 22 22 Br 1.89102 * 120.12682 * 180.11740 * 21 20 19 23 23 C 1.38425 * 119.74736 * 0.13992 * 21 20 19 24 24 C 1.37739 * 119.96797 * 359.97438 * 23 21 20 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.09004 * 110.74665 * 211.10768 * 16 14 12 32 32 H 1.08999 * 110.75273 * 334.46116 * 16 14 12 33 33 H 1.08006 * 119.86956 * 359.60893 * 19 18 17 34 34 H 1.07998 * 119.83206 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.01873 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.3996 -6.0979 0.0014 14 6 1.4333 -7.4031 0.0018 15 1 0.8285 -7.5015 0.9033 16 6 0.5594 -7.5371 -1.2677 17 8 1.4234 -8.2409 -2.1761 18 6 2.2976 -9.0046 -1.4646 19 6 3.0684 -10.0916 -1.8699 20 6 3.9060 -10.7224 -0.9738 21 6 3.9872 -10.2826 0.3355 22 35 5.1401 -11.1498 1.5582 23 6 3.2210 -9.2058 0.7472 24 6 2.3825 -8.5765 -0.1462 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 0.5429 -4.9308 0.0011 31 1 -0.3380 -8.1196 -1.0590 32 1 0.3004 -6.5552 -1.6637 33 1 3.0107 -10.4414 -2.8901 34 1 4.5009 -11.5644 -1.2956 35 1 3.2813 -8.8586 1.7680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273013809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:27 Heat of formation + Delta-G solvation = -46.285291 kcal Electronic energy + Delta-G solvation = -20421.306595 eV Core-core repulsion = 17044.712268 eV Total energy + Delta-G solvation = -3376.594328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70231 -38.96579 -37.78173 -34.99090 -33.23583 -32.79787 -32.01741 -30.32800 -29.17141 -28.87209 -25.19820 -24.09155 -22.80379 -22.09265 -21.02881 -20.14931 -17.91128 -17.21495 -16.83413 -16.53693 -16.01442 -15.64319 -15.09369 -14.80581 -14.50130 -14.30429 -13.95224 -13.44605 -13.34585 -13.25228 -12.95969 -12.36147 -12.11400 -11.90114 -11.82770 -11.28336 -11.25660 -11.08742 -10.67093 -10.56044 -10.48241 -10.41132 -9.89729 -9.60337 -9.33601 -9.15601 -8.64865 -8.43603 -8.33443 -6.14384 -4.17276 0.83694 0.99212 1.42585 2.69109 3.00530 3.16581 3.25501 3.33373 3.38417 3.62693 3.93815 4.25240 4.37962 4.49971 4.73135 4.80413 4.88897 5.09449 5.13990 5.23076 5.25640 5.32507 5.60375 5.69882 5.90983 6.04579 6.14201 6.24541 6.26599 6.65110 6.77180 6.79553 7.44392 7.54163 7.82716 7.85544 8.21289 8.48119 8.88776 9.48084 10.97222 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002368 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.205787 B =11822.742914 C =12734.582076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.720 5.720 12 C 0.514 3.486 13 O -0.532 6.532 14 C -0.104 4.104 15 H 0.127 0.873 16 C 0.061 3.939 17 O -0.295 6.295 18 C 0.131 3.869 19 C -0.137 4.137 20 C -0.052 4.052 21 C -0.123 4.123 22 Br -0.050 7.050 23 C -0.020 4.020 24 C -0.142 4.142 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.397 0.603 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -26.037 0.599 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.370 5.370 12 C 0.298 3.702 13 O -0.408 6.408 14 C -0.126 4.126 15 H 0.144 0.856 16 C -0.014 4.014 17 O -0.208 6.208 18 C 0.085 3.915 19 C -0.156 4.156 20 C -0.072 4.072 21 C -0.203 4.203 22 Br 0.035 6.965 23 C -0.040 4.040 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.700 -26.167 0.818 26.440 hybrid contribution -0.418 1.349 -0.048 1.413 sum 3.282 -24.818 0.770 25.046 Atomic orbital electron populations 1.69955 1.06094 1.26842 1.50401 1.24992 0.94900 0.99451 0.94915 0.86456 0.80195 0.83278 0.77655 1.19556 1.20890 1.20901 1.21080 0.93303 0.90335 1.51345 0.92185 1.19330 0.94168 0.91099 0.97869 1.21773 0.96095 0.81186 1.00965 1.46312 1.10476 1.06421 1.73763 1.19983 0.88153 0.84654 0.77438 1.90716 1.13605 1.87337 1.49177 1.21648 0.96547 0.92415 1.01955 0.85551 1.23946 0.92204 0.98721 0.86552 1.86879 1.44875 1.56531 1.32495 1.19670 0.91148 0.90839 0.89822 1.20184 0.99389 0.94918 1.01123 1.20793 0.96646 0.98940 0.90808 1.21461 1.02621 1.01342 0.94830 1.96693 1.62712 1.78039 1.59029 1.20151 0.91939 0.92109 0.99780 1.20116 1.02125 0.97416 0.94719 0.92853 0.95900 0.95887 0.92423 0.92420 0.76898 0.88857 0.86551 0.84387 0.84145 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 11 N -0.72 -11.67 5.29 -60.29 -0.32 -11.98 16 12 C 0.51 8.31 7.16 -10.98 -0.08 8.23 16 13 O -0.53 -10.92 16.15 5.56 0.09 -10.83 16 14 C -0.10 -1.21 3.52 -91.56 -0.32 -1.53 16 15 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.06 0.60 7.53 38.05 0.29 0.89 16 17 O -0.29 -3.76 11.10 -20.23 -0.22 -3.98 16 18 C 0.13 1.66 7.04 -38.95 -0.27 1.39 16 19 C -0.14 -1.45 10.06 -39.31 -0.40 -1.84 16 20 C -0.05 -0.52 9.76 -39.65 -0.39 -0.90 16 21 C -0.12 -1.38 6.23 -39.47 -0.25 -1.62 16 22 Br -0.05 -0.50 33.71 -68.01 -2.29 -2.79 16 23 C -0.02 -0.24 9.78 -39.69 -0.39 -0.63 16 24 C -0.14 -1.81 4.93 -104.10 -0.51 -2.32 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 5.27 8.30 -40.82 -0.34 4.93 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.12 1.09 7.54 -51.93 -0.39 0.69 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -32.58 326.59 -9.08 -41.66 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.08 Total: 0.53 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.89 Total: -8.72 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.42 Total: -36.92 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.13 Total: -14.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.58 -9.08 -41.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273013809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.629 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds