Wall clock time and date at job start Tue Mar 31 2020 22:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34916 * 117.00073 * 2 1 4 4 O 1.21646 * 119.99737 * 0.28259 * 3 2 1 5 5 C 1.46246 * 119.99680 * 179.97438 * 3 2 1 6 6 S 1.75829 * 125.46883 * 0.03196 * 5 3 2 7 7 C 1.70607 * 91.58672 * 179.97438 * 6 5 3 8 8 S 1.76194 * 124.49411 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.40240 * 113.56865 * 8 7 6 10 10 O 1.42107 * 106.40481 * 246.48242 * 8 7 6 11 11 N 1.65594 * 107.21951 * 0.02669 * 8 7 6 12 12 C 1.36933 * 120.00490 * 64.99874 * 11 8 7 13 13 H 1.08004 * 119.99623 * 0.02562 * 12 11 8 14 14 C 1.38804 * 120.00533 * 180.02562 * 12 11 8 15 15 N 1.31627 * 120.00052 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00252 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47284 * 90.00017 * 16 14 12 18 18 H 1.48499 * 109.47344 * 209.99933 * 16 14 12 19 19 H 1.48500 * 109.47096 * 329.99646 * 16 14 12 20 20 C 1.33816 * 111.00822 * 0.02562 * 7 6 5 21 21 C 1.50697 * 122.44324 * 180.02562 * 20 7 6 22 22 C 1.36897 * 125.46197 * 179.71879 * 5 3 2 23 23 Cl 1.73605 * 123.38664 * 0.02562 * 22 5 3 24 24 H 1.08998 * 109.47329 * 59.99740 * 1 2 3 25 25 H 1.09005 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46611 * 299.99462 * 1 2 3 27 27 H 0.97008 * 119.99929 * 245.00044 * 11 8 7 28 28 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.46832 * 90.00084 * 21 20 7 30 30 H 1.09009 * 109.46699 * 209.99316 * 21 20 7 31 31 H 1.08993 * 109.47204 * 329.99381 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2021 0.0000 4 8 1.3790 2.2223 0.0052 5 6 3.5020 1.2785 0.0006 6 16 4.5957 -0.0982 0.0005 7 6 5.9604 0.9257 0.0006 8 16 7.6301 0.3629 0.0012 9 8 8.1848 0.7508 -1.2482 10 8 8.1838 0.7505 1.2513 11 7 7.5894 -1.2926 0.0009 12 6 7.0720 -1.9647 -1.0741 13 1 6.6908 -1.4150 -1.9221 14 6 7.0374 -3.3523 -1.0741 15 7 7.5024 -4.0222 -0.0409 16 14 6.3323 -4.2690 -2.5410 17 1 7.4145 -4.5436 -3.5200 18 1 5.7402 -5.5522 -2.0848 19 1 5.2814 -3.4401 -3.1842 20 6 5.5945 2.2128 0.0012 21 6 6.5967 3.3382 0.0009 22 6 4.2369 2.4335 -0.0048 23 17 3.5267 4.0177 -0.0128 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 7.9321 -1.7863 0.7624 28 1 7.4786 -4.9918 -0.0411 29 1 6.8376 3.6098 -1.0269 30 1 6.1739 4.2013 0.5152 31 1 7.5033 3.0176 0.5141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278967946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:25 Heat of formation + Delta-G solvation = -131.803063 kcal Electronic energy + Delta-G solvation = -22857.753047 eV Core-core repulsion = 18998.408709 eV Total energy + Delta-G solvation = -3859.344338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50149 -38.49313 -36.51450 -36.15505 -36.13086 -34.95355 -34.86467 -31.43526 -31.27027 -28.34368 -27.55833 -24.82007 -24.69168 -21.24054 -20.10635 -18.76171 -18.48141 -18.05151 -17.27044 -16.84717 -16.57360 -15.93430 -15.34586 -14.99974 -14.68406 -14.44626 -14.31398 -13.70041 -13.62577 -13.33475 -12.77908 -12.40706 -12.30190 -12.17035 -12.03016 -11.54369 -11.44307 -11.39010 -11.23967 -11.13539 -11.03965 -10.87418 -10.76633 -10.71977 -10.53569 -10.46239 -10.33429 -10.22348 -8.99082 -8.58597 -8.21883 -6.77353 -4.19077 0.11548 1.22873 1.32344 1.85564 1.97167 2.46544 2.59698 2.74010 3.05222 3.10866 3.12324 3.83542 4.21047 4.45837 4.72945 4.84261 4.90001 4.98863 5.05584 5.24443 5.35929 5.51012 5.67313 5.70247 5.73071 6.08916 6.19759 6.24887 6.77223 7.18677 7.60305 8.37985 8.47276 8.92103 10.36366 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.005694 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.304756 B = 4916.022477 C = 6809.161492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.539 3.461 4 O -0.483 6.483 5 C -0.279 4.279 6 S 0.434 5.566 7 C -0.772 4.772 8 S 2.602 3.398 9 O -0.955 6.955 10 O -0.988 6.988 11 N -0.941 5.941 12 C -0.277 4.277 13 H 0.110 0.890 14 C 0.041 3.959 15 N -0.856 5.856 16 Si 0.921 3.079 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.016 4.016 21 C -0.123 4.123 22 C 0.015 3.985 23 Cl -0.023 7.023 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.415 0.585 28 H 0.281 0.719 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 4.966 0.169 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 C 0.382 3.618 4 O -0.372 6.372 5 C -0.400 4.400 6 S 0.709 5.291 7 C -0.965 4.965 8 S 2.688 3.312 9 O -0.945 6.945 10 O -0.976 6.976 11 N -0.694 5.694 12 C -0.421 4.421 13 H 0.128 0.872 14 C -0.171 4.171 15 N -0.496 5.496 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.031 4.031 21 C -0.182 4.182 22 C -0.031 4.031 23 Cl 0.006 6.994 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.251 0.749 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.605 4.470 0.183 10.596 hybrid contribution -1.045 1.003 -0.278 1.475 sum -10.650 5.473 -0.095 11.975 Atomic orbital electron populations 1.22940 0.76261 1.03946 1.02521 1.86188 1.23687 1.32109 1.84572 1.19469 0.86833 0.81925 0.73548 1.90916 1.65806 1.35415 1.45014 1.24023 0.95613 1.00632 1.19697 1.83577 0.87319 0.99701 1.58507 1.36652 1.35369 1.06186 1.18342 1.07925 0.76005 0.73622 0.73640 1.93496 1.75255 1.82442 1.43309 1.93442 1.77630 1.82750 1.43827 1.51985 1.68595 1.22728 1.26106 1.19529 1.38283 0.90582 0.93755 0.87213 1.25348 0.96573 0.96628 0.98520 1.69688 1.41300 1.09153 1.29478 0.85984 0.79664 0.79171 0.80539 1.19618 1.20233 1.18622 1.17742 0.92307 0.93813 0.99261 1.20913 0.97257 0.95887 1.04096 1.20216 0.91930 0.86726 1.04190 1.98363 1.83210 1.21579 1.96291 0.91968 0.87697 0.91991 0.74864 0.90877 0.89210 0.89884 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.45 101.05 1.06 1.42 16 2 O -0.35 -4.85 10.32 -41.08 -0.42 -5.27 16 3 C 0.54 8.67 7.91 33.95 0.27 8.93 16 4 O -0.48 -8.26 14.86 -19.38 -0.29 -8.55 16 5 C -0.28 -4.76 6.45 -36.85 -0.24 -4.99 16 6 S 0.43 7.54 21.55 -107.50 -2.32 5.22 16 7 C -0.77 -14.84 6.21 29.18 0.18 -14.66 16 8 S 2.60 55.84 4.76 -107.50 -0.51 55.33 16 9 O -0.96 -22.44 17.72 -57.17 -1.01 -23.46 16 10 O -0.99 -22.53 17.29 -57.17 -0.99 -23.51 16 11 N -0.94 -20.80 5.53 31.49 0.17 -20.63 16 12 C -0.28 -6.27 8.57 -15.06 -0.13 -6.40 16 13 H 0.11 2.38 7.82 -52.48 -0.41 1.97 16 14 C 0.04 0.91 5.50 -17.43 -0.10 0.82 16 15 N -0.86 -20.21 13.06 55.49 0.72 -19.49 16 16 Si 0.92 17.58 29.55 -169.99 -5.02 12.55 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 20 C -0.02 -0.29 5.78 -106.43 -0.62 -0.90 16 21 C -0.12 -1.94 9.54 36.00 0.34 -1.60 16 22 C 0.01 0.25 6.39 -40.32 -0.26 0.00 16 23 Cl -0.02 -0.36 26.19 -51.86 -1.36 -1.72 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.41 9.20 8.02 -34.47 -0.28 8.92 16 28 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.11 7.41 -51.92 -0.38 0.72 16 31 H 0.08 1.29 6.67 -51.93 -0.35 0.95 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -28.27 319.72 -7.94 -36.21 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.24 Total: 5.87 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 0.51 Total: -17.38 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.90 Total: -40.12 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -2.71 Total: -60.79 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.55 kcal Atomic # 16 Polarization: 63.38 SS G_CDS: -2.83 Total: 60.55 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.36 Total: -1.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.27 -7.94 -36.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278967946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.595 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds