Wall clock time and date at job start Tue Mar 31 2020 22:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34916 * 117.00073 * 2 1 4 4 O 1.21646 * 119.99737 * 0.28259 * 3 2 1 5 5 C 1.46246 * 119.99680 * 179.97438 * 3 2 1 6 6 S 1.75829 * 125.46883 * 0.03196 * 5 3 2 7 7 C 1.70607 * 91.58672 * 179.97438 * 6 5 3 8 8 S 1.76194 * 124.49411 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.40240 * 113.56865 * 8 7 6 10 10 O 1.42107 * 106.40481 * 246.48242 * 8 7 6 11 11 N 1.65594 * 107.21951 * 0.02669 * 8 7 6 12 12 C 1.36933 * 120.00490 * 64.99874 * 11 8 7 13 13 H 1.08004 * 119.99623 * 0.02562 * 12 11 8 14 14 C 1.38804 * 120.00533 * 180.02562 * 12 11 8 15 15 N 1.31627 * 120.00052 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00252 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47284 * 90.00017 * 16 14 12 18 18 H 1.48499 * 109.47344 * 209.99933 * 16 14 12 19 19 H 1.48500 * 109.47096 * 329.99646 * 16 14 12 20 20 C 1.33816 * 111.00822 * 0.02562 * 7 6 5 21 21 C 1.50697 * 122.44324 * 180.02562 * 20 7 6 22 22 C 1.36897 * 125.46197 * 179.71879 * 5 3 2 23 23 Cl 1.73605 * 123.38664 * 0.02562 * 22 5 3 24 24 H 1.08998 * 109.47329 * 59.99740 * 1 2 3 25 25 H 1.09005 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46611 * 299.99462 * 1 2 3 27 27 H 0.97008 * 119.99929 * 245.00044 * 11 8 7 28 28 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.46832 * 90.00084 * 21 20 7 30 30 H 1.09009 * 109.46699 * 209.99316 * 21 20 7 31 31 H 1.08993 * 109.47204 * 329.99381 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2021 0.0000 4 8 1.3790 2.2223 0.0052 5 6 3.5020 1.2785 0.0006 6 16 4.5957 -0.0982 0.0005 7 6 5.9604 0.9257 0.0006 8 16 7.6301 0.3629 0.0012 9 8 8.1848 0.7508 -1.2482 10 8 8.1838 0.7505 1.2513 11 7 7.5894 -1.2926 0.0009 12 6 7.0720 -1.9647 -1.0741 13 1 6.6908 -1.4150 -1.9221 14 6 7.0374 -3.3523 -1.0741 15 7 7.5024 -4.0222 -0.0409 16 14 6.3323 -4.2690 -2.5410 17 1 7.4145 -4.5436 -3.5200 18 1 5.7402 -5.5522 -2.0848 19 1 5.2814 -3.4401 -3.1842 20 6 5.5945 2.2128 0.0012 21 6 6.5967 3.3382 0.0009 22 6 4.2369 2.4335 -0.0048 23 17 3.5267 4.0177 -0.0128 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 7.9321 -1.7863 0.7624 28 1 7.4786 -4.9918 -0.0411 29 1 6.8376 3.6098 -1.0269 30 1 6.1739 4.2013 0.5152 31 1 7.5033 3.0176 0.5141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278967946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:24 Heat of formation + Delta-G solvation = -150.609902 kcal Electronic energy + Delta-G solvation = -22858.568572 eV Core-core repulsion = 18998.408709 eV Total energy + Delta-G solvation = -3860.159863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69303 -39.84583 -38.01658 -37.70265 -37.44859 -36.73851 -36.62567 -32.98908 -32.73841 -29.49104 -28.76493 -26.51185 -25.95285 -22.47797 -21.64722 -20.19927 -20.10870 -19.68807 -18.66779 -18.25382 -17.69152 -17.41685 -16.85110 -16.72286 -16.23382 -15.76160 -15.72861 -15.33100 -14.80529 -14.43092 -14.12677 -13.90473 -13.56418 -13.47492 -13.17113 -13.11226 -13.07540 -12.97708 -12.88421 -12.70786 -12.67281 -12.33391 -12.20990 -12.04409 -11.97770 -11.86275 -11.83495 -11.67255 -10.42776 -10.28049 -9.58834 -8.41055 -5.95226 -1.29975 -0.47863 -0.06376 0.41146 0.58304 1.13980 1.43944 1.44440 1.54027 1.56493 1.64734 2.22115 2.56299 2.72033 3.14684 3.51546 3.55875 3.87644 3.94146 4.12303 4.26023 4.31615 4.38088 4.50537 4.68695 4.75459 4.97149 5.06545 5.07639 5.52970 6.41209 6.67374 6.82688 7.22557 8.75138 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.005694 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.304756 B = 4916.022477 C = 6809.161492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.540 3.460 4 O -0.494 6.494 5 C -0.270 4.270 6 S 0.454 5.546 7 C -0.808 4.808 8 S 2.656 3.344 9 O -0.976 6.976 10 O -0.999 6.999 11 N -0.958 5.958 12 C -0.310 4.310 13 H 0.113 0.887 14 C 0.004 3.996 15 N -0.901 5.901 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.250 1.250 20 C -0.006 4.006 21 C -0.133 4.133 22 C 0.001 3.999 23 Cl -0.005 7.005 24 H 0.067 0.933 25 H 0.137 0.863 26 H 0.067 0.933 27 H 0.413 0.587 28 H 0.280 0.720 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 6.086 -0.210 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.383 3.617 4 O -0.383 6.383 5 C -0.391 4.391 6 S 0.728 5.272 7 C -1.006 5.006 8 S 2.743 3.257 9 O -0.966 6.966 10 O -0.989 6.989 11 N -0.712 5.712 12 C -0.449 4.449 13 H 0.131 0.869 14 C -0.202 4.202 15 N -0.541 5.541 16 Si 0.793 3.207 17 H -0.201 1.201 18 H -0.200 1.200 19 H -0.173 1.173 20 C -0.022 4.022 21 C -0.191 4.191 22 C -0.044 4.044 23 Cl 0.024 6.976 24 H 0.085 0.915 25 H 0.155 0.845 26 H 0.086 0.914 27 H 0.249 0.751 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.424 5.488 -0.231 12.676 hybrid contribution -0.623 0.977 -0.081 1.161 sum -12.047 6.465 -0.312 13.675 Atomic orbital electron populations 1.23347 0.73878 1.06322 1.03061 1.86187 1.25986 1.30719 1.83910 1.19351 0.86386 0.82499 0.73439 1.90910 1.65882 1.35963 1.45561 1.24278 0.96480 1.00428 1.17929 1.83559 0.86406 0.99153 1.58033 1.36086 1.34216 1.07577 1.22736 1.04859 0.75270 0.72850 0.72757 1.93484 1.76049 1.82772 1.44336 1.93445 1.78074 1.82952 1.44392 1.51599 1.70876 1.22230 1.26541 1.19626 1.39561 0.91014 0.94678 0.86949 1.25967 0.96793 0.97042 1.00388 1.69762 1.44021 1.09163 1.31174 0.85248 0.79155 0.78335 0.77938 1.20129 1.19962 1.17311 1.18029 0.93259 0.93765 0.97169 1.21112 0.96522 0.96128 1.05376 1.20241 0.91675 0.87762 1.04681 1.98369 1.82868 1.20187 1.96221 0.91452 0.84473 0.91438 0.75102 0.91009 0.87655 0.87318 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.45 113.37 1.18 1.63 16 2 O -0.35 -8.90 10.32 -58.31 -0.60 -9.51 16 3 C 0.54 16.15 7.91 69.90 0.55 16.71 16 4 O -0.49 -15.70 14.86 19.36 0.29 -15.41 16 5 C -0.27 -8.67 6.45 24.04 0.16 -8.51 16 6 S 0.45 15.23 21.55 -56.49 -1.22 14.01 16 7 C -0.81 -30.20 6.21 66.81 0.41 -29.79 16 8 S 2.66 113.09 4.76 -56.49 -0.27 112.82 16 9 O -0.98 -45.42 17.72 -128.00 -2.27 -47.69 16 10 O -1.00 -45.07 17.29 -128.00 -2.21 -47.28 16 11 N -0.96 -43.00 5.53 -54.27 -0.30 -43.30 16 12 C -0.31 -14.18 8.57 84.03 0.72 -13.46 16 13 H 0.11 4.91 7.82 -2.91 -0.02 4.89 16 14 C 0.00 0.20 5.50 84.86 0.47 0.67 16 15 N -0.90 -43.75 13.06 21.65 0.28 -43.47 16 16 Si 0.97 36.04 29.55 68.60 2.03 38.07 16 17 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 19 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 20 C -0.01 -0.19 5.78 -21.03 -0.12 -0.32 16 21 C -0.13 -3.92 9.54 71.24 0.68 -3.24 16 22 C 0.00 0.05 6.39 21.79 0.14 0.18 16 23 Cl -0.01 -0.16 26.19 -2.72 -0.07 -0.23 16 24 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 25 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.41 18.86 8.02 -96.74 -0.78 18.08 16 28 H 0.28 12.81 8.31 -92.72 -0.77 12.04 16 29 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.11 2.60 7.41 -2.38 -0.02 2.58 16 31 H 0.07 2.19 6.67 -2.39 -0.02 2.17 16 Total: -1.00 -59.15 319.72 0.29 -58.86 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.44 Total: 19.24 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 4.19 Total: -36.13 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -0.02 Total: -86.77 kcal Atomic # 8 Polarization: -115.09 SS G_CDS: -4.80 Total: -119.89 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Atomic # 16 Polarization: 128.32 SS G_CDS: -1.49 Total: 126.84 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.07 Total: -0.23 kcal Total: -59.15 0.29 -58.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278967946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.745 kcal (2) G-P(sol) polarization free energy of solvation -59.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds