Wall clock time and date at job start Tue Mar 31 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 O 1.42905 * 109.46592 * 59.99738 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 13 13 N 1.46499 * 109.47101 * 175.00065 * 12 9 7 14 14 N 1.40436 * 126.81840 * 90.02409 * 13 12 9 15 15 C 1.30753 * 106.81963 * 179.97438 * 14 13 12 16 16 Br 1.89099 * 125.52397 * 179.97438 * 15 14 13 17 17 N 1.33320 * 108.94638 * 0.02562 * 15 14 13 18 18 C 1.30942 * 109.79741 * 359.74450 * 17 15 14 19 19 Br 1.89107 * 125.96411 * 180.25574 * 18 17 15 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 0.96693 * 113.99902 * 60.00946 * 11 9 7 22 22 H 1.08994 * 109.46986 * 295.00216 * 12 9 7 23 23 H 1.09004 * 109.46916 * 55.00165 * 12 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5750 -1.1666 12 6 2.2454 -3.6621 0.0005 13 7 1.5169 -4.9274 0.1209 14 7 1.0243 -5.7182 -0.9299 15 6 0.4433 -6.7542 -0.3835 16 35 -0.4028 -8.1613 -1.3218 17 7 0.5431 -6.6572 0.9424 18 6 1.1915 -5.5648 1.2596 19 35 1.5963 -4.9829 3.0128 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9224 -2.5299 -1.9975 22 1 2.8116 -3.6559 -0.9308 23 1 2.9295 -3.5552 0.8424 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287482243.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:44 Heat of formation + Delta-G solvation = 18.693011 kcal Electronic energy + Delta-G solvation = -14016.277902 eV Core-core repulsion = 11186.267272 eV Total energy + Delta-G solvation = -2830.010631 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 338.896 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.53228 -38.57906 -35.34384 -34.35286 -33.96294 -32.72222 -31.67039 -30.05261 -26.78723 -24.13016 -23.06324 -22.64916 -19.66312 -18.43757 -17.67103 -16.81231 -16.40008 -16.03661 -15.65228 -15.32309 -14.82053 -14.34206 -13.91475 -13.20369 -12.97789 -12.58907 -12.53872 -12.18334 -12.11805 -12.00534 -11.92525 -11.67228 -11.53707 -11.10090 -10.70983 -10.66349 -10.14782 -8.65255 -6.53486 -0.66635 -0.44468 -0.06116 1.11164 1.25456 1.59021 1.64709 1.83350 2.57481 2.99765 3.14689 3.68696 3.84821 3.97657 4.28519 4.37284 4.61051 5.03510 5.17342 5.68625 6.07227 6.25657 6.47826 7.02441 7.42992 8.72530 Molecular weight = 338.90amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.004843 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.064883 B = 5780.707704 C = 7187.800835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 1.116 2.884 4 H -0.293 1.293 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.653 4.653 8 H 0.071 0.929 9 C 0.209 3.791 10 H 0.029 0.971 11 O -0.588 6.588 12 C 0.102 3.898 13 N -0.325 5.325 14 N -0.266 5.266 15 C 0.197 3.803 16 Br 0.118 6.882 17 N -0.505 5.505 18 C 0.254 3.746 19 Br 0.122 6.878 20 H 0.266 0.734 21 H 0.367 0.633 22 H 0.115 0.885 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -14.365 2.595 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.215 4.215 3 Si 0.938 3.062 4 H -0.219 1.219 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.691 4.691 8 H 0.089 0.911 9 C 0.150 3.850 10 H 0.047 0.953 11 O -0.394 6.394 12 C -0.018 4.018 13 N -0.117 5.117 14 N -0.099 5.099 15 C -0.164 4.164 16 Br 0.196 6.804 17 N -0.236 5.236 18 C -0.100 4.100 19 Br 0.201 6.799 20 H 0.076 0.924 21 H 0.214 0.786 22 H 0.133 0.867 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.921 -13.130 2.798 13.986 hybrid contribution 0.447 -1.333 -0.361 1.451 sum 4.369 -14.463 2.437 15.304 Atomic orbital electron populations 1.70795 1.08337 1.31216 1.44894 1.27283 0.96274 1.06517 0.91425 0.82954 0.74068 0.70978 0.78249 1.21852 1.18953 1.19239 1.22571 0.95303 0.92041 1.59149 0.91107 1.19761 0.88466 0.91340 0.85399 0.95346 1.86498 1.39802 1.96405 1.16688 1.23204 0.95018 0.76910 1.06713 1.50866 1.39824 1.18887 1.02151 1.78252 1.16831 1.03806 1.11014 1.26115 1.02632 0.97146 0.90474 1.96791 1.75987 1.36764 1.70843 1.70508 1.21159 1.18983 1.12995 1.26380 0.99703 0.92213 0.91721 1.96938 1.92072 1.87376 1.03551 0.92360 0.78606 0.86663 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.53 21.45 0.29 -53.71 14 2 C -0.01 -0.63 5.40 84.65 0.46 -0.18 14 3 Si 1.12 45.67 29.90 68.60 2.05 47.72 14 4 H -0.29 -12.48 7.11 99.48 0.71 -11.77 14 5 H -0.26 -9.86 7.11 99.48 0.71 -9.16 14 6 H -0.27 -10.07 7.11 99.48 0.71 -9.36 14 7 C -0.65 -32.06 8.76 25.60 0.22 -31.83 14 8 H 0.07 3.22 7.74 -2.91 -0.02 3.20 14 9 C 0.21 9.59 2.67 29.85 0.08 9.67 14 10 H 0.03 1.48 8.01 -2.39 -0.02 1.46 14 11 O -0.59 -28.68 11.96 -148.98 -1.78 -30.46 14 12 C 0.10 3.67 5.88 86.38 0.51 4.18 14 13 N -0.32 -12.03 3.58 -346.32 -1.24 -13.27 14 14 N -0.27 -10.08 12.70 -57.06 -0.72 -10.81 14 15 C 0.20 6.93 8.69 180.73 1.57 8.50 14 16 Br 0.12 3.09 34.13 -20.37 -0.70 2.40 14 17 N -0.51 -18.22 11.20 -193.71 -2.17 -20.39 14 18 C 0.25 8.95 8.46 180.31 1.53 10.48 14 19 Br 0.12 3.41 33.45 -20.37 -0.68 2.73 14 20 H 0.27 16.34 6.47 -92.71 -0.60 15.74 14 21 H 0.37 15.96 9.04 -74.06 -0.67 15.29 14 22 H 0.12 3.84 8.14 -2.39 -0.02 3.82 14 23 H 0.13 3.99 7.70 -2.38 -0.02 3.97 14 Total: -1.00 -61.97 258.74 0.19 -61.78 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.77 Total: 13.20 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 4.37 Total: 0.81 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -3.84 Total: -98.18 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.78 Total: -30.46 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.05 Total: 47.72 kcal Atomic # 35 Polarization: 6.51 SS G_CDS: -1.38 Total: 5.13 kcal Total: -61.97 0.19 -61.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287482243.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.475 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds