Wall clock time and date at job start Tue Mar 31 2020 22:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.38706 * 110.99971 * 137.58421 * 12 11 9 14 14 C 1.40613 * 119.75003 * 80.63903 * 13 12 11 15 15 N 1.31110 * 120.60758 * 180.02562 * 14 13 12 16 16 C 1.33905 * 119.86441 * 359.97378 * 15 14 13 17 17 C 1.40519 * 120.94507 * 180.02562 * 16 15 14 18 18 C 1.36196 * 119.75554 * 179.97438 * 17 16 15 19 19 Cl 1.73596 * 119.54799 * 180.02562 * 18 17 16 20 20 C 1.39574 * 120.89983 * 359.97438 * 18 17 16 21 21 Cl 1.73603 * 119.55442 * 180.02562 * 20 18 17 22 22 C 1.36216 * 120.89279 * 0.02562 * 20 18 17 23 23 C 1.40502 * 119.73736 * 359.95265 * 22 20 18 24 24 N 1.31941 * 119.75168 * 260.36658 * 13 12 11 25 25 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 28 28 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 29 29 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 30 30 H 1.08001 * 119.69447 * 359.97438 * 14 13 12 31 31 H 1.08001 * 120.12213 * 0.02562 * 17 16 15 32 32 H 1.07993 * 120.12715 * 179.97438 * 22 20 18 33 33 H 1.08996 * 113.76309 * 220.98440 * 25 12 11 34 34 H 1.09009 * 113.75512 * 89.62716 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3153 -2.9799 -2.0106 14 6 6.2052 -2.6591 -3.0510 15 7 6.4233 -3.5060 -4.0278 16 6 5.7950 -4.6885 -4.0379 17 6 6.0123 -5.6134 -5.0732 18 6 5.3608 -6.8093 -5.0590 19 17 5.6337 -7.9482 -6.3404 20 6 4.4774 -7.1321 -4.0276 21 17 3.6661 -8.6667 -4.0440 22 6 4.2434 -6.2592 -3.0084 23 6 4.8987 -5.0165 -2.9908 24 7 4.6901 -4.1417 -1.9986 25 6 4.1311 -2.6032 -0.0006 26 1 -0.4850 0.8401 0.0004 27 1 3.7022 0.5733 0.9700 28 1 3.4728 -1.3367 -2.2108 29 1 4.5846 -0.0508 -1.5657 30 1 6.7131 -1.7060 -3.0458 31 1 6.6941 -5.3771 -5.8768 32 1 3.5571 -6.5215 -2.2169 33 1 4.5837 -2.8845 0.9502 34 1 3.4721 -3.3725 -0.4033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302458925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:09 Heat of formation + Delta-G solvation = 74.696484 kcal Electronic energy + Delta-G solvation = -23887.926968 eV Core-core repulsion = 20068.175311 eV Total energy + Delta-G solvation = -3819.751657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80948 -39.89657 -38.15373 -36.89183 -36.33337 -35.39781 -34.35177 -32.56798 -30.89577 -30.79416 -27.99102 -26.23801 -25.31748 -24.61066 -22.84774 -22.61674 -19.48179 -18.98509 -18.41283 -17.79148 -17.08308 -16.38628 -16.08866 -15.81474 -15.52374 -14.99382 -14.62882 -14.33098 -13.99996 -13.61010 -13.31080 -13.15619 -12.90318 -12.74943 -12.46383 -12.35105 -12.13565 -11.86154 -11.55469 -11.50025 -11.24085 -11.18148 -11.08136 -10.83118 -10.64716 -10.16584 -9.67074 -9.42028 -9.25181 -9.03042 -8.92306 -8.78400 -8.18236 -6.44541 -4.50396 -0.14743 0.17141 1.44339 1.61171 1.79485 2.22060 2.97268 2.98833 3.12649 3.56638 3.73559 3.86959 3.98311 4.00569 4.12832 4.44283 4.62986 4.77161 4.82550 5.09027 5.18111 5.31646 5.35266 5.46510 5.49461 5.58752 5.77507 5.87589 6.05465 6.22850 6.34217 6.43586 6.68514 7.07133 7.18280 7.32769 7.60130 8.01158 8.48218 8.60024 9.12792 10.67669 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.002939 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.183733 B = 9524.465278 C =10201.801776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.079 3.921 3 Si 0.860 3.140 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.284 1.284 7 C -0.537 4.537 8 H 0.090 0.910 9 C 0.204 3.796 10 O -0.549 6.549 11 C -0.014 4.014 12 N -0.432 5.432 13 C 0.281 3.719 14 C 0.106 3.894 15 N -0.412 5.412 16 C 0.056 3.944 17 C -0.046 4.046 18 C -0.032 4.032 19 Cl -0.043 7.043 20 C -0.013 4.013 21 Cl -0.039 7.039 22 C -0.063 4.063 23 C 0.121 3.879 24 N -0.461 5.461 25 C 0.037 3.963 26 H 0.271 0.729 27 H 0.350 0.650 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.182 0.818 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.781 -10.962 -10.210 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.127 4.127 3 Si 0.688 3.312 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.211 1.211 7 C -0.575 4.575 8 H 0.108 0.892 9 C 0.163 3.837 10 O -0.359 6.359 11 C -0.140 4.140 12 N -0.152 5.152 13 C 0.033 3.967 14 C -0.074 4.074 15 N -0.125 5.125 16 C -0.068 4.068 17 C -0.066 4.066 18 C -0.062 4.062 19 Cl -0.014 7.014 20 C -0.043 4.043 21 Cl -0.010 7.010 22 C -0.083 4.083 23 C -0.005 4.005 24 N -0.181 5.181 25 C -0.090 4.090 26 H 0.081 0.919 27 H 0.202 0.798 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.199 0.801 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.107 0.893 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.500 -11.622 -10.075 19.205 hybrid contribution -0.614 0.969 -0.523 1.261 sum 10.886 -10.653 -10.598 18.555 Atomic orbital electron populations 1.69865 1.06123 1.27638 1.47502 1.25039 0.94941 0.99107 0.93577 0.87320 0.80371 0.84239 0.79266 1.19173 1.18049 1.21074 1.21313 0.87912 0.95632 1.52635 0.89222 1.20447 0.92647 0.87490 0.83107 1.86489 1.67406 1.24161 1.57888 1.25381 0.91317 0.94038 1.03238 1.66037 1.35137 1.07588 1.06424 1.22156 0.90809 0.91502 0.92216 1.23815 0.94988 0.99752 0.88873 1.68616 1.19953 1.00902 1.23047 1.19241 0.97814 0.93795 0.95933 1.20509 0.98360 0.89881 0.97842 1.20268 1.00417 0.93171 0.92314 1.98396 1.95347 1.59368 1.48279 1.20345 0.97688 0.90182 0.96067 1.98406 1.77473 1.26913 1.98231 1.20627 0.99456 0.90350 0.97892 1.19248 0.95400 0.94342 0.91519 1.68836 1.21310 1.03566 1.24382 1.24163 0.91930 0.97982 0.94959 0.91895 0.79782 0.89831 0.89269 0.80077 0.82599 0.82246 0.89331 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.53 13.96 55.43 0.77 -23.76 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.86 18.63 24.34 -169.99 -4.14 14.49 16 4 H -0.27 -5.60 7.06 56.52 0.40 -5.20 16 5 H -0.26 -5.09 5.27 56.52 0.30 -4.80 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.86 9.20 -34.44 -0.32 -14.18 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.20 4.53 1.05 -90.84 -0.10 4.44 16 10 O -0.55 -12.44 13.32 -35.23 -0.47 -12.91 16 11 C -0.01 -0.26 6.47 -2.76 -0.02 -0.28 16 12 N -0.43 -7.82 6.24 -176.34 -1.10 -8.92 16 13 C 0.28 4.64 5.89 -155.14 -0.91 3.72 16 14 C 0.11 1.49 11.07 -16.96 -0.19 1.31 16 15 N -0.41 -5.81 10.45 -10.61 -0.11 -5.92 16 16 C 0.06 0.77 6.59 -84.79 -0.56 0.21 16 17 C -0.05 -0.52 9.72 -39.46 -0.38 -0.90 16 18 C -0.03 -0.35 6.28 -39.82 -0.25 -0.60 16 19 Cl -0.04 -0.42 27.87 -51.86 -1.45 -1.86 16 20 C -0.01 -0.15 6.28 -39.81 -0.25 -0.40 16 21 Cl -0.04 -0.41 27.87 -51.86 -1.45 -1.86 16 22 C -0.06 -0.80 9.72 -39.46 -0.38 -1.18 16 23 C 0.12 1.79 6.59 -84.79 -0.56 1.24 16 24 N -0.46 -7.71 8.31 -10.03 -0.08 -7.79 16 25 C 0.04 0.73 7.04 -2.77 -0.02 0.71 16 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.35 7.61 3.32 45.56 0.15 7.76 16 28 H 0.08 1.63 7.86 -51.93 -0.41 1.23 16 29 H 0.09 1.62 6.97 -51.93 -0.36 1.26 16 30 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.11 2.16 6.63 -51.92 -0.34 1.82 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -27.62 316.61 -9.60 -37.22 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.32 Total: 10.50 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -4.03 Total: -3.96 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.52 Total: -46.39 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.47 Total: -12.91 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.14 Total: 14.49 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -2.89 Total: -3.72 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.62 -9.60 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302458925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.918 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds