Wall clock time and date at job start Tue Mar 31 2020 22:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.38706 * 110.99971 * 137.58421 * 12 11 9 14 14 C 1.40613 * 119.75003 * 80.63903 * 13 12 11 15 15 N 1.31110 * 120.60758 * 180.02562 * 14 13 12 16 16 C 1.33905 * 119.86441 * 359.97378 * 15 14 13 17 17 C 1.40519 * 120.94507 * 180.02562 * 16 15 14 18 18 C 1.36196 * 119.75554 * 179.97438 * 17 16 15 19 19 Cl 1.73596 * 119.54799 * 180.02562 * 18 17 16 20 20 C 1.39574 * 120.89983 * 359.97438 * 18 17 16 21 21 Cl 1.73603 * 119.55442 * 180.02562 * 20 18 17 22 22 C 1.36216 * 120.89279 * 0.02562 * 20 18 17 23 23 C 1.40502 * 119.73736 * 359.95265 * 22 20 18 24 24 N 1.31941 * 119.75168 * 260.36658 * 13 12 11 25 25 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 28 28 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 29 29 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 30 30 H 1.08001 * 119.69447 * 359.97438 * 14 13 12 31 31 H 1.08001 * 120.12213 * 0.02562 * 17 16 15 32 32 H 1.07993 * 120.12715 * 179.97438 * 22 20 18 33 33 H 1.08996 * 113.76309 * 220.98440 * 25 12 11 34 34 H 1.09009 * 113.75512 * 89.62716 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3153 -2.9799 -2.0106 14 6 6.2052 -2.6591 -3.0510 15 7 6.4233 -3.5060 -4.0278 16 6 5.7950 -4.6885 -4.0379 17 6 6.0123 -5.6134 -5.0732 18 6 5.3608 -6.8093 -5.0590 19 17 5.6337 -7.9482 -6.3404 20 6 4.4774 -7.1321 -4.0276 21 17 3.6661 -8.6667 -4.0440 22 6 4.2434 -6.2592 -3.0084 23 6 4.8987 -5.0165 -2.9908 24 7 4.6901 -4.1417 -1.9986 25 6 4.1311 -2.6032 -0.0006 26 1 -0.4850 0.8401 0.0004 27 1 3.7022 0.5733 0.9700 28 1 3.4728 -1.3367 -2.2108 29 1 4.5846 -0.0508 -1.5657 30 1 6.7131 -1.7060 -3.0458 31 1 6.6941 -5.3771 -5.8768 32 1 3.5571 -6.5215 -2.2169 33 1 4.5837 -2.8845 0.9502 34 1 3.4721 -3.3725 -0.4033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302458925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:08 Heat of formation + Delta-G solvation = 54.690198 kcal Electronic energy + Delta-G solvation = -23888.794506 eV Core-core repulsion = 20068.175311 eV Total energy + Delta-G solvation = -3820.619195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.028 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.98146 -41.28713 -39.21974 -37.77715 -37.44866 -36.73821 -35.63825 -34.55383 -32.07162 -31.87660 -29.52092 -27.72484 -26.89057 -25.79775 -24.03319 -23.80121 -21.10584 -20.15775 -19.61220 -19.37813 -18.39067 -18.15370 -17.25634 -17.01061 -16.78206 -16.07415 -15.93470 -15.56674 -15.26264 -15.00457 -14.91124 -14.55115 -14.22531 -13.97730 -13.85239 -13.62078 -13.30345 -13.15377 -12.78098 -12.64103 -12.61289 -12.42474 -12.36802 -12.07711 -12.06051 -11.87143 -11.28545 -11.01708 -10.74823 -10.63353 -10.28445 -9.90493 -9.48513 -8.44297 -6.56839 -1.18662 -0.90196 0.52937 0.54074 0.86709 1.18705 1.25070 1.29300 1.40790 2.17527 2.33093 2.61409 2.74499 2.83942 2.90615 2.99123 3.32113 3.45657 3.67236 3.75987 3.88571 4.04525 4.10936 4.30656 4.34630 4.47422 4.48956 4.61749 4.71739 4.82275 4.91520 5.03202 5.06463 5.28648 5.81903 6.00722 6.06023 6.44427 6.50231 6.71249 7.11188 8.71551 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.002939 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.183733 B = 9524.465278 C =10201.801776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.022 3.978 3 Si 0.922 3.078 4 H -0.252 1.252 5 H -0.223 1.223 6 H -0.284 1.284 7 C -0.548 4.548 8 H 0.046 0.954 9 C 0.192 3.808 10 O -0.552 6.552 11 C -0.002 4.002 12 N -0.421 5.421 13 C 0.260 3.740 14 C 0.111 3.889 15 N -0.411 5.411 16 C 0.052 3.948 17 C -0.041 4.041 18 C -0.026 4.026 19 Cl -0.024 7.024 20 C -0.008 4.008 21 Cl -0.027 7.027 22 C -0.071 4.071 23 C 0.100 3.900 24 N -0.481 5.481 25 C 0.041 3.959 26 H 0.273 0.727 27 H 0.354 0.646 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.211 0.789 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.263 -10.772 -11.894 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.178 4.178 3 Si 0.746 3.254 4 H -0.178 1.178 5 H -0.147 1.147 6 H -0.211 1.211 7 C -0.586 4.586 8 H 0.064 0.936 9 C 0.151 3.849 10 O -0.363 6.363 11 C -0.128 4.128 12 N -0.140 5.140 13 C 0.012 3.988 14 C -0.068 4.068 15 N -0.124 5.124 16 C -0.072 4.072 17 C -0.061 4.061 18 C -0.056 4.056 19 Cl 0.005 6.995 20 C -0.037 4.037 21 Cl 0.002 6.998 22 C -0.091 4.091 23 C -0.026 4.026 24 N -0.200 5.200 25 C -0.087 4.087 26 H 0.082 0.918 27 H 0.206 0.794 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.228 0.772 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.109 0.891 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.011 -11.470 -11.773 21.598 hybrid contribution -1.455 0.606 -0.088 1.578 sum 12.556 -10.864 -11.861 20.405 Atomic orbital electron populations 1.70024 1.08231 1.28836 1.49427 1.25945 0.95712 1.03313 0.92867 0.86287 0.80193 0.78652 0.80296 1.17797 1.14685 1.21109 1.21468 0.90285 0.94218 1.52654 0.93597 1.20482 0.90507 0.89042 0.84888 1.86480 1.67036 1.24462 1.58328 1.25083 0.91537 0.95631 1.00581 1.66008 1.34025 1.07445 1.06545 1.22188 0.92258 0.91449 0.92942 1.24130 0.94228 1.00696 0.87789 1.68699 1.19874 1.00953 1.22851 1.19528 0.97324 0.94208 0.96125 1.20708 0.98457 0.89289 0.97646 1.20357 0.99522 0.93368 0.92334 1.98411 1.95163 1.58640 1.47294 1.20412 0.97330 0.90332 0.95663 1.98416 1.77222 1.25973 1.98166 1.20665 0.99728 0.90139 0.98603 1.19472 0.96558 0.94794 0.91738 1.68706 1.21761 1.04100 1.25436 1.23993 0.92317 0.96578 0.95849 0.91781 0.79363 0.90658 0.87155 0.77249 0.80271 0.82032 0.89052 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.94 13.96 21.45 0.30 -53.64 16 2 C 0.02 1.19 5.47 84.66 0.46 1.65 16 3 Si 0.92 37.80 24.34 68.60 1.67 39.47 16 4 H -0.25 -9.82 7.06 99.48 0.70 -9.11 16 5 H -0.22 -7.94 5.27 99.48 0.52 -7.42 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -29.35 9.20 25.60 0.24 -29.11 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 9 C 0.19 8.48 1.05 -10.89 -0.01 8.47 16 10 O -0.55 -24.21 13.32 -148.98 -1.98 -26.19 16 11 C 0.00 -0.06 6.47 86.41 0.56 0.50 16 12 N -0.42 -14.76 6.24 -715.01 -4.47 -19.22 16 13 C 0.26 8.32 5.89 133.67 0.79 9.11 16 14 C 0.11 2.89 11.07 85.38 0.95 3.84 16 15 N -0.41 -10.66 10.45 -187.49 -1.96 -12.62 16 16 C 0.05 1.34 6.59 40.23 0.27 1.61 16 17 C -0.04 -0.83 9.72 22.35 0.22 -0.62 16 18 C -0.03 -0.52 6.28 22.12 0.14 -0.38 16 19 Cl -0.02 -0.41 27.87 -2.72 -0.08 -0.48 16 20 C -0.01 -0.17 6.28 22.12 0.14 -0.03 16 21 Cl -0.03 -0.52 27.87 -2.72 -0.08 -0.60 16 22 C -0.07 -1.77 9.72 22.35 0.22 -1.55 16 23 C 0.10 2.91 6.59 40.23 0.27 3.17 16 24 N -0.48 -16.08 8.31 -185.65 -1.54 -17.62 16 25 C 0.04 1.62 7.04 86.41 0.61 2.23 16 26 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 27 H 0.35 14.54 3.32 -74.06 -0.25 14.29 16 28 H 0.08 2.91 7.86 -2.39 -0.02 2.90 16 29 H 0.11 3.64 6.97 -2.38 -0.02 3.62 16 30 H 0.21 4.09 8.06 -2.91 -0.02 4.06 16 31 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.09 3.54 8.14 -2.39 -0.02 3.53 16 34 H 0.10 4.10 6.63 -2.38 -0.02 4.08 16 Total: -1.00 -61.20 316.61 -2.55 -63.75 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.75 Total: 28.26 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.83 Total: -1.10 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -7.67 Total: -103.10 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.98 Total: -26.19 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.67 Total: 39.47 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.15 Total: -1.08 kcal Total: -61.20 -2.55 -63.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302458925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.444 kcal (2) G-P(sol) polarization free energy of solvation -61.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds