Wall clock time and date at job start Tue Mar 31 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46914 * 171.92531 * 3 2 1 5 5 C 1.36941 * 119.99328 * 67.98150 * 4 3 2 6 6 H 1.08000 * 119.99457 * 210.47828 * 5 4 3 7 7 C 1.38808 * 120.00482 * 30.48074 * 5 4 3 8 8 N 1.31620 * 119.99876 * 22.75279 * 7 5 4 9 9 Si 1.86799 * 120.00088 * 202.75242 * 7 5 4 10 10 H 1.48506 * 109.46989 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47185 * 119.99624 * 9 7 5 12 12 H 1.48496 * 109.47230 * 239.99817 * 9 7 5 13 13 S 1.65594 * 120.00124 * 248.25344 * 4 3 2 14 14 O 1.42099 * 106.40460 * 23.26448 * 13 4 3 15 15 O 1.42102 * 106.40028 * 156.18761 * 13 4 3 16 16 C 1.76200 * 107.21824 * 269.72599 * 13 4 3 17 17 C 1.38528 * 122.55559 * 115.00198 * 16 13 4 18 18 C 1.33454 * 114.89536 * 179.97438 * 17 16 13 19 19 Cl 1.73599 * 125.19478 * 179.97438 * 18 17 16 20 20 S 1.75878 * 109.61028 * 359.97438 * 18 17 16 21 21 C 1.33458 * 122.55202 * 294.71299 * 16 13 4 22 22 Cl 1.73590 * 125.19719 * 359.97438 * 21 16 13 23 23 H 4.40643 * 5.51401 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.47133 * 51.93074 * 3 2 1 25 25 H 1.08998 * 109.47142 * 291.92994 * 3 2 1 26 26 H 0.97004 * 119.99720 * 179.97438 * 8 7 5 27 27 H 1.08005 * 122.55272 * 359.97438 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3684 -0.1940 5 6 2.9422 2.3086 0.7831 6 1 2.8269 3.3487 0.5164 7 6 2.8964 1.9247 2.1163 8 7 3.4605 0.7979 2.4964 9 14 2.0342 3.0073 3.3709 10 1 1.4855 4.2094 2.6934 11 1 0.9262 2.2468 4.0027 12 1 3.0049 3.4259 4.4137 13 16 3.9105 1.7793 -1.5976 14 8 3.4849 0.8450 -2.5800 15 8 3.7582 3.1845 -1.7439 16 6 5.6301 1.4886 -1.3464 17 6 6.3349 0.5285 -2.0538 18 6 7.6293 0.4382 -1.7417 19 17 8.7568 -0.6693 -2.4599 20 16 8.0184 1.6126 -0.4916 21 6 6.3539 2.1804 -0.4641 22 17 5.7455 3.4466 0.5556 23 1 -1.0502 -0.0004 0.0002 24 1 3.0097 -0.6329 -0.8090 25 1 3.0095 -0.3830 0.9533 26 1 3.4288 0.5298 3.4281 27 1 5.8722 -0.0992 -2.8011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305915968.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:49 Heat of formation + Delta-G solvation = 20.612029 kcal Electronic energy + Delta-G solvation = -20679.450640 eV Core-core repulsion = 17131.591587 eV Total energy + Delta-G solvation = -3547.859053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 338.934 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -37.76504 -36.68446 -36.33394 -36.08442 -35.72681 -34.46996 -32.46709 -31.24273 -28.88525 -26.78350 -24.12076 -23.98516 -20.15394 -18.59987 -18.38401 -17.93829 -16.90607 -16.52555 -15.98976 -15.08357 -14.58996 -14.32072 -13.96899 -13.90491 -13.52297 -13.35367 -12.92879 -12.45436 -12.22981 -11.93425 -11.79269 -11.43094 -11.25665 -10.91449 -10.85541 -10.75401 -10.67957 -10.63835 -10.60728 -10.43679 -9.93468 -9.60293 -9.48748 -9.29481 -8.61507 -8.32396 -8.16505 -6.74624 -4.25035 0.76908 0.93533 1.45199 1.82666 2.15991 2.45290 2.67291 2.98662 3.08409 3.14866 3.55918 3.71873 3.88816 4.47294 4.58839 4.91088 5.29057 5.39053 5.64055 5.84312 6.04117 6.19607 6.29447 6.68347 6.85671 6.98870 7.25177 8.09407 8.44364 8.48441 8.92971 10.16535 Molecular weight = 338.93amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.005785 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.629592 B = 4838.698366 C = 5626.036343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.139 4.139 3 C 0.212 3.788 4 N -0.790 5.790 5 C -0.216 4.216 6 H 0.117 0.883 7 C 0.042 3.958 8 N -0.812 5.812 9 Si 0.916 3.084 10 H -0.258 1.258 11 H -0.272 1.272 12 H -0.275 1.275 13 S 2.516 3.484 14 O -0.999 6.999 15 O -0.969 6.969 16 C -0.655 4.655 17 C -0.040 4.040 18 C -0.165 4.165 19 Cl -0.019 7.019 20 S 0.170 5.830 21 C -0.020 4.020 22 Cl 0.035 6.965 23 H 0.208 0.792 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.279 0.721 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -1.344 -0.164 5.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.141 4.141 3 C 0.086 3.914 4 N -0.611 5.611 5 C -0.368 4.368 6 H 0.135 0.865 7 C -0.173 4.173 8 N -0.451 5.451 9 Si 0.741 3.259 10 H -0.182 1.182 11 H -0.197 1.197 12 H -0.200 1.200 13 S 2.615 3.385 14 O -0.988 6.988 15 O -0.958 6.958 16 C -0.743 4.743 17 C -0.072 4.072 18 C -0.309 4.309 19 Cl 0.009 6.991 20 S 0.430 5.570 21 C -0.166 4.166 22 Cl 0.064 6.936 23 H 0.225 0.775 24 H 0.104 0.896 25 H 0.149 0.851 26 H 0.090 0.910 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.102 -0.818 -0.327 7.157 hybrid contribution -0.888 -0.248 0.231 0.951 sum 6.214 -1.066 -0.096 6.305 Atomic orbital electron populations 1.24568 0.95600 1.01682 1.04822 1.23609 0.94739 0.98555 0.97211 1.18563 0.83589 0.83808 1.05402 1.54046 1.54074 1.15795 1.37230 1.20020 1.38878 0.92167 0.85690 0.86517 1.25732 0.96120 0.97114 0.98364 1.69804 1.35298 1.21491 1.18483 0.85975 0.79578 0.80534 0.79846 1.18206 1.19711 1.20036 1.12682 0.73032 0.74486 0.78289 1.93327 1.80530 1.63574 1.61388 1.93381 1.84870 1.30884 1.86673 1.31275 1.32705 1.04816 1.05546 1.19689 0.90813 0.97161 0.99496 1.25200 0.95385 1.03862 1.06428 1.98336 1.59392 1.59715 1.81626 1.84099 1.07041 1.30295 1.35554 1.24948 0.96645 0.96875 0.98161 1.98458 1.85121 1.46258 1.63796 0.77523 0.89646 0.85057 0.90980 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.61 19.25 29.55 0.57 -4.04 15 2 C -0.14 -2.92 13.25 -37.12 -0.49 -3.41 15 3 C 0.21 4.52 5.61 -6.83 -0.04 4.48 15 4 N -0.79 -17.99 2.94 -62.77 -0.18 -18.18 15 5 C -0.22 -4.94 6.61 -15.06 -0.10 -5.04 15 6 H 0.12 2.74 7.34 -52.49 -0.39 2.36 15 7 C 0.04 0.92 5.04 -17.43 -0.09 0.83 15 8 N -0.81 -17.78 11.05 55.49 0.61 -17.16 15 9 Si 0.92 17.62 29.61 -169.99 -5.03 12.58 15 10 H -0.26 -4.99 7.11 56.52 0.40 -4.58 15 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 13 S 2.52 58.18 5.26 -107.50 -0.56 57.62 15 14 O -1.00 -24.27 16.01 -57.17 -0.92 -25.19 15 15 O -0.97 -24.26 15.96 -57.17 -0.91 -25.17 15 16 C -0.66 -13.48 5.84 -41.15 -0.24 -13.72 15 17 C -0.04 -0.74 9.65 -41.15 -0.40 -1.14 15 18 C -0.17 -2.72 7.09 29.06 0.21 -2.51 15 19 Cl -0.02 -0.26 29.29 -51.86 -1.52 -1.78 15 20 S 0.17 2.72 23.34 -107.50 -2.51 0.21 15 21 C -0.02 -0.38 7.05 29.06 0.20 -0.17 15 22 Cl 0.03 0.67 25.67 -51.86 -1.33 -0.66 15 23 H 0.21 2.93 7.80 -54.08 -0.42 2.51 15 24 H 0.09 1.72 7.08 -51.93 -0.37 1.35 15 25 H 0.13 2.84 5.46 -51.93 -0.28 2.56 15 26 H 0.28 5.73 8.31 -40.82 -0.34 5.39 15 27 H 0.16 2.81 7.74 -52.48 -0.41 2.40 15 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -26.37 303.56 -9.16 -35.52 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -1.00 Total: 2.35 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -0.37 Total: -24.72 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.43 Total: -35.34 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.83 Total: -50.35 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 60.90 SS G_CDS: -3.07 Total: 57.83 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -2.85 Total: -2.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.37 -9.16 -35.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305915968.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.136 kcal (2) G-P(sol) polarization free energy of solvation -26.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds