Wall clock time and date at job start Tue Mar 31 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46914 * 171.92531 * 3 2 1 5 5 C 1.36941 * 119.99328 * 67.98150 * 4 3 2 6 6 H 1.08000 * 119.99457 * 210.47828 * 5 4 3 7 7 C 1.38808 * 120.00482 * 30.48074 * 5 4 3 8 8 N 1.31620 * 119.99876 * 22.75279 * 7 5 4 9 9 Si 1.86799 * 120.00088 * 202.75242 * 7 5 4 10 10 H 1.48506 * 109.46989 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47185 * 119.99624 * 9 7 5 12 12 H 1.48496 * 109.47230 * 239.99817 * 9 7 5 13 13 S 1.65594 * 120.00124 * 248.25344 * 4 3 2 14 14 O 1.42099 * 106.40460 * 23.26448 * 13 4 3 15 15 O 1.42102 * 106.40028 * 156.18761 * 13 4 3 16 16 C 1.76200 * 107.21824 * 269.72599 * 13 4 3 17 17 C 1.38528 * 122.55559 * 115.00198 * 16 13 4 18 18 C 1.33454 * 114.89536 * 179.97438 * 17 16 13 19 19 Cl 1.73599 * 125.19478 * 179.97438 * 18 17 16 20 20 S 1.75878 * 109.61028 * 359.97438 * 18 17 16 21 21 C 1.33458 * 122.55202 * 294.71299 * 16 13 4 22 22 Cl 1.73590 * 125.19719 * 359.97438 * 21 16 13 23 23 H 4.40643 * 5.51401 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.47133 * 51.93074 * 3 2 1 25 25 H 1.08998 * 109.47142 * 291.92994 * 3 2 1 26 26 H 0.97004 * 119.99720 * 179.97438 * 8 7 5 27 27 H 1.08005 * 122.55272 * 359.97438 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3684 -0.1940 5 6 2.9422 2.3086 0.7831 6 1 2.8269 3.3487 0.5164 7 6 2.8964 1.9247 2.1163 8 7 3.4605 0.7979 2.4964 9 14 2.0342 3.0073 3.3709 10 1 1.4855 4.2094 2.6934 11 1 0.9262 2.2468 4.0027 12 1 3.0049 3.4259 4.4137 13 16 3.9105 1.7793 -1.5976 14 8 3.4849 0.8450 -2.5800 15 8 3.7582 3.1845 -1.7439 16 6 5.6301 1.4886 -1.3464 17 6 6.3349 0.5285 -2.0538 18 6 7.6293 0.4382 -1.7417 19 17 8.7568 -0.6693 -2.4599 20 16 8.0184 1.6126 -0.4916 21 6 6.3539 2.1804 -0.4641 22 17 5.7455 3.4466 0.5556 23 1 -1.0502 -0.0004 0.0002 24 1 3.0097 -0.6329 -0.8090 25 1 3.0095 -0.3830 0.9533 26 1 3.4288 0.5298 3.4281 27 1 5.8722 -0.0992 -2.8011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305915968.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:49 Heat of formation + Delta-G solvation = 5.581756 kcal Electronic energy + Delta-G solvation = -20680.102401 eV Core-core repulsion = 17131.591587 eV Total energy + Delta-G solvation = -3548.510815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 338.934 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.17938 -38.07650 -37.99064 -37.70199 -37.30778 -36.31462 -34.09426 -32.87370 -30.31605 -28.43932 -25.67298 -25.57646 -21.65162 -20.26847 -19.84227 -19.53500 -18.56036 -18.14458 -17.58252 -16.74883 -16.23178 -15.82013 -15.41715 -15.38003 -15.12848 -14.93556 -14.40442 -14.11225 -13.59752 -13.56155 -13.16705 -13.12220 -12.91179 -12.65446 -12.57098 -12.44596 -12.21324 -12.13943 -12.03107 -11.94407 -11.55395 -11.16205 -11.12895 -10.86287 -10.00316 -9.83312 -9.70659 -8.42102 -5.98577 -0.68325 -0.45556 -0.18013 0.37761 0.79831 0.97374 1.24739 1.45953 1.53251 1.63143 1.98446 2.17684 2.30496 2.80737 2.88449 3.20857 3.79650 3.84668 4.13200 4.39058 4.45082 4.62535 4.83256 5.13970 5.21445 5.34687 5.58327 6.37209 6.73749 6.94477 7.21934 8.49791 Molecular weight = 338.93amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.005785 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.629592 B = 4838.698366 C = 5626.036343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C 0.213 3.787 4 N -0.794 5.794 5 C -0.225 4.225 6 H 0.104 0.896 7 C 0.023 3.977 8 N -0.821 5.821 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.267 1.267 12 H -0.267 1.267 13 S 2.511 3.489 14 O -1.021 7.021 15 O -0.998 6.998 16 C -0.672 4.672 17 C -0.061 4.061 18 C -0.161 4.161 19 Cl 0.010 6.990 20 S 0.246 5.754 21 C -0.046 4.046 22 Cl 0.026 6.974 23 H 0.250 0.750 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.287 0.713 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 -1.798 0.839 6.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.200 4.200 3 C 0.088 3.912 4 N -0.615 5.615 5 C -0.378 4.378 6 H 0.122 0.878 7 C -0.191 4.191 8 N -0.459 5.459 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.192 1.192 12 H -0.192 1.192 13 S 2.615 3.385 14 O -1.011 7.011 15 O -0.988 6.988 16 C -0.764 4.764 17 C -0.092 4.092 18 C -0.306 4.306 19 Cl 0.039 6.961 20 S 0.507 5.493 21 C -0.193 4.193 22 Cl 0.055 6.945 23 H 0.266 0.734 24 H 0.104 0.896 25 H 0.144 0.856 26 H 0.098 0.902 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.559 -1.289 0.656 7.696 hybrid contribution -0.929 -0.179 -0.067 0.949 sum 6.630 -1.468 0.589 6.816 Atomic orbital electron populations 1.25557 0.96521 0.99022 1.02150 1.23852 0.95419 1.01042 0.99697 1.18513 0.84497 0.83104 1.05051 1.54063 1.54035 1.16297 1.37128 1.20005 1.39556 0.91879 0.86327 0.87807 1.26218 0.96078 0.97901 0.98940 1.69831 1.35030 1.21819 1.19206 0.85327 0.78966 0.79239 0.78208 1.18565 1.19196 1.19202 1.12880 0.73677 0.73613 0.78360 1.93271 1.81482 1.63789 1.62534 1.93321 1.85805 1.32491 1.87174 1.30963 1.32096 1.06362 1.07000 1.19672 0.91675 0.97604 1.00283 1.25393 0.95395 1.03827 1.05955 1.98351 1.57996 1.58622 1.81137 1.83805 1.03297 1.28377 1.33867 1.25237 0.98888 0.97002 0.98181 1.98444 1.85654 1.46550 1.63895 0.73392 0.89601 0.85633 0.90242 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.54 19.25 74.32 1.43 -6.11 15 2 C -0.20 -8.26 13.25 31.12 0.41 -7.84 15 3 C 0.21 9.28 5.61 84.57 0.47 9.75 15 4 N -0.79 -36.90 2.94 -352.51 -1.04 -37.94 15 5 C -0.22 -10.40 6.61 84.03 0.56 -9.85 15 6 H 0.10 5.00 7.34 -2.91 -0.02 4.98 15 7 C 0.02 1.01 5.04 84.86 0.43 1.44 15 8 N -0.82 -35.42 11.05 21.65 0.24 -35.18 15 9 Si 0.96 35.02 29.61 68.60 2.03 37.05 15 10 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 11 H -0.27 -9.52 7.11 99.48 0.71 -8.81 15 12 H -0.27 -9.38 7.11 99.48 0.71 -8.68 15 13 S 2.51 119.61 5.26 -56.49 -0.30 119.31 15 14 O -1.02 -51.26 16.01 -128.00 -2.05 -53.31 15 15 O -1.00 -51.73 15.96 -128.00 -2.04 -53.78 15 16 C -0.67 -27.96 5.84 21.26 0.12 -27.84 15 17 C -0.06 -2.26 9.65 21.25 0.21 -2.05 15 18 C -0.16 -5.06 7.09 66.74 0.47 -4.59 15 19 Cl 0.01 0.26 29.29 -2.72 -0.08 0.18 15 20 S 0.25 7.39 23.34 -56.49 -1.32 6.08 15 21 C -0.05 -1.78 7.05 66.74 0.47 -1.31 15 22 Cl 0.03 1.00 25.67 -2.72 -0.07 0.93 15 23 H 0.25 6.10 7.80 -4.41 -0.03 6.06 15 24 H 0.09 3.59 7.08 -2.39 -0.02 3.58 15 25 H 0.13 5.52 5.46 -2.39 -0.01 5.50 15 26 H 0.29 11.43 8.31 -92.71 -0.77 10.66 15 27 H 0.16 5.75 7.74 -2.91 -0.02 5.73 15 Total: -1.00 -56.17 303.56 1.19 -54.98 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.24 Total: 10.07 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 4.57 Total: -48.40 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -0.80 Total: -73.12 kcal Atomic # 8 Polarization: -102.99 SS G_CDS: -4.09 Total: -107.08 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: 127.00 SS G_CDS: -1.62 Total: 125.39 kcal Atomic # 17 Polarization: 1.26 SS G_CDS: -0.15 Total: 1.11 kcal Total: -56.17 1.19 -54.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305915968.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.560 kcal (2) G-P(sol) polarization free energy of solvation -56.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds