Wall clock time and date at job start Tue Mar 31 2020 22:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47345 * 17.82036 * 3 2 1 5 5 C 1.36935 * 119.99771 * 273.27716 * 4 3 2 6 6 H 1.07996 * 119.99739 * 186.82084 * 5 4 3 7 7 C 1.38818 * 119.99800 * 6.83145 * 5 4 3 8 8 N 1.31613 * 120.00108 * 25.20135 * 7 5 4 9 9 Si 1.86798 * 119.99431 * 205.20680 * 7 5 4 10 10 H 1.48499 * 109.47186 * 89.99853 * 9 7 5 11 11 H 1.48503 * 109.46838 * 209.99736 * 9 7 5 12 12 H 1.48503 * 109.47465 * 329.99481 * 9 7 5 13 13 S 1.65598 * 120.00105 * 93.27886 * 4 3 2 14 14 O 1.42093 * 106.40136 * 156.45984 * 13 4 3 15 15 O 1.42105 * 106.40337 * 23.54241 * 13 4 3 16 16 C 1.76202 * 107.21974 * 270.00133 * 13 4 3 17 17 C 1.35210 * 126.41851 * 270.00563 * 16 13 4 18 18 Cl 1.73599 * 125.70093 * 359.97438 * 17 16 13 19 19 N 1.33551 * 108.60617 * 179.97438 * 17 16 13 20 20 C 1.32598 * 109.16467 * 359.97438 * 19 17 16 21 21 C 1.40910 * 132.30130 * 180.02562 * 20 19 17 22 22 C 1.36047 * 119.33081 * 179.97438 * 21 20 19 23 23 C 1.40454 * 119.68775 * 359.97438 * 22 21 20 24 24 C 1.34971 * 120.29532 * 359.97438 * 23 22 21 25 25 N 1.36470 * 120.60925 * 0.04004 * 24 23 22 26 26 H 4.40647 * 5.51302 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47445 * 257.81846 * 3 2 1 28 28 H 1.09005 * 109.47199 * 137.81922 * 3 2 1 29 29 H 0.97008 * 119.99737 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.33863 * 359.97438 * 21 20 19 31 31 H 1.07993 * 120.15758 * 180.25278 * 22 21 20 32 32 H 1.08001 * 119.85807 * 180.02562 * 23 22 21 33 33 H 1.07999 * 119.69617 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3141 -0.4227 5 6 3.2997 -2.3124 0.5000 6 1 3.7626 -3.2442 0.2106 7 6 2.8715 -2.1267 1.8074 8 7 1.9063 -1.2708 2.0684 9 14 3.6655 -3.0914 3.1960 10 1 4.8229 -2.3294 3.7296 11 1 2.6729 -3.3071 4.2794 12 1 4.1315 -4.4048 2.6831 13 16 3.4885 -1.5929 -2.0163 14 8 4.4141 -2.6708 -2.0393 15 8 3.7589 -0.3237 -2.5954 16 6 2.0159 -2.1853 -2.7814 17 6 1.6302 -3.4768 -2.8878 18 17 2.5089 -4.8491 -2.2892 19 7 0.4602 -3.5206 -3.5303 20 6 0.0862 -2.2862 -3.8380 21 6 -1.0460 -1.7767 -4.5045 22 6 -1.1669 -0.4332 -4.6810 23 6 -0.1654 0.4248 -4.1978 24 6 0.9128 -0.0781 -3.5604 25 7 1.0465 -1.4238 -3.3770 26 1 -1.0498 -0.0002 -0.0003 27 1 3.0093 0.2177 1.0044 28 1 3.0090 0.7624 -0.6901 29 1 1.6074 -1.1408 2.9821 30 1 -1.8101 -2.4459 -4.8715 31 1 -2.0310 -0.0279 -5.1863 32 1 -0.2587 1.4919 -4.3360 33 1 1.6770 0.5905 -3.1924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312162424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:05 Heat of formation + Delta-G solvation = 92.238936 kcal Electronic energy + Delta-G solvation = -25635.776599 eV Core-core repulsion = 21818.829346 eV Total energy + Delta-G solvation = -3816.947253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43064 -37.32664 -36.52668 -36.02125 -35.82664 -34.47909 -33.39100 -32.24635 -31.32005 -29.94220 -28.54502 -26.78748 -24.02485 -23.62684 -22.65883 -21.64535 -18.79227 -18.41653 -17.76961 -16.87097 -16.74716 -16.57597 -15.94314 -15.65788 -15.17712 -14.79768 -14.64140 -14.31751 -13.96555 -13.50099 -13.46083 -12.61835 -12.41158 -12.34557 -12.02429 -11.97593 -11.43021 -11.14377 -10.99625 -10.94581 -10.87199 -10.75171 -10.65565 -10.55234 -10.51845 -10.41277 -9.90709 -9.64357 -9.39745 -9.03927 -8.52738 -8.42705 -7.81066 -6.82908 -4.12022 0.89552 1.22758 1.55228 2.16519 2.83245 3.00416 3.01628 3.06701 3.12411 3.63279 3.67746 3.85520 3.99418 4.38660 4.46146 4.52732 4.79917 4.86283 5.03607 5.05846 5.18747 5.41159 5.61982 5.70494 5.95776 6.10203 6.19391 6.21594 6.48103 6.55049 6.61484 6.81938 6.97012 7.05875 7.20745 7.87351 7.97870 8.32526 8.73089 8.77812 10.06545 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.006328 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.411762 B = 4424.012908 C = 5127.934851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.117 4.117 3 C 0.229 3.771 4 N -0.773 5.773 5 C -0.213 4.213 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.800 5.800 9 Si 0.936 3.064 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.259 1.259 13 S 2.495 3.505 14 O -0.961 6.961 15 O -1.003 7.003 16 C -0.573 4.573 17 C 0.186 3.814 18 Cl 0.020 6.980 19 N -0.500 5.500 20 C 0.243 3.757 21 C -0.095 4.095 22 C -0.088 4.088 23 C -0.159 4.159 24 C 0.085 3.915 25 N -0.303 5.303 26 H 0.195 0.805 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.281 0.719 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 4.141 -4.366 7.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.119 4.119 3 C 0.104 3.896 4 N -0.593 5.593 5 C -0.366 4.366 6 H 0.149 0.851 7 C -0.189 4.189 8 N -0.439 5.439 9 Si 0.760 3.240 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.183 1.183 13 S 2.590 3.410 14 O -0.950 6.950 15 O -0.992 6.992 16 C -0.758 4.758 17 C 0.023 3.977 18 Cl 0.049 6.951 19 N -0.222 5.222 20 C -0.001 4.001 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.180 4.180 24 C -0.039 4.039 25 N 0.027 4.973 26 H 0.212 0.788 27 H 0.136 0.864 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.567 3.540 -5.181 7.761 hybrid contribution -0.645 -0.320 0.834 1.102 sum -5.212 3.220 -4.346 7.512 Atomic orbital electron populations 1.24186 0.95265 1.02773 1.05640 1.23331 0.94479 0.97963 0.96150 1.18617 0.83942 0.84565 1.02475 1.56202 1.69095 1.14529 1.19455 1.20541 1.28093 1.00732 0.87279 0.85146 1.25808 0.95104 0.97860 1.00117 1.70234 1.20204 1.31240 1.22217 0.85735 0.79033 0.80252 0.79014 1.19298 1.20429 1.18288 1.14844 0.78719 0.73191 0.74225 1.93385 1.60929 1.54581 1.86076 1.93264 1.85868 1.41848 1.78232 1.35887 1.20350 0.98255 1.21332 1.20552 0.91764 0.87751 0.97612 1.98398 1.71329 1.40464 1.84909 1.70358 1.12859 1.19076 1.19950 1.21057 0.93156 0.85117 1.00748 1.20183 0.95285 0.95802 1.00250 1.21039 0.99043 0.92405 0.98698 1.20788 0.93899 1.01335 1.01962 1.22148 1.00569 0.82356 0.98832 1.42244 1.15012 1.06203 1.33802 0.78810 0.86354 0.89997 0.90778 0.83347 0.83991 0.82960 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.45 11.24 -37.12 -0.42 -2.86 16 3 C 0.23 4.78 5.45 -6.83 -0.04 4.75 16 4 N -0.77 -17.63 2.88 -62.77 -0.18 -17.81 16 5 C -0.21 -4.95 9.48 -15.06 -0.14 -5.10 16 6 H 0.13 3.06 7.22 -52.49 -0.38 2.68 16 7 C 0.03 0.58 4.92 -17.43 -0.09 0.49 16 8 N -0.80 -17.79 8.96 55.49 0.50 -17.30 16 9 Si 0.94 17.44 29.62 -169.99 -5.04 12.40 16 10 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 11 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 12 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 13 S 2.50 58.45 5.75 -107.50 -0.62 57.84 16 14 O -0.96 -24.13 15.09 -57.17 -0.86 -24.99 16 15 O -1.00 -23.55 14.84 -57.17 -0.85 -24.39 16 16 C -0.57 -13.08 7.09 -16.37 -0.12 -13.19 16 17 C 0.19 4.26 7.65 -17.88 -0.14 4.13 16 18 Cl 0.02 0.44 27.59 -51.86 -1.43 -0.99 16 19 N -0.50 -10.98 11.32 -9.92 -0.11 -11.09 16 20 C 0.24 4.76 7.81 -156.03 -1.22 3.55 16 21 C -0.09 -1.37 10.11 -39.36 -0.40 -1.77 16 22 C -0.09 -1.02 10.07 -39.53 -0.40 -1.41 16 23 C -0.16 -2.01 9.99 -39.91 -0.40 -2.41 16 24 C 0.09 1.44 10.55 -16.65 -0.18 1.27 16 25 N -0.30 -6.16 2.95 -61.73 -0.18 -6.34 16 26 H 0.19 3.27 7.80 -54.10 -0.42 2.85 16 27 H 0.12 2.45 6.42 -51.93 -0.33 2.12 16 28 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 29 H 0.28 5.88 8.31 -40.82 -0.34 5.54 16 30 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.18 2.99 6.69 -52.49 -0.35 2.64 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -29.65 321.48 -9.13 -38.78 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.25 Total: 6.19 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.95 Total: -17.14 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.02 Total: -52.54 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -1.71 Total: -49.39 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.04 Total: 12.40 kcal Atomic # 16 Polarization: 58.45 SS G_CDS: -0.62 Total: 57.84 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.43 Total: -0.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.65 -9.13 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312162424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.021 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds