Wall clock time and date at job start Tue Mar 31 2020 22:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47345 * 17.82036 * 3 2 1 5 5 C 1.36935 * 119.99771 * 273.27716 * 4 3 2 6 6 H 1.07996 * 119.99739 * 186.82084 * 5 4 3 7 7 C 1.38818 * 119.99800 * 6.83145 * 5 4 3 8 8 N 1.31613 * 120.00108 * 25.20135 * 7 5 4 9 9 Si 1.86798 * 119.99431 * 205.20680 * 7 5 4 10 10 H 1.48499 * 109.47186 * 89.99853 * 9 7 5 11 11 H 1.48503 * 109.46838 * 209.99736 * 9 7 5 12 12 H 1.48503 * 109.47465 * 329.99481 * 9 7 5 13 13 S 1.65598 * 120.00105 * 93.27886 * 4 3 2 14 14 O 1.42093 * 106.40136 * 156.45984 * 13 4 3 15 15 O 1.42105 * 106.40337 * 23.54241 * 13 4 3 16 16 C 1.76202 * 107.21974 * 270.00133 * 13 4 3 17 17 C 1.35210 * 126.41851 * 270.00563 * 16 13 4 18 18 Cl 1.73599 * 125.70093 * 359.97438 * 17 16 13 19 19 N 1.33551 * 108.60617 * 179.97438 * 17 16 13 20 20 C 1.32598 * 109.16467 * 359.97438 * 19 17 16 21 21 C 1.40910 * 132.30130 * 180.02562 * 20 19 17 22 22 C 1.36047 * 119.33081 * 179.97438 * 21 20 19 23 23 C 1.40454 * 119.68775 * 359.97438 * 22 21 20 24 24 C 1.34971 * 120.29532 * 359.97438 * 23 22 21 25 25 N 1.36470 * 120.60925 * 0.04004 * 24 23 22 26 26 H 4.40647 * 5.51302 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47445 * 257.81846 * 3 2 1 28 28 H 1.09005 * 109.47199 * 137.81922 * 3 2 1 29 29 H 0.97008 * 119.99737 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.33863 * 359.97438 * 21 20 19 31 31 H 1.07993 * 120.15758 * 180.25278 * 22 21 20 32 32 H 1.08001 * 119.85807 * 180.02562 * 23 22 21 33 33 H 1.07999 * 119.69617 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3141 -0.4227 5 6 3.2997 -2.3124 0.5000 6 1 3.7626 -3.2442 0.2106 7 6 2.8715 -2.1267 1.8074 8 7 1.9063 -1.2708 2.0684 9 14 3.6655 -3.0914 3.1960 10 1 4.8229 -2.3294 3.7296 11 1 2.6729 -3.3071 4.2794 12 1 4.1315 -4.4048 2.6831 13 16 3.4885 -1.5929 -2.0163 14 8 4.4141 -2.6708 -2.0393 15 8 3.7589 -0.3237 -2.5954 16 6 2.0159 -2.1853 -2.7814 17 6 1.6302 -3.4768 -2.8878 18 17 2.5089 -4.8491 -2.2892 19 7 0.4602 -3.5206 -3.5303 20 6 0.0862 -2.2862 -3.8380 21 6 -1.0460 -1.7767 -4.5045 22 6 -1.1669 -0.4332 -4.6810 23 6 -0.1654 0.4248 -4.1978 24 6 0.9128 -0.0781 -3.5604 25 7 1.0465 -1.4238 -3.3770 26 1 -1.0498 -0.0002 -0.0003 27 1 3.0093 0.2177 1.0044 28 1 3.0090 0.7624 -0.6901 29 1 1.6074 -1.1408 2.9821 30 1 -1.8101 -2.4459 -4.8715 31 1 -2.0310 -0.0279 -5.1863 32 1 -0.2587 1.4919 -4.3360 33 1 1.6770 0.5905 -3.1924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312162424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:04 Heat of formation + Delta-G solvation = 74.058799 kcal Electronic energy + Delta-G solvation = -25636.564949 eV Core-core repulsion = 21818.829346 eV Total energy + Delta-G solvation = -3817.735603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.84011 -38.68741 -38.20871 -37.67889 -37.52459 -36.32816 -34.70625 -33.91466 -32.97202 -31.23717 -29.93778 -28.45216 -25.72966 -24.87282 -23.99872 -23.16155 -20.46036 -19.99169 -19.35148 -18.53115 -18.27994 -17.97999 -17.31075 -17.13731 -16.61481 -16.47300 -16.17249 -15.69894 -15.36843 -15.19987 -15.06403 -14.27399 -13.85930 -13.64970 -13.44905 -13.20687 -13.16532 -12.74974 -12.69743 -12.59184 -12.34979 -12.31275 -12.25351 -12.16101 -12.08478 -11.98652 -11.55259 -11.26124 -11.01010 -10.65273 -10.20156 -9.87458 -9.17702 -8.51323 -5.88390 -0.35426 -0.23650 0.02339 0.57524 1.33491 1.49544 1.55124 1.62166 1.65726 2.01693 2.29041 2.40270 2.44311 2.72196 2.80540 3.16375 3.21428 3.56500 3.62283 3.87873 3.95220 4.05466 4.25590 4.47524 4.54274 4.68614 4.88855 5.03189 5.07791 5.15480 5.17053 5.32196 5.42665 5.46986 5.87959 6.25069 6.39359 6.57946 7.04235 7.16351 8.38014 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.006328 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.411762 B = 4424.012908 C = 5127.934851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.143 4.143 3 C 0.228 3.772 4 N -0.777 5.777 5 C -0.236 4.236 6 H 0.119 0.881 7 C 0.003 3.997 8 N -0.811 5.811 9 Si 0.991 3.009 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.264 1.264 13 S 2.500 3.500 14 O -0.989 6.989 15 O -1.014 7.014 16 C -0.608 4.608 17 C 0.167 3.833 18 Cl 0.014 6.986 19 N -0.532 5.532 20 C 0.231 3.769 21 C -0.110 4.110 22 C -0.054 4.054 23 C -0.124 4.124 24 C 0.036 3.964 25 N -0.307 5.307 26 H 0.222 0.778 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.287 0.713 30 H 0.176 0.824 31 H 0.202 0.798 32 H 0.201 0.799 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 6.017 -4.910 10.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.146 4.146 3 C 0.104 3.896 4 N -0.597 5.597 5 C -0.390 4.390 6 H 0.136 0.864 7 C -0.211 4.211 8 N -0.449 5.449 9 Si 0.812 3.188 10 H -0.183 1.183 11 H -0.198 1.198 12 H -0.188 1.188 13 S 2.597 3.403 14 O -0.978 6.978 15 O -1.003 7.003 16 C -0.795 4.795 17 C 0.004 3.996 18 Cl 0.042 6.958 19 N -0.255 5.255 20 C -0.013 4.013 21 C -0.130 4.130 22 C -0.078 4.078 23 C -0.144 4.144 24 C -0.088 4.088 25 N 0.025 4.975 26 H 0.239 0.761 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.194 0.806 31 H 0.219 0.781 32 H 0.218 0.782 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.317 5.465 -5.730 10.781 hybrid contribution -0.004 -0.728 0.868 1.132 sum -7.321 4.737 -4.862 9.984 Atomic orbital electron populations 1.24838 0.96016 1.01557 1.04539 1.23465 0.94856 0.99070 0.97180 1.18649 0.84499 0.84004 1.02462 1.56183 1.69541 1.14984 1.18961 1.20624 1.29303 1.00948 0.88107 0.86364 1.26457 0.95103 0.98466 1.01110 1.70285 1.20315 1.31357 1.22933 0.84940 0.78511 0.78894 0.76462 1.18319 1.19776 1.18841 1.14746 0.78550 0.72526 0.74446 1.93325 1.62354 1.55487 1.86626 1.93218 1.86299 1.42139 1.78667 1.35475 1.21359 0.98728 1.23971 1.20724 0.92544 0.87843 0.98494 1.98370 1.71611 1.40712 1.85087 1.70291 1.12924 1.20881 1.21421 1.21906 0.94182 0.84515 1.00657 1.20759 0.94271 0.97820 1.00189 1.21758 0.99591 0.90764 0.95691 1.21544 0.91441 1.03890 0.97482 1.22538 1.02890 0.81170 1.02165 1.42296 1.14456 1.07254 1.33531 0.76148 0.86598 0.89086 0.90206 0.80638 0.78062 0.78178 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.56 19.25 74.32 1.43 -8.13 16 2 C -0.14 -5.97 11.24 31.12 0.35 -5.62 16 3 C 0.23 9.73 5.45 84.57 0.46 10.19 16 4 N -0.78 -36.66 2.88 -352.51 -1.02 -37.67 16 5 C -0.24 -11.34 9.48 84.04 0.80 -10.54 16 6 H 0.12 5.85 7.22 -2.91 -0.02 5.83 16 7 C 0.00 0.12 4.92 84.86 0.42 0.54 16 8 N -0.81 -35.88 8.96 21.65 0.19 -35.69 16 9 Si 0.99 35.58 29.62 68.60 2.03 37.61 16 10 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 11 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 S 2.50 122.29 5.75 -56.49 -0.32 121.97 16 14 O -0.99 -52.43 15.09 -128.00 -1.93 -54.36 16 15 O -1.01 -49.38 14.84 -128.00 -1.90 -51.28 16 16 C -0.61 -28.69 7.09 83.20 0.59 -28.10 16 17 C 0.17 8.00 7.65 83.73 0.64 8.64 16 18 Cl 0.01 0.62 27.59 -2.72 -0.08 0.55 16 19 N -0.53 -23.81 11.32 -185.29 -2.10 -25.90 16 20 C 0.23 8.85 7.81 134.09 1.05 9.90 16 21 C -0.11 -2.78 10.11 22.41 0.23 -2.56 16 22 C -0.05 -0.92 10.07 22.30 0.22 -0.70 16 23 C -0.12 -2.51 9.99 22.06 0.22 -2.29 16 24 C 0.04 1.16 10.55 83.22 0.88 2.03 16 25 N -0.31 -12.41 2.95 -349.22 -1.03 -13.44 16 26 H 0.22 6.84 7.80 -4.43 -0.03 6.81 16 27 H 0.12 4.90 6.42 -2.39 -0.02 4.89 16 28 H 0.09 3.59 6.95 -2.38 -0.02 3.58 16 29 H 0.29 11.79 8.31 -92.70 -0.77 11.02 16 30 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.17 5.60 6.69 -2.91 -0.02 5.58 16 Total: -1.00 -68.74 321.48 2.31 -66.43 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.17 Total: 18.44 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 7.28 Total: -26.65 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.95 Total: -112.71 kcal Atomic # 8 Polarization: -101.81 SS G_CDS: -3.83 Total: -105.64 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 16 Polarization: 122.29 SS G_CDS: -0.32 Total: 121.97 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.08 Total: 0.55 kcal Total: -68.74 2.31 -66.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312162424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.485 kcal (2) G-P(sol) polarization free energy of solvation -68.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds