Wall clock time and date at job start Tue Mar 31 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00602 * 2 1 4 4 H 1.48502 * 109.47296 * 275.35695 * 3 2 1 5 5 H 1.48504 * 109.46884 * 35.35825 * 3 2 1 6 6 H 1.48499 * 109.47283 * 155.35598 * 3 2 1 7 7 C 1.39934 * 119.99416 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00317 * 343.45482 * 7 2 1 9 9 C 1.41412 * 119.99618 * 163.44823 * 7 2 1 10 10 C 1.40786 * 120.21119 * 331.95527 * 9 7 2 11 11 C 1.37639 * 119.89240 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32919 * 359.74316 * 11 10 9 13 13 C 1.39297 * 120.42360 * 0.51491 * 12 11 10 14 14 N 1.39682 * 119.95293 * 179.76695 * 13 12 11 15 15 S 1.65601 * 119.99901 * 314.52832 * 14 13 12 16 16 O 1.42098 * 106.40395 * 181.89255 * 15 14 13 17 17 O 1.42101 * 106.40105 * 48.97321 * 15 14 13 18 18 C 1.76199 * 107.21900 * 295.43420 * 15 14 13 19 19 C 1.38592 * 120.78568 * 87.69812 * 18 15 14 20 20 N 1.32326 * 119.12235 * 179.70266 * 19 18 15 21 21 C 1.31924 * 120.80404 * 0.27361 * 20 19 18 22 22 Cl 1.73596 * 119.14094 * 180.02562 * 21 20 19 23 23 N 1.31929 * 121.71653 * 359.97438 * 21 20 19 24 24 C 1.32323 * 120.80232 * 0.02562 * 23 21 20 25 25 C 1.38317 * 120.09361 * 359.48386 * 13 12 11 26 26 H 0.97010 * 119.99349 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.04874 * 0.02562 * 10 9 7 28 28 H 1.08010 * 119.83513 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.78991 * 180.27883 * 12 11 10 30 30 H 0.96997 * 120.00386 * 134.53562 * 14 13 12 31 31 H 1.08004 * 120.44099 * 359.97427 * 19 18 15 32 32 H 1.07999 * 120.43501 * 179.97438 * 24 23 21 33 33 H 1.07998 * 120.16297 * 180.23133 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3768 2.1117 -1.3940 5 1 1.5011 2.6173 0.8102 6 1 3.5919 1.4099 0.5838 7 6 2.0078 -1.2119 0.0005 8 1 1.5013 -2.1277 0.2673 9 6 3.3779 -1.2375 -0.3483 10 6 3.9040 -0.2694 -1.2248 11 6 5.2385 -0.3008 -1.5604 12 6 6.0689 -1.2776 -1.0358 13 6 5.5615 -2.2451 -0.1716 14 7 6.4067 -3.2284 0.3479 15 16 7.4707 -4.0158 -0.6473 16 8 8.1439 -4.9714 0.1606 17 8 8.1475 -3.0093 -1.3878 18 6 6.5161 -4.9322 -1.8108 19 6 6.0933 -4.3511 -2.9959 20 7 5.3830 -5.0715 -3.8488 21 6 5.0726 -6.3251 -3.5796 22 17 4.1393 -7.2306 -4.7297 23 7 5.4537 -6.9089 -2.4596 24 6 6.1664 -6.2497 -1.5604 25 6 4.2232 -2.2301 0.1775 26 1 -0.4850 0.8402 -0.0004 27 1 3.2614 0.4965 -1.6331 28 1 5.6412 0.4426 -2.2325 29 1 7.1156 -1.2913 -1.3014 30 1 6.3705 -3.4502 1.2914 31 1 6.3440 -3.3253 -3.2223 32 1 6.4749 -6.7333 -0.6454 33 1 3.8295 -2.9775 0.8503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313454598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:11 Heat of formation + Delta-G solvation = -1.543152 kcal Electronic energy + Delta-G solvation = -24207.549929 eV Core-core repulsion = 20386.535979 eV Total energy + Delta-G solvation = -3821.013950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36336 -38.48752 -37.34191 -37.30148 -36.03140 -35.00854 -34.31231 -33.30766 -32.51748 -30.48449 -28.46744 -25.38344 -25.21742 -25.10385 -21.78656 -21.12453 -19.71789 -18.56885 -18.40885 -18.15805 -17.67369 -17.33928 -16.15744 -15.78418 -15.60121 -14.95977 -14.68880 -14.65758 -14.10019 -14.06049 -13.21559 -12.97987 -12.88934 -12.63084 -12.39883 -12.39030 -12.27643 -12.14665 -11.83600 -11.51813 -11.36585 -11.17205 -11.07895 -10.86024 -10.83143 -10.31757 -10.22501 -9.85574 -9.84553 -9.64579 -9.27000 -7.91690 -7.57374 -7.10060 -4.68129 -0.18836 0.22818 0.59781 1.00285 2.33986 2.42749 2.77814 3.01204 3.10137 3.13213 3.21847 3.51015 3.56780 3.85462 4.00002 4.13975 4.18608 4.28745 4.72346 5.15902 5.18103 5.55008 5.62069 5.92961 6.19774 6.20893 6.32298 6.47594 6.61351 6.81057 7.01606 7.24285 7.29740 7.43677 7.49337 7.67523 7.91150 8.17349 8.43478 8.61780 9.91606 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.004321 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.481673 B = 6478.099819 C = 8022.854822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.241 1.241 7 C -0.441 4.441 8 H 0.091 0.909 9 C 0.101 3.899 10 C -0.240 4.240 11 C -0.059 4.059 12 C -0.275 4.275 13 C 0.155 3.845 14 N -1.045 6.045 15 S 2.708 3.292 16 O -0.957 6.957 17 O -0.935 6.935 18 C -0.793 4.793 19 C 0.282 3.718 20 N -0.513 5.513 21 C 0.407 3.593 22 Cl 0.038 6.962 23 N -0.519 5.519 24 C 0.268 3.732 25 C -0.215 4.215 26 H 0.288 0.712 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.423 0.577 31 H 0.199 0.801 32 H 0.196 0.804 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.862 -8.100 -3.194 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.164 1.164 7 C -0.469 4.469 8 H 0.109 0.891 9 C 0.097 3.903 10 C -0.259 4.259 11 C -0.078 4.078 12 C -0.297 4.297 13 C 0.061 3.939 14 N -0.798 5.798 15 S 2.793 3.207 16 O -0.947 6.947 17 O -0.925 6.925 18 C -0.880 4.880 19 C 0.115 3.885 20 N -0.230 5.230 21 C 0.115 3.885 22 Cl 0.066 6.934 23 N -0.237 5.237 24 C 0.100 3.900 25 C -0.238 4.238 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.151 0.849 30 H 0.260 0.740 31 H 0.216 0.784 32 H 0.212 0.788 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.869 -8.648 -4.122 13.754 hybrid contribution -0.382 0.724 0.579 1.003 sum 9.486 -7.924 -3.543 12.858 Atomic orbital electron populations 1.69677 1.08177 1.30574 1.34098 1.26214 0.94801 1.01966 0.90757 0.86268 0.81318 0.79383 0.78882 1.19555 1.21901 1.16378 1.19517 0.92453 0.96024 1.38924 0.89120 1.17560 0.92927 0.90506 0.89266 1.21132 0.95718 1.04090 1.04999 1.20505 0.93303 0.96485 0.97530 1.21058 1.00692 0.99349 1.08603 1.17218 0.89197 0.89233 0.98227 1.52939 1.56746 1.49018 1.21136 1.01942 0.72769 0.73058 0.72927 1.93589 1.70910 1.62526 1.67655 1.93588 1.69955 1.56296 1.72671 1.32979 1.24947 1.11537 1.18565 1.23216 0.81496 0.99063 0.84680 1.68126 1.14804 1.05940 1.34119 1.23467 0.89209 0.87433 0.88428 1.98464 1.68198 1.71597 1.55099 1.68073 1.14020 1.38984 1.02582 1.23065 0.83149 0.88078 0.95666 1.20922 0.90933 1.04740 1.07254 0.90184 0.88011 0.87871 0.84909 0.74036 0.78434 0.78759 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 13.93 55.55 0.77 -19.58 16 2 C 0.08 2.04 5.43 -17.35 -0.09 1.95 16 3 Si 0.91 19.56 24.42 -169.99 -4.15 15.41 16 4 H -0.27 -5.58 6.71 56.52 0.38 -5.21 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.24 -5.22 6.69 56.52 0.38 -4.84 16 7 C -0.44 -11.13 9.59 -37.74 -0.36 -11.49 16 8 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.10 2.35 5.17 -106.85 -0.55 1.80 16 10 C -0.24 -5.27 7.06 -38.84 -0.27 -5.54 16 11 C -0.06 -1.15 10.01 -39.70 -0.40 -1.55 16 12 C -0.27 -5.06 9.19 -39.08 -0.36 -5.42 16 13 C 0.15 2.77 6.19 -83.86 -0.52 2.25 16 14 N -1.04 -14.45 5.76 32.37 0.19 -14.26 16 15 S 2.71 35.45 5.68 -107.50 -0.61 34.84 16 16 O -0.96 -13.10 17.33 -57.17 -0.99 -14.09 16 17 O -0.94 -14.09 14.39 -57.17 -0.82 -14.91 16 18 C -0.79 -10.31 5.93 -39.32 -0.23 -10.54 16 19 C 0.28 3.94 10.80 -17.21 -0.19 3.75 16 20 N -0.51 -7.66 10.41 -11.63 -0.12 -7.78 16 21 C 0.41 5.81 8.18 -91.93 -0.75 5.06 16 22 Cl 0.04 0.46 29.27 -51.86 -1.52 -1.05 16 23 N -0.52 -7.11 10.41 -11.64 -0.12 -7.24 16 24 C 0.27 3.27 10.80 -17.21 -0.19 3.08 16 25 C -0.22 -4.39 9.71 -38.67 -0.38 -4.77 16 26 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 27 H 0.10 2.25 4.36 -52.49 -0.23 2.02 16 28 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.13 2.30 5.59 -52.48 -0.29 2.00 16 30 H 0.42 4.74 8.95 -34.47 -0.31 4.43 16 31 H 0.20 2.48 7.77 -52.48 -0.41 2.08 16 32 H 0.20 1.72 7.68 -52.49 -0.40 1.32 16 33 H 0.11 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -29.03 317.00 -8.98 -38.01 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.09 Total: 7.30 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -4.29 Total: -21.43 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.72 Total: -48.85 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.81 Total: -29.01 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.15 Total: 15.41 kcal Atomic # 16 Polarization: 35.45 SS G_CDS: -0.61 Total: 34.84 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.52 Total: -1.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.03 -8.98 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313454598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.467 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds