Wall clock time and date at job start Tue Mar 31 2020 22:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00602 * 2 1 4 4 H 1.48502 * 109.47296 * 275.35695 * 3 2 1 5 5 H 1.48504 * 109.46884 * 35.35825 * 3 2 1 6 6 H 1.48499 * 109.47283 * 155.35598 * 3 2 1 7 7 C 1.39934 * 119.99416 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00317 * 343.45482 * 7 2 1 9 9 C 1.41412 * 119.99618 * 163.44823 * 7 2 1 10 10 C 1.40786 * 120.21119 * 331.95527 * 9 7 2 11 11 C 1.37639 * 119.89240 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32919 * 359.74316 * 11 10 9 13 13 C 1.39297 * 120.42360 * 0.51491 * 12 11 10 14 14 N 1.39682 * 119.95293 * 179.76695 * 13 12 11 15 15 S 1.65601 * 119.99901 * 314.52832 * 14 13 12 16 16 O 1.42098 * 106.40395 * 181.89255 * 15 14 13 17 17 O 1.42101 * 106.40105 * 48.97321 * 15 14 13 18 18 C 1.76199 * 107.21900 * 295.43420 * 15 14 13 19 19 C 1.38592 * 120.78568 * 87.69812 * 18 15 14 20 20 N 1.32326 * 119.12235 * 179.70266 * 19 18 15 21 21 C 1.31924 * 120.80404 * 0.27361 * 20 19 18 22 22 Cl 1.73596 * 119.14094 * 180.02562 * 21 20 19 23 23 N 1.31929 * 121.71653 * 359.97438 * 21 20 19 24 24 C 1.32323 * 120.80232 * 0.02562 * 23 21 20 25 25 C 1.38317 * 120.09361 * 359.48386 * 13 12 11 26 26 H 0.97010 * 119.99349 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.04874 * 0.02562 * 10 9 7 28 28 H 1.08010 * 119.83513 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.78991 * 180.27883 * 12 11 10 30 30 H 0.96997 * 120.00386 * 134.53562 * 14 13 12 31 31 H 1.08004 * 120.44099 * 359.97427 * 19 18 15 32 32 H 1.07999 * 120.43501 * 179.97438 * 24 23 21 33 33 H 1.07998 * 120.16297 * 180.23133 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3768 2.1117 -1.3940 5 1 1.5011 2.6173 0.8102 6 1 3.5919 1.4099 0.5838 7 6 2.0078 -1.2119 0.0005 8 1 1.5013 -2.1277 0.2673 9 6 3.3779 -1.2375 -0.3483 10 6 3.9040 -0.2694 -1.2248 11 6 5.2385 -0.3008 -1.5604 12 6 6.0689 -1.2776 -1.0358 13 6 5.5615 -2.2451 -0.1716 14 7 6.4067 -3.2284 0.3479 15 16 7.4707 -4.0158 -0.6473 16 8 8.1439 -4.9714 0.1606 17 8 8.1475 -3.0093 -1.3878 18 6 6.5161 -4.9322 -1.8108 19 6 6.0933 -4.3511 -2.9959 20 7 5.3830 -5.0715 -3.8488 21 6 5.0726 -6.3251 -3.5796 22 17 4.1393 -7.2306 -4.7297 23 7 5.4537 -6.9089 -2.4596 24 6 6.1664 -6.2497 -1.5604 25 6 4.2232 -2.2301 0.1775 26 1 -0.4850 0.8402 -0.0004 27 1 3.2614 0.4965 -1.6331 28 1 5.6412 0.4426 -2.2325 29 1 7.1156 -1.2913 -1.3014 30 1 6.3705 -3.4502 1.2914 31 1 6.3440 -3.3253 -3.2223 32 1 6.4749 -6.7333 -0.6454 33 1 3.8295 -2.9775 0.8503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313454598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:10 Heat of formation + Delta-G solvation = -22.153018 kcal Electronic energy + Delta-G solvation = -24208.443640 eV Core-core repulsion = 20386.535979 eV Total energy + Delta-G solvation = -3821.907661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40537 -40.03139 -38.51173 -38.30417 -37.17676 -36.50535 -35.36476 -34.97490 -33.56344 -32.16125 -29.99374 -27.07181 -26.29346 -26.16601 -23.32360 -22.72350 -20.90155 -19.86009 -19.51015 -19.38603 -18.87785 -18.51677 -17.76410 -17.24754 -16.70974 -16.41332 -16.11182 -15.68874 -15.65521 -15.09470 -14.71462 -14.46772 -14.23499 -14.05744 -13.72546 -13.66833 -13.41235 -13.38896 -12.97395 -12.81761 -12.80970 -12.62509 -12.44548 -12.41626 -12.12942 -11.77523 -11.57363 -11.33405 -11.22524 -10.91986 -10.90973 -9.58407 -9.11754 -8.90435 -6.53903 -1.25801 -0.87684 -0.42420 -0.01687 0.73896 0.78709 1.29895 1.44611 1.52579 1.65296 2.02978 2.12758 2.44995 2.54046 2.56998 2.94733 3.10472 3.22564 3.44539 3.63914 4.16813 4.22232 4.38676 4.61882 4.62175 4.70579 4.93203 5.04260 5.17685 5.30264 5.39962 5.71752 5.82381 5.91761 6.05913 6.23672 6.24811 6.39478 6.70219 6.81255 8.17507 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.004321 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.481673 B = 6478.099819 C = 8022.854822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.046 3.954 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.480 4.480 8 H 0.055 0.945 9 C 0.085 3.915 10 C -0.255 4.255 11 C -0.060 4.060 12 C -0.258 4.258 13 C 0.172 3.828 14 N -1.040 6.040 15 S 2.735 3.265 16 O -0.954 6.954 17 O -0.949 6.949 18 C -0.794 4.794 19 C 0.270 3.730 20 N -0.532 5.532 21 C 0.394 3.606 22 Cl 0.051 6.949 23 N -0.528 5.528 24 C 0.268 3.732 25 C -0.224 4.224 26 H 0.294 0.706 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.436 0.564 31 H 0.209 0.791 32 H 0.229 0.771 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.813 -8.091 -3.334 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.274 4.274 11 C -0.078 4.078 12 C -0.280 4.280 13 C 0.077 3.923 14 N -0.794 5.794 15 S 2.820 3.180 16 O -0.944 6.944 17 O -0.939 6.939 18 C -0.882 4.882 19 C 0.104 3.896 20 N -0.249 5.249 21 C 0.103 3.897 22 Cl 0.079 6.921 23 N -0.245 5.245 24 C 0.102 3.898 25 C -0.247 4.247 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.171 0.829 30 H 0.276 0.724 31 H 0.226 0.774 32 H 0.245 0.755 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.833 -8.652 -4.244 16.049 hybrid contribution -1.043 0.507 0.571 1.292 sum 11.791 -8.145 -3.673 14.794 Atomic orbital electron populations 1.69720 1.09331 1.31532 1.36999 1.26870 0.95331 1.04411 0.90243 0.85479 0.79878 0.76194 0.79410 1.18323 1.21151 1.16706 1.19485 0.93953 0.95319 1.42152 0.92645 1.17704 0.92423 0.91913 0.89844 1.21237 0.96996 1.03966 1.05247 1.20885 0.92241 0.97246 0.97449 1.21455 1.01502 0.98125 1.06941 1.17106 0.88591 0.89495 0.97147 1.52896 1.55737 1.48379 1.22398 1.01131 0.71991 0.72534 0.72317 1.93598 1.70679 1.62376 1.67778 1.93559 1.70293 1.57093 1.72936 1.32941 1.25142 1.11950 1.18211 1.23496 0.81440 0.99645 0.85008 1.68139 1.15562 1.06400 1.34793 1.23760 0.89385 0.87597 0.89001 1.98464 1.67784 1.71191 1.54656 1.68164 1.14482 1.39164 1.02685 1.23692 0.82020 0.87875 0.96261 1.21050 0.91943 1.04285 1.07423 0.89596 0.88436 0.84585 0.82855 0.72410 0.77415 0.75520 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.21 13.93 21.82 0.30 -44.90 16 2 C 0.05 2.37 5.43 85.25 0.46 2.83 16 3 Si 0.97 40.49 24.42 68.60 1.68 42.17 16 4 H -0.26 -10.18 6.71 99.48 0.67 -9.51 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.24 -10.17 6.69 99.48 0.67 -9.51 16 7 C -0.48 -25.37 9.59 23.46 0.23 -25.14 16 8 H 0.06 3.18 8.06 -2.91 -0.02 3.16 16 9 C 0.08 3.93 5.17 -21.30 -0.11 3.82 16 10 C -0.25 -10.86 7.06 22.75 0.16 -10.70 16 11 C -0.06 -2.12 10.01 22.20 0.22 -1.90 16 12 C -0.26 -8.56 9.19 22.59 0.21 -8.35 16 13 C 0.17 5.65 6.19 38.16 0.24 5.89 16 14 N -1.04 -25.30 5.76 -51.49 -0.30 -25.60 16 15 S 2.73 62.04 5.68 -56.49 -0.32 61.72 16 16 O -0.95 -22.48 17.33 -128.00 -2.22 -24.70 16 17 O -0.95 -24.98 14.39 -128.00 -1.84 -26.83 16 18 C -0.79 -18.55 5.93 22.44 0.13 -18.41 16 19 C 0.27 7.00 10.80 84.70 0.92 7.92 16 20 N -0.53 -15.19 10.41 -190.72 -1.98 -17.18 16 21 C 0.39 10.80 8.18 180.80 1.48 12.28 16 22 Cl 0.05 1.19 29.27 -2.72 -0.08 1.11 16 23 N -0.53 -13.50 10.41 -190.73 -1.98 -15.49 16 24 C 0.27 5.84 10.80 84.70 0.91 6.76 16 25 C -0.22 -8.94 9.71 22.86 0.22 -8.72 16 26 H 0.29 14.06 8.30 -92.70 -0.77 13.29 16 27 H 0.10 4.21 4.36 -2.91 -0.01 4.20 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.15 4.57 5.59 -2.91 -0.02 4.55 16 30 H 0.44 8.32 8.95 -96.75 -0.87 7.46 16 31 H 0.21 4.73 7.77 -2.91 -0.02 4.70 16 32 H 0.23 3.21 7.68 -2.91 -0.02 3.19 16 33 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -63.08 317.00 -1.42 -64.50 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.26 Total: 18.93 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 5.07 Total: -33.74 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.96 Total: -103.16 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -4.06 Total: -51.53 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.68 Total: 42.17 kcal Atomic # 16 Polarization: 62.04 SS G_CDS: -0.32 Total: 61.72 kcal Atomic # 17 Polarization: 1.19 SS G_CDS: -0.08 Total: 1.11 kcal Total: -63.08 -1.42 -64.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313454598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.348 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds