Wall clock time and date at job start Tue Mar 31 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.72952 * 2 1 4 4 C 1.54942 * 110.66773 * 236.90599 * 2 1 3 5 5 C 1.54597 * 102.92077 * 204.15127 * 4 2 1 6 6 C 1.53997 * 105.14187 * 21.95650 * 5 4 2 7 7 H 1.09002 * 109.91735 * 241.87566 * 6 5 4 8 8 C 1.52998 * 109.91607 * 120.57830 * 6 5 4 9 9 N 1.47903 * 107.05406 * 1.22599 * 6 5 4 10 10 C 1.46904 * 110.99843 * 214.15520 * 9 6 5 11 11 C 1.53003 * 109.46999 * 64.38021 * 10 9 6 12 12 N 1.46905 * 109.46880 * 183.00091 * 11 10 9 13 13 C 1.46895 * 110.99688 * 169.99922 * 12 11 10 14 14 C 1.53240 * 109.34032 * 172.74185 * 13 12 11 15 15 N 1.47090 * 108.68005 * 53.73531 * 14 13 12 16 16 C 1.37337 * 120.88033 * 128.91643 * 15 14 13 17 17 O 1.35091 * 119.99984 * 359.97438 * 16 15 14 18 18 N 1.30100 * 119.99600 * 180.02562 * 16 15 14 19 19 C 1.46510 * 119.99620 * 185.24156 * 18 16 15 20 20 C 1.50695 * 109.46866 * 114.70153 * 19 18 16 21 21 H 1.07996 * 120.00660 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99833 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00365 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99837 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47275 * 89.99924 * 24 22 20 26 26 H 1.48503 * 109.46979 * 209.99967 * 24 22 20 27 27 H 1.48499 * 109.47125 * 329.99575 * 24 22 20 28 28 C 1.47148 * 118.19136 * 309.15222 * 15 14 13 29 29 C 1.46898 * 111.00228 * 45.69941 * 12 11 10 30 30 H 1.09001 * 109.47421 * 302.15481 * 1 2 3 31 31 H 1.08999 * 109.47373 * 62.16207 * 1 2 3 32 32 H 1.09004 * 109.46796 * 182.15658 * 1 2 3 33 33 H 1.08994 * 110.72378 * 85.79348 * 4 2 1 34 34 H 1.08998 * 110.87471 * 322.57759 * 4 2 1 35 35 H 1.08998 * 110.30907 * 263.04070 * 5 4 2 36 36 H 1.08997 * 110.39565 * 140.91651 * 5 4 2 37 37 H 1.09004 * 109.47300 * 302.40913 * 8 6 5 38 38 H 1.08991 * 109.47445 * 62.41256 * 8 6 5 39 39 H 1.09006 * 109.47002 * 182.41305 * 8 6 5 40 40 H 1.09000 * 109.47231 * 304.38282 * 10 9 6 41 41 H 1.09002 * 109.47094 * 184.38213 * 10 9 6 42 42 H 1.08995 * 109.46829 * 63.00011 * 11 10 9 43 43 H 1.09001 * 109.47172 * 302.99851 * 11 10 9 44 44 H 1.09010 * 109.49344 * 52.78893 * 13 12 11 45 45 H 1.08996 * 109.51888 * 292.71840 * 13 12 11 46 46 H 1.09001 * 109.63253 * 173.53889 * 14 13 12 47 47 H 1.09001 * 109.63015 * 293.92984 * 14 13 12 48 48 H 0.96696 * 114.00227 * 84.99222 * 17 16 15 49 49 H 1.08998 * 109.46442 * 234.70304 * 19 18 16 50 50 H 1.08995 * 109.46965 * 354.70535 * 19 18 16 51 51 H 0.97002 * 120.00342 * 180.02562 * 23 22 20 52 52 H 1.08996 * 109.46274 * 291.14062 * 28 15 14 53 53 H 1.08994 * 109.80297 * 170.74560 * 28 15 14 54 54 H 1.09000 * 109.49139 * 307.21000 * 29 12 11 55 55 H 1.09004 * 109.49392 * 67.26696 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4853 -1.2197 -0.7423 6 6 3.4279 -1.1648 0.7956 7 1 4.1440 -0.4322 1.1680 8 6 3.7377 -2.5451 1.3783 9 7 2.0542 -0.7589 1.1642 10 6 2.0579 0.0719 2.3757 11 6 2.7993 1.3804 2.0944 12 7 2.8655 2.1799 3.3251 13 6 3.7681 3.3270 3.1596 14 6 3.6710 4.2313 4.3930 15 7 3.9136 3.4175 5.5940 16 6 4.8366 3.8059 6.5339 17 8 5.5362 4.9486 6.3617 18 7 5.0378 3.0727 7.5897 19 6 5.9364 3.5424 8.6472 20 6 5.1463 3.7826 9.9077 21 1 4.0814 3.6030 9.9201 22 6 5.7830 4.2306 11.0456 23 7 5.0937 4.4398 12.1458 24 14 7.6250 4.5406 11.0244 25 1 7.8858 5.9467 10.6246 26 1 8.1831 4.2996 12.3793 27 1 8.2704 3.6218 10.0526 28 6 3.1445 2.1738 5.7581 29 6 3.2623 1.3507 4.4709 30 1 -0.3634 0.5469 0.8700 31 1 -0.3634 0.4799 -0.9087 32 1 -0.3633 -1.0270 0.0387 33 1 2.1430 -0.1513 -2.0941 34 1 1.4571 -1.6643 -1.4202 35 1 4.2373 -0.5258 -1.1178 36 1 3.7062 -2.2333 -1.0767 37 1 3.0296 -3.2736 0.9833 38 1 4.7509 -2.8369 1.1025 39 1 3.6531 -2.5082 2.4645 40 1 2.5592 -0.4636 3.1820 41 1 1.0313 0.2916 2.6687 42 1 2.2680 1.9408 1.3252 43 1 3.8095 1.1590 1.7502 44 1 3.4809 3.8907 2.2719 45 1 4.7925 2.9715 3.0490 46 1 4.4198 5.0207 4.3282 47 1 2.6761 4.6736 4.4453 48 1 5.0782 5.7410 6.6738 49 1 6.7009 2.7886 8.8355 50 1 6.4118 4.4717 8.3338 51 1 5.5416 4.7554 12.9463 52 1 2.0980 2.4157 5.9435 53 1 3.5421 1.6016 6.5962 54 1 2.6084 0.4810 4.5342 55 1 4.2936 1.0218 4.3421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331169385.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:05 Heat of formation + Delta-G solvation = -13.284749 kcal Electronic energy + Delta-G solvation = -30529.224911 eV Core-core repulsion = 26601.123906 eV Total energy + Delta-G solvation = -3928.101004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.13245 -40.44065 -39.02433 -36.08345 -35.67145 -34.15709 -33.55148 -33.23508 -32.11773 -30.25328 -29.35215 -28.61091 -26.48542 -25.06382 -24.78825 -24.31416 -23.26088 -21.99093 -21.40093 -20.74501 -19.96135 -19.16888 -18.89839 -17.69908 -17.18494 -16.87583 -16.30916 -16.19686 -16.16819 -16.02962 -15.56175 -15.48379 -15.30334 -15.19799 -14.64943 -14.52657 -14.24650 -14.02215 -13.89111 -13.55926 -13.48056 -13.23493 -13.05232 -12.86637 -12.84552 -12.73363 -12.57796 -12.49696 -12.37977 -12.34447 -12.23875 -12.03838 -11.89390 -11.74598 -11.70249 -11.53480 -11.50709 -11.24203 -11.10132 -10.86942 -10.14066 -9.44859 -9.30129 -8.67501 -8.33262 -6.37826 1.31716 1.34686 1.47073 1.49045 1.90606 2.31703 2.72790 2.99523 3.07350 3.41617 3.63116 3.73503 3.81595 3.86786 3.99626 4.03478 4.05858 4.21231 4.24762 4.29717 4.36161 4.38532 4.44455 4.48412 4.57690 4.61756 4.66718 4.72706 4.73458 4.74827 4.85299 4.88827 4.89730 4.96313 4.97070 5.00324 5.04529 5.05336 5.08670 5.13966 5.20833 5.24814 5.30872 5.38911 5.47452 5.52292 5.83864 5.91212 5.97143 6.04751 6.11354 6.18683 6.35877 6.64016 6.73926 7.22804 7.61446 8.83413 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002067 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.604871 B =13543.462965 C =13836.811630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.050 3.950 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.126 4.126 6 C 0.052 3.948 7 H 0.046 0.954 8 C -0.132 4.132 9 N -0.510 5.510 10 C 0.046 3.954 11 C 0.028 3.972 12 N -0.531 5.531 13 C 0.048 3.952 14 C 0.127 3.873 15 N -0.609 5.609 16 C 0.535 3.465 17 O -0.532 6.532 18 N -0.613 5.613 19 C 0.182 3.818 20 C -0.520 4.520 21 H 0.026 0.974 22 C 0.010 3.990 23 N -0.945 5.945 24 Si 0.955 3.045 25 H -0.260 1.260 26 H -0.277 1.277 27 H -0.259 1.259 28 C 0.141 3.859 29 C 0.047 3.953 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.029 0.971 44 H 0.108 0.892 45 H 0.023 0.977 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.411 0.589 49 H 0.018 0.982 50 H 0.008 0.992 51 H 0.269 0.731 52 H 0.071 0.929 53 H 0.076 0.924 54 H 0.106 0.894 55 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 -7.277 -32.932 34.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 H 0.079 0.921 4 C -0.154 4.154 5 C -0.165 4.165 6 C -0.056 4.056 7 H 0.064 0.936 8 C -0.190 4.190 9 N -0.234 5.234 10 C -0.082 4.082 11 C -0.101 4.101 12 N -0.257 5.257 13 C -0.081 4.081 14 C 0.004 3.996 15 N -0.340 5.340 16 C 0.221 3.779 17 O -0.336 6.336 18 N -0.355 5.355 19 C 0.053 3.947 20 C -0.559 4.559 21 H 0.045 0.955 22 C -0.188 4.188 23 N -0.586 5.586 24 Si 0.778 3.222 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.183 1.183 28 C 0.019 3.981 29 C -0.082 4.082 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.126 0.874 45 H 0.042 0.958 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.271 0.729 49 H 0.036 0.964 50 H 0.026 0.974 51 H 0.078 0.922 52 H 0.089 0.911 53 H 0.095 0.905 54 H 0.123 0.877 55 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.058 -8.520 -32.438 34.273 hybrid contribution 2.061 1.621 0.674 2.707 sum -4.997 -6.899 -31.764 32.886 Atomic orbital electron populations 1.21627 0.93278 1.02138 1.01877 1.22953 0.96462 0.96244 0.90091 0.92081 1.22525 0.95577 1.00223 0.97059 1.22464 0.97829 1.02626 0.93533 1.22473 0.89899 0.97277 0.95954 0.93592 1.21717 1.01153 0.95790 1.00291 1.64982 1.18630 1.36597 1.03186 1.22417 1.01485 0.90927 0.93419 1.22806 0.99246 0.95691 0.92325 1.62036 1.50500 1.09348 1.03767 1.22485 0.93950 0.92787 0.98843 1.21760 1.02618 0.93232 0.81983 1.46567 1.39335 1.26260 1.21887 1.20402 0.86269 0.83578 0.87692 1.84704 1.45642 1.17715 1.85565 1.72221 1.26144 1.34571 1.02579 1.19515 0.91995 0.93905 0.89292 1.21219 0.94994 1.44196 0.95481 0.95530 1.25879 1.03877 0.94521 0.94489 1.70045 1.38491 1.47535 1.02511 0.85605 0.78945 0.79721 0.77968 1.18433 1.20177 1.18273 1.21525 0.95177 0.84036 0.97394 1.22560 0.98884 0.96424 0.90319 0.93066 0.91156 0.92492 0.90012 0.90824 0.91248 0.90383 0.92096 0.91865 0.93712 0.90906 0.89647 0.89327 0.95299 0.87391 0.95832 0.88759 0.90034 0.72857 0.96420 0.97388 0.92166 0.91109 0.90516 0.87655 0.96042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.46 71.98 0.68 -0.79 16 2 C 0.05 0.60 2.69 45.26 0.12 0.72 16 3 H 0.06 0.73 5.47 -2.39 -0.01 0.72 16 4 C -0.12 -1.17 6.50 31.80 0.21 -0.97 16 5 C -0.13 -1.40 6.57 31.47 0.21 -1.19 16 6 C 0.05 0.74 2.86 45.06 0.13 0.87 16 7 H 0.05 0.74 5.75 -2.39 -0.01 0.73 16 8 C -0.13 -1.89 9.32 71.98 0.67 -1.22 16 9 N -0.51 -7.56 4.86 -833.48 -4.05 -11.61 16 10 C 0.05 0.72 4.71 86.30 0.41 1.13 16 11 C 0.03 0.44 4.49 86.30 0.39 0.82 16 12 N -0.53 -10.03 4.78 -895.24 -4.28 -14.31 16 13 C 0.05 0.88 5.58 86.38 0.48 1.37 16 14 C 0.13 2.70 6.63 86.35 0.57 3.27 16 15 N -0.61 -18.44 3.09 -818.04 -2.53 -20.97 16 16 C 0.53 20.68 8.36 179.63 1.50 22.18 16 17 O -0.53 -18.13 10.71 -83.66 -0.90 -19.02 16 18 N -0.61 -29.56 9.16 -469.72 -4.30 -33.86 16 19 C 0.18 9.78 5.16 85.63 0.44 10.22 16 20 C -0.52 -32.31 9.94 25.60 0.25 -32.05 16 21 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 22 C 0.01 0.60 5.47 84.65 0.46 1.07 16 23 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 24 Si 0.95 45.99 27.47 68.60 1.88 47.87 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 28 C 0.14 4.08 6.60 86.34 0.57 4.65 16 29 C 0.05 1.06 5.05 86.38 0.44 1.49 16 30 H 0.05 0.63 7.73 -2.39 -0.02 0.61 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.78 8.06 -2.39 -0.02 0.76 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.79 7.69 -2.39 -0.02 0.78 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 1.27 5.97 -2.39 -0.01 1.26 16 41 H 0.09 1.40 7.72 -2.39 -0.02 1.38 16 42 H 0.09 1.24 6.12 -2.39 -0.01 1.22 16 43 H 0.03 0.50 6.06 -2.39 -0.01 0.48 16 44 H 0.11 1.43 8.11 -2.38 -0.02 1.41 16 45 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.09 1.85 7.03 -2.39 -0.02 1.84 16 47 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.41 10.94 9.06 -74.06 -0.67 10.27 16 49 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 50 H 0.01 0.42 6.17 -2.39 -0.01 0.41 16 51 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 52 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.08 2.70 6.99 -2.39 -0.02 2.68 16 54 H 0.11 2.06 5.66 -2.39 -0.01 2.05 16 55 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -75.09 410.88 -6.20 -81.29 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.14 Total: 19.41 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.53 Total: 11.59 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -14.86 Total: -141.13 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.90 Total: -19.02 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Total: -75.09 -6.20 -81.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331169385.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.000 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds