Wall clock time and date at job start Tue Mar 31 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.87744 * 2 1 4 4 C 1.54325 * 109.89135 * 238.97540 * 2 1 3 5 5 C 1.55137 * 103.01730 * 218.30905 * 4 2 1 6 6 C 1.54913 * 101.65818 * 35.64842 * 5 4 2 7 7 H 1.08998 * 110.37274 * 81.86921 * 6 5 4 8 8 C 1.52998 * 110.37415 * 204.10108 * 6 5 4 9 9 N 1.47438 * 109.89161 * 121.20020 * 2 1 3 10 10 C 1.46898 * 110.99909 * 356.15107 * 9 2 1 11 11 C 1.53011 * 109.47021 * 175.81179 * 10 9 2 12 12 N 1.46898 * 109.47021 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99972 * 294.30309 * 12 11 10 14 14 C 1.53239 * 109.34047 * 172.74902 * 13 12 11 15 15 N 1.47086 * 108.52156 * 53.82630 * 14 13 12 16 16 C 1.37339 * 120.88055 * 128.79914 * 15 14 13 17 17 O 1.35089 * 119.99866 * 180.02562 * 16 15 14 18 18 N 1.30095 * 120.00003 * 0.02562 * 16 15 14 19 19 C 1.46502 * 120.00160 * 174.82801 * 18 16 15 20 20 C 1.50692 * 109.47182 * 116.15964 * 19 18 16 21 21 H 1.08000 * 120.00227 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99674 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00384 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99602 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47361 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46986 * 120.00342 * 24 22 20 27 27 H 1.48501 * 109.47051 * 239.99895 * 24 22 20 28 28 C 1.47077 * 118.23646 * 308.81181 * 15 14 13 29 29 C 1.46899 * 110.99909 * 169.99605 * 12 11 10 30 30 H 1.09003 * 109.46650 * 176.21849 * 1 2 3 31 31 H 1.09000 * 109.47235 * 296.21614 * 1 2 3 32 32 H 1.08997 * 109.47266 * 56.22070 * 1 2 3 33 33 H 1.09001 * 110.69694 * 336.68785 * 4 2 1 34 34 H 1.08994 * 110.70628 * 99.92227 * 4 2 1 35 35 H 1.09004 * 110.98966 * 153.73951 * 5 4 2 36 36 H 1.09003 * 110.98899 * 277.55716 * 5 4 2 37 37 H 1.09000 * 109.46873 * 58.54814 * 8 6 5 38 38 H 1.08998 * 109.46826 * 178.54449 * 8 6 5 39 39 H 1.08995 * 109.47373 * 298.54254 * 8 6 5 40 40 H 1.08997 * 109.46835 * 295.80548 * 10 9 2 41 41 H 1.08996 * 109.47409 * 55.81216 * 10 9 2 42 42 H 1.09002 * 109.46901 * 299.99852 * 11 10 9 43 43 H 1.08996 * 109.46999 * 59.99786 * 11 10 9 44 44 H 1.09004 * 109.48517 * 292.70404 * 13 12 11 45 45 H 1.08995 * 109.49751 * 52.78469 * 13 12 11 46 46 H 1.08997 * 109.62629 * 294.11674 * 14 13 12 47 47 H 1.08996 * 109.62870 * 173.53597 * 14 13 12 48 48 H 0.96696 * 113.99960 * 274.99788 * 17 16 15 49 49 H 1.09001 * 109.47464 * 236.16753 * 19 18 16 50 50 H 1.09004 * 109.46869 * 356.16223 * 19 18 16 51 51 H 0.96999 * 120.00262 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.63497 * 291.48226 * 28 15 14 53 53 H 1.09001 * 109.62923 * 170.89427 * 28 15 14 54 54 H 1.08995 * 109.49148 * 307.21248 * 29 12 11 55 55 H 1.08999 * 109.48974 * 67.26906 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7479 -1.2436 5 6 3.2892 -1.5123 -0.6964 6 6 2.8190 -1.8843 0.7320 7 1 2.1957 -2.7781 0.7055 8 6 4.0238 -2.1033 1.6492 9 7 2.0316 -0.7182 1.1859 10 6 0.9240 -1.1371 2.0552 11 6 1.4736 -1.9669 3.2174 12 7 0.3659 -2.3863 4.0864 13 6 -0.2586 -1.2279 4.7392 14 6 -1.5148 -1.6842 5.4889 15 7 -1.1455 -2.7837 6.3935 16 6 -1.4922 -2.7502 7.7220 17 8 -1.1434 -3.7695 8.5370 18 7 -2.1565 -1.7368 8.1955 19 6 -2.6247 -1.7520 9.5836 20 6 -1.9467 -0.6489 10.3545 21 1 -1.2382 -0.0010 9.8599 22 6 -2.2309 -0.4668 11.6914 23 7 -3.0932 -1.2560 12.2938 24 14 -1.3908 0.9011 12.6468 25 1 -0.4721 1.6423 11.7458 26 1 -2.4160 1.8324 13.1826 27 1 -0.6172 0.3164 13.7715 28 6 -0.3949 -3.9198 5.8376 29 6 0.8172 -3.3755 5.0741 30 1 -0.3633 -1.0255 -0.0678 31 1 -0.3634 0.4540 0.9219 32 1 -0.3633 0.5714 -0.8541 33 1 1.3055 -1.4447 -1.6191 34 1 2.3513 -0.0433 -2.0205 35 1 3.4882 -2.4064 -1.2873 36 1 4.1658 -0.8652 -0.6628 37 1 4.6291 -1.1972 1.6764 38 1 3.6765 -2.3386 2.6552 39 1 4.6241 -2.9300 1.2694 40 1 0.4160 -0.2557 2.4465 41 1 0.2188 -1.7381 1.4812 42 1 1.9817 -2.8483 2.8261 43 1 2.1788 -1.3659 3.7914 44 1 0.4449 -0.7848 5.4441 45 1 -0.5328 -0.4897 3.9856 46 1 -2.2611 -2.0324 4.7749 47 1 -1.9176 -0.8533 6.0680 48 1 -1.7646 -4.5105 8.5279 49 1 -3.7039 -1.5999 9.6048 50 1 -2.3844 -2.7134 10.0376 51 1 -3.2928 -1.1281 13.2344 52 1 -1.0335 -4.4829 5.1570 53 1 -0.0573 -4.5669 6.6471 54 1 1.3232 -4.1947 4.5633 55 1 1.5060 -2.9025 5.7740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331169386.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:08 Heat of formation + Delta-G solvation = -15.496035 kcal Electronic energy + Delta-G solvation = -30464.681895 eV Core-core repulsion = 26536.485002 eV Total energy + Delta-G solvation = -3928.196893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.02868 -40.47272 -39.02850 -36.05203 -35.67173 -34.03592 -33.80149 -33.09918 -32.06774 -29.93797 -29.02881 -28.61155 -26.60446 -25.11042 -24.80389 -24.49266 -22.74046 -21.96641 -21.67798 -20.60628 -20.01772 -19.03076 -18.55710 -17.33409 -17.18257 -16.96576 -16.73816 -16.33772 -16.21574 -15.90757 -15.53506 -15.37837 -15.14916 -14.93560 -14.71269 -14.45453 -14.15101 -14.08238 -13.83470 -13.61808 -13.37159 -13.19232 -12.99992 -12.81649 -12.75209 -12.63961 -12.62953 -12.44913 -12.26555 -12.21979 -12.18944 -12.01547 -11.83726 -11.80225 -11.69875 -11.56063 -11.51678 -11.27626 -11.10292 -10.70899 -10.02788 -9.44058 -9.17379 -8.70981 -8.17680 -6.34294 1.34625 1.36647 1.49729 1.61938 1.89695 2.39902 2.65913 3.06972 3.19081 3.47180 3.68373 3.75331 3.87295 3.94905 4.00403 4.07389 4.16260 4.25709 4.30206 4.33511 4.43050 4.43893 4.47581 4.52023 4.57570 4.59225 4.66547 4.75483 4.76848 4.81424 4.86494 4.88872 4.94475 4.95577 5.00416 5.02015 5.06037 5.12720 5.17503 5.20221 5.24255 5.27553 5.37137 5.45100 5.45880 5.66652 5.88681 5.98408 6.01517 6.15612 6.17700 6.25455 6.32271 6.74918 6.82560 7.29291 7.69053 8.86920 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.002094 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.190888 B =13366.789864 C =13804.856304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.067 3.933 3 H 0.079 0.921 4 C -0.134 4.134 5 C -0.123 4.123 6 C 0.064 3.936 7 H 0.055 0.945 8 C -0.140 4.140 9 N -0.535 5.535 10 C 0.060 3.940 11 C 0.060 3.940 12 N -0.531 5.531 13 C 0.048 3.952 14 C 0.144 3.856 15 N -0.610 5.610 16 C 0.530 3.470 17 O -0.533 6.533 18 N -0.615 5.615 19 C 0.215 3.785 20 C -0.527 4.527 21 H 0.043 0.957 22 C 0.002 3.998 23 N -0.930 5.930 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.128 3.872 29 C 0.047 3.953 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.026 0.974 44 H 0.014 0.986 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.409 0.591 49 H 0.002 0.998 50 H -0.011 1.011 51 H 0.267 0.733 52 H 0.089 0.911 53 H 0.090 0.910 54 H 0.111 0.889 55 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -5.681 -30.915 33.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.041 4.041 3 H 0.097 0.903 4 C -0.173 4.173 5 C -0.161 4.161 6 C -0.043 4.043 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.261 5.261 10 C -0.068 4.068 11 C -0.067 4.067 12 N -0.256 5.256 13 C -0.081 4.081 14 C 0.021 3.979 15 N -0.342 5.342 16 C 0.216 3.784 17 O -0.337 6.337 18 N -0.357 5.357 19 C 0.086 3.914 20 C -0.565 4.565 21 H 0.062 0.938 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.796 3.204 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C 0.006 3.994 29 C -0.082 4.082 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.268 0.732 49 H 0.020 0.980 50 H 0.007 0.993 51 H 0.076 0.924 52 H 0.107 0.893 53 H 0.108 0.892 54 H 0.129 0.871 55 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.286 -4.578 -30.766 33.443 hybrid contribution 0.006 -0.373 1.542 1.587 sum 12.292 -4.952 -29.224 32.088 Atomic orbital electron populations 1.22315 0.95323 1.02091 1.02614 1.22421 0.94276 0.98497 0.88910 0.90315 1.22862 0.97635 0.99493 0.97285 1.22743 0.98014 1.00744 0.94576 1.22615 0.94921 0.92056 0.94749 0.92720 1.21893 0.97003 1.01655 0.99242 1.63659 1.21934 1.23449 1.17017 1.22205 0.92758 0.98363 0.93461 1.22285 0.91462 0.99246 0.93738 1.61978 1.30040 1.12811 1.20815 1.22485 0.95593 0.93053 0.96945 1.21518 0.96071 0.89411 0.90912 1.46559 1.60902 1.23655 1.03066 1.20434 0.89863 0.85036 0.83096 1.84807 1.54179 1.31807 1.62891 1.72193 1.20488 1.25069 1.17906 1.19003 0.93603 0.95369 0.83410 1.21424 1.24598 1.15525 0.94954 0.93824 1.25928 0.96010 0.99246 0.98421 1.70065 1.35257 1.39960 1.11721 0.85307 0.78437 0.78580 0.78092 1.19618 1.19518 1.19786 1.21762 0.92548 0.87520 0.97614 1.22496 0.96037 0.96275 0.93434 0.92418 0.92396 0.91267 0.91057 0.89933 0.89774 0.90837 0.92875 0.92792 0.91259 0.91190 0.93110 0.89287 0.95610 0.96784 0.88126 0.90128 0.90670 0.73203 0.98007 0.99311 0.92443 0.89322 0.89193 0.87135 0.96397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 7.84 71.98 0.56 -1.48 16 2 C 0.07 0.89 4.02 45.26 0.18 1.07 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 4 C -0.13 -1.36 6.47 31.78 0.21 -1.15 16 5 C -0.12 -1.27 6.49 31.98 0.21 -1.06 16 6 C 0.06 0.84 2.39 45.39 0.11 0.95 16 7 H 0.05 0.73 7.38 -2.39 -0.02 0.71 16 8 C -0.14 -1.81 9.13 71.98 0.66 -1.15 16 9 N -0.54 -8.39 4.95 -835.79 -4.14 -12.53 16 10 C 0.06 0.99 3.68 86.31 0.32 1.31 16 11 C 0.06 1.07 3.58 86.31 0.31 1.38 16 12 N -0.53 -10.76 4.63 -895.23 -4.14 -14.90 16 13 C 0.05 1.18 5.46 86.38 0.47 1.65 16 14 C 0.14 4.14 6.61 86.35 0.57 4.71 16 15 N -0.61 -19.03 3.08 -818.23 -2.52 -21.55 16 16 C 0.53 21.73 8.36 179.63 1.50 23.23 16 17 O -0.53 -20.35 10.72 -83.64 -0.90 -21.24 16 18 N -0.61 -31.13 9.15 -469.74 -4.30 -35.43 16 19 C 0.21 12.75 6.08 85.63 0.52 13.27 16 20 C -0.53 -33.33 9.39 25.60 0.24 -33.09 16 21 H 0.04 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.00 0.12 5.46 84.66 0.46 0.58 16 23 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 24 Si 0.97 47.29 29.54 68.60 2.03 49.32 16 25 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 28 C 0.13 2.84 6.64 86.35 0.57 3.41 16 29 C 0.05 0.94 5.62 86.39 0.49 1.42 16 30 H 0.06 0.73 6.75 -2.39 -0.02 0.71 16 31 H 0.06 0.81 6.53 -2.39 -0.02 0.79 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.69 7.81 -2.39 -0.02 0.67 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.80 8.06 -2.39 -0.02 0.78 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.77 5.27 -2.39 -0.01 0.76 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 1.27 5.18 -2.39 -0.01 1.26 16 41 H 0.05 0.83 6.31 -2.39 -0.02 0.82 16 42 H 0.09 1.38 5.38 -2.39 -0.01 1.37 16 43 H 0.03 0.55 7.83 -2.39 -0.02 0.53 16 44 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.10 2.10 6.16 -2.39 -0.01 2.09 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.07 2.66 6.97 -2.39 -0.02 2.65 16 48 H 0.41 11.37 9.06 -74.06 -0.67 10.70 16 49 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 50 H -0.01 -0.67 6.76 -2.38 -0.02 -0.69 16 51 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 52 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.09 1.94 7.03 -2.39 -0.02 1.92 16 54 H 0.11 1.60 7.99 -2.39 -0.02 1.58 16 55 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -76.15 410.05 -6.10 -82.25 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.20 Total: 17.21 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 7.38 Total: 15.05 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -14.81 Total: -142.59 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.90 Total: -21.24 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -76.15 -6.10 -82.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331169386.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.756 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds