Wall clock time and date at job start Tue Mar 31 2020 22:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48503 * 109.47077 * 239.99611 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47049 * 120.00038 * 3 2 1 7 7 C 1.39935 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99863 * 197.67631 * 7 2 1 9 9 C 1.41151 * 120.00151 * 17.68176 * 7 2 1 10 10 C 1.40745 * 120.28567 * 24.72954 * 9 7 2 11 11 C 1.36477 * 119.94350 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.54987 * 359.97438 * 11 10 9 13 13 C 1.38367 * 120.57760 * 0.03088 * 12 11 10 14 14 Br 1.89100 * 119.97859 * 180.02562 * 13 12 11 15 15 C 1.38532 * 120.03966 * 359.96759 * 13 12 11 16 16 O 1.35656 * 120.27030 * 180.29173 * 15 13 12 17 17 C 1.42893 * 117.00055 * 269.72022 * 16 15 13 18 18 C 1.50705 * 109.47182 * 180.02562 * 17 16 15 19 19 O 1.21279 * 119.99857 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00196 * 179.97438 * 18 17 16 21 21 C 1.46504 * 120.00465 * 179.97438 * 20 18 17 22 22 C 1.52995 * 117.50012 * 223.75468 * 21 20 18 23 23 C 1.52994 * 117.50075 * 155.08931 * 21 20 18 24 24 H 0.97006 * 119.99588 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.02597 * 359.96341 * 10 9 7 26 26 H 1.07999 * 119.72613 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.70840 * 179.97438 * 12 11 10 28 28 H 1.09006 * 109.46833 * 299.99624 * 17 16 15 29 29 H 1.08996 * 109.47354 * 60.00009 * 17 16 15 30 30 H 0.97003 * 119.99810 * 0.02562 * 20 18 17 31 31 H 1.08997 * 115.54256 * 9.42239 * 21 20 18 32 32 H 1.08990 * 117.50281 * 359.97438 * 22 21 20 33 33 H 1.09001 * 117.49716 * 145.02633 * 22 21 20 34 34 H 1.09001 * 117.50077 * 214.98192 * 23 21 20 35 35 H 1.09003 * 117.49761 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2119 0.0005 8 1 3.0500 -1.2339 0.2846 9 6 1.3525 -2.4056 -0.3702 10 6 0.2230 -2.3639 -1.2090 11 6 -0.4053 -3.5224 -1.5635 12 6 0.0602 -4.7468 -1.1038 13 6 1.1685 -4.8136 -0.2782 14 35 1.7885 -6.4906 0.3375 15 6 1.8249 -3.6527 0.0968 16 8 2.9154 -3.7131 0.9013 17 6 2.6871 -3.6423 2.3101 18 6 4.0045 -3.7237 3.0373 19 8 5.0374 -3.8313 2.4107 20 7 4.0351 -3.6760 4.3838 21 6 5.3158 -3.7557 5.0908 22 6 5.3868 -4.6579 6.3244 23 6 5.3914 -3.1358 6.4875 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1461 -1.4160 -1.5716 26 1 -1.2720 -3.4863 -2.2070 27 1 -0.4478 -5.6551 -1.3925 28 1 2.1968 -2.6992 2.5517 29 1 2.0503 -4.4720 2.6171 30 1 3.2090 -3.5896 4.8849 31 1 6.2042 -3.6911 4.4627 32 1 4.4806 -5.1918 6.6102 33 1 6.3222 -5.1864 6.5082 34 1 6.3298 -2.6638 6.7785 35 1 4.4884 -2.6684 6.8802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340055867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:17 Heat of formation + Delta-G solvation = -26.506992 kcal Electronic energy + Delta-G solvation = -20891.714886 eV Core-core repulsion = 17515.978209 eV Total energy + Delta-G solvation = -3375.736676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59977 -38.46513 -37.01364 -35.83920 -33.99074 -32.72937 -30.98345 -29.70908 -28.27785 -27.04934 -25.32719 -22.54685 -22.10296 -21.13695 -20.75201 -20.40803 -17.48400 -17.09535 -16.67677 -16.19398 -15.70430 -15.20259 -14.58142 -14.40609 -14.20318 -14.18764 -13.15972 -12.83812 -12.77357 -12.57319 -12.34096 -11.75710 -11.70608 -11.61805 -11.34774 -11.26293 -11.12375 -10.71553 -10.64931 -10.30187 -10.01168 -9.86792 -9.50302 -9.34116 -9.25373 -8.86346 -8.68803 -7.64541 -7.48696 -7.01219 -4.58806 2.32671 2.51502 2.64349 2.87018 2.96432 2.99692 3.06234 3.11482 3.78259 3.82075 4.31554 4.65127 4.72806 4.82513 4.87217 5.15616 5.45012 5.45426 5.65988 5.77695 5.86899 5.90249 5.94575 6.07489 6.33649 6.55982 6.72409 6.74306 6.94194 6.99510 7.31545 7.56948 7.64066 7.75299 7.90364 8.18798 8.46133 8.51243 8.57969 8.84508 9.90700 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.008170 B = 0.006097 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.558629 B = 4590.989357 C = 7626.460095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.437 4.437 8 H 0.090 0.910 9 C 0.108 3.892 10 C -0.143 4.143 11 C -0.099 4.099 12 C -0.211 4.211 13 C -0.051 4.051 14 Br -0.099 7.099 15 C -0.022 4.022 16 O -0.285 6.285 17 C 0.045 3.955 18 C 0.525 3.475 19 O -0.516 6.516 20 N -0.709 5.709 21 C 0.087 3.913 22 C -0.196 4.196 23 C -0.192 4.192 24 H 0.286 0.714 25 H 0.127 0.873 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.401 0.599 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -4.817 8.638 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.465 4.465 8 H 0.108 0.892 9 C 0.104 3.896 10 C -0.162 4.162 11 C -0.119 4.119 12 C -0.232 4.232 13 C -0.130 4.130 14 Br -0.014 7.014 15 C -0.069 4.069 16 O -0.200 6.200 17 C -0.033 4.033 18 C 0.311 3.689 19 O -0.389 6.389 20 N -0.362 5.362 21 C -0.019 4.019 22 C -0.235 4.235 23 C -0.230 4.230 24 H 0.097 0.903 25 H 0.144 0.856 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.235 0.765 31 H 0.155 0.845 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.666 -5.369 8.310 10.247 hybrid contribution -0.608 1.162 0.393 1.369 sum 2.059 -4.208 8.703 9.883 Atomic orbital electron populations 1.69812 1.07682 1.30027 1.33221 1.26021 0.94784 1.01745 0.91896 0.86276 0.80154 0.79433 0.80555 1.18392 1.20142 1.18714 1.19600 0.98586 0.90392 1.37945 0.89230 1.17766 0.90989 0.90962 0.89908 1.21139 0.98491 0.97540 0.99068 1.20458 0.99079 0.92504 0.99820 1.20206 0.99052 0.97388 1.06576 1.21814 0.98815 0.88101 1.04254 1.96440 1.89629 1.26462 1.88852 1.18236 0.95781 0.91261 1.01663 1.86140 1.28362 1.93431 1.12086 1.22237 0.93183 1.02404 0.85472 1.20553 0.91575 0.75239 0.81485 1.90683 1.34977 1.46818 1.66433 1.45297 1.08295 1.76254 1.06364 1.21522 0.89236 1.03354 0.87804 1.23432 1.03748 0.93260 1.03075 1.23381 1.03833 0.95879 0.99935 0.90309 0.85564 0.88218 0.87935 0.89939 0.91213 0.76495 0.84526 0.88549 0.88157 0.88019 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.42 10.96 55.55 0.61 -17.81 16 2 C 0.08 1.75 5.14 -17.33 -0.09 1.67 16 3 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.44 -11.00 8.72 -37.84 -0.33 -11.33 16 8 H 0.09 2.31 7.65 -52.49 -0.40 1.91 16 9 C 0.11 2.73 5.58 -106.68 -0.60 2.13 16 10 C -0.14 -3.43 8.64 -39.27 -0.34 -3.77 16 11 C -0.10 -2.15 9.97 -40.00 -0.40 -2.55 16 12 C -0.21 -4.53 9.78 -39.32 -0.38 -4.91 16 13 C -0.05 -1.14 6.23 -39.43 -0.25 -1.39 16 14 Br -0.10 -1.91 33.16 -68.01 -2.26 -4.17 16 15 C -0.02 -0.54 5.75 -38.31 -0.22 -0.76 16 16 O -0.28 -6.74 8.22 -38.58 -0.32 -7.06 16 17 C 0.05 0.88 6.54 36.01 0.24 1.12 16 18 C 0.52 9.61 7.91 -10.99 -0.09 9.53 16 19 O -0.52 -11.49 16.07 -14.35 -0.23 -11.72 16 20 N -0.71 -9.62 5.57 -53.81 -0.30 -9.91 16 21 C 0.09 1.05 6.43 -67.93 -0.44 0.61 16 22 C -0.20 -1.82 10.46 -26.69 -0.28 -2.10 16 23 C -0.19 -1.73 10.46 -26.69 -0.28 -2.01 16 24 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 25 H 0.13 3.07 6.16 -52.49 -0.32 2.75 16 26 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 28 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 4.25 8.83 -40.82 -0.36 3.89 16 31 H 0.14 1.87 7.40 -51.93 -0.38 1.48 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -28.57 329.80 -9.99 -38.56 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.99 Total: 8.12 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.45 Total: -13.75 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.31 Total: -27.73 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.55 Total: -18.78 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 35 Polarization: -1.91 SS G_CDS: -2.26 Total: -4.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.57 -9.99 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340055867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.056 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds