Wall clock time and date at job start Tue Mar 31 2020 22:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48503 * 109.47077 * 239.99611 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47049 * 120.00038 * 3 2 1 7 7 C 1.39935 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99863 * 197.67631 * 7 2 1 9 9 C 1.41151 * 120.00151 * 17.68176 * 7 2 1 10 10 C 1.40745 * 120.28567 * 24.72954 * 9 7 2 11 11 C 1.36477 * 119.94350 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.54987 * 359.97438 * 11 10 9 13 13 C 1.38367 * 120.57760 * 0.03088 * 12 11 10 14 14 Br 1.89100 * 119.97859 * 180.02562 * 13 12 11 15 15 C 1.38532 * 120.03966 * 359.96759 * 13 12 11 16 16 O 1.35656 * 120.27030 * 180.29173 * 15 13 12 17 17 C 1.42893 * 117.00055 * 269.72022 * 16 15 13 18 18 C 1.50705 * 109.47182 * 180.02562 * 17 16 15 19 19 O 1.21279 * 119.99857 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00196 * 179.97438 * 18 17 16 21 21 C 1.46504 * 120.00465 * 179.97438 * 20 18 17 22 22 C 1.52995 * 117.50012 * 223.75468 * 21 20 18 23 23 C 1.52994 * 117.50075 * 155.08931 * 21 20 18 24 24 H 0.97006 * 119.99588 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.02597 * 359.96341 * 10 9 7 26 26 H 1.07999 * 119.72613 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.70840 * 179.97438 * 12 11 10 28 28 H 1.09006 * 109.46833 * 299.99624 * 17 16 15 29 29 H 1.08996 * 109.47354 * 60.00009 * 17 16 15 30 30 H 0.97003 * 119.99810 * 0.02562 * 20 18 17 31 31 H 1.08997 * 115.54256 * 9.42239 * 21 20 18 32 32 H 1.08990 * 117.50281 * 359.97438 * 22 21 20 33 33 H 1.09001 * 117.49716 * 145.02633 * 22 21 20 34 34 H 1.09001 * 117.50077 * 214.98192 * 23 21 20 35 35 H 1.09003 * 117.49761 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2119 0.0005 8 1 3.0500 -1.2339 0.2846 9 6 1.3525 -2.4056 -0.3702 10 6 0.2230 -2.3639 -1.2090 11 6 -0.4053 -3.5224 -1.5635 12 6 0.0602 -4.7468 -1.1038 13 6 1.1685 -4.8136 -0.2782 14 35 1.7885 -6.4906 0.3375 15 6 1.8249 -3.6527 0.0968 16 8 2.9154 -3.7131 0.9013 17 6 2.6871 -3.6423 2.3101 18 6 4.0045 -3.7237 3.0373 19 8 5.0374 -3.8313 2.4107 20 7 4.0351 -3.6760 4.3838 21 6 5.3158 -3.7557 5.0908 22 6 5.3868 -4.6579 6.3244 23 6 5.3914 -3.1358 6.4875 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1461 -1.4160 -1.5716 26 1 -1.2720 -3.4863 -2.2070 27 1 -0.4478 -5.6551 -1.3925 28 1 2.1968 -2.6992 2.5517 29 1 2.0503 -4.4720 2.6171 30 1 3.2090 -3.5896 4.8849 31 1 6.2042 -3.6911 4.4627 32 1 4.4806 -5.1918 6.6102 33 1 6.3222 -5.1864 6.5082 34 1 6.3298 -2.6638 6.7785 35 1 4.4884 -2.6684 6.8802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340055867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:16 Heat of formation + Delta-G solvation = -41.956607 kcal Electronic energy + Delta-G solvation = -20892.384831 eV Core-core repulsion = 17515.978209 eV Total energy + Delta-G solvation = -3376.406622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03616 -40.10609 -38.19291 -37.48529 -35.75722 -33.97101 -32.70357 -31.44619 -29.92284 -28.68044 -27.11269 -23.29254 -23.23929 -22.91455 -22.36497 -21.77485 -19.26542 -18.65275 -18.06722 -17.55369 -17.32352 -16.82109 -16.07348 -15.85430 -15.74720 -15.36690 -14.82901 -14.45427 -14.18281 -14.06720 -13.68776 -13.40610 -13.35669 -12.96806 -12.79357 -12.51721 -12.36571 -12.29915 -11.97955 -11.76066 -11.57266 -11.48298 -11.12046 -11.00039 -10.86316 -10.57505 -9.78748 -9.44136 -9.23326 -8.75562 -6.43927 0.58388 0.77248 0.92826 1.36443 1.44666 1.45396 1.49312 1.81984 2.16234 2.57083 2.97555 3.15280 3.58150 3.75708 3.82008 4.06289 4.07399 4.24086 4.36159 4.41312 4.67101 4.76144 4.79584 4.93736 4.97182 5.01848 5.13968 5.21233 5.24794 5.46742 5.56922 5.83686 5.95650 6.10760 6.32649 6.44406 6.66666 6.76291 7.06060 7.16026 8.18753 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.008170 B = 0.006097 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.558629 B = 4590.989357 C = 7626.460095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.047 3.953 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.468 4.468 8 H 0.068 0.932 9 C 0.081 3.919 10 C -0.161 4.161 11 C -0.096 4.096 12 C -0.204 4.204 13 C -0.067 4.067 14 Br -0.070 7.070 15 C -0.036 4.036 16 O -0.308 6.308 17 C 0.047 3.953 18 C 0.526 3.474 19 O -0.565 6.565 20 N -0.687 5.687 21 C 0.045 3.955 22 C -0.177 4.177 23 C -0.169 4.169 24 H 0.295 0.705 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.417 0.583 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -5.160 10.078 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.171 4.171 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.189 1.189 7 C -0.497 4.497 8 H 0.086 0.914 9 C 0.077 3.923 10 C -0.181 4.181 11 C -0.115 4.115 12 C -0.225 4.225 13 C -0.146 4.146 14 Br 0.015 6.985 15 C -0.083 4.083 16 O -0.224 6.224 17 C -0.031 4.031 18 C 0.313 3.687 19 O -0.443 6.443 20 N -0.340 5.340 21 C -0.061 4.061 22 C -0.216 4.216 23 C -0.207 4.207 24 H 0.106 0.894 25 H 0.135 0.865 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.254 0.746 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.014 -5.725 9.810 11.535 hybrid contribution -0.419 1.118 0.029 1.194 sum 1.595 -4.607 9.839 10.980 Atomic orbital electron populations 1.69812 1.08497 1.31289 1.33182 1.26608 0.95469 1.03908 0.91116 0.85382 0.79082 0.76217 0.79970 1.18893 1.18137 1.18936 1.19561 0.97898 0.91857 1.40338 0.91378 1.18084 0.91942 0.91622 0.90674 1.21144 0.98920 0.98157 0.99868 1.20783 0.99504 0.91789 0.99448 1.20566 0.98409 0.98321 1.05238 1.22029 0.99054 0.89090 1.04438 1.96431 1.89540 1.23945 1.88627 1.18453 0.95815 0.91797 1.02219 1.86050 1.28843 1.93540 1.13994 1.22323 0.94314 1.02809 0.83640 1.20390 0.90339 0.75120 0.82879 1.90656 1.36118 1.49707 1.67787 1.45078 1.09950 1.74171 1.04789 1.21665 0.87559 1.08012 0.88839 1.23520 1.04897 0.93696 0.99456 1.23493 1.05179 0.95969 0.96042 0.89355 0.86476 0.85079 0.85253 0.90303 0.89627 0.74624 0.86839 0.87474 0.86936 0.86626 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.15 10.96 21.83 0.24 -37.91 16 2 C 0.05 2.23 5.14 85.25 0.44 2.66 16 3 Si 0.97 36.89 29.59 68.60 2.03 38.92 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.47 -24.55 8.72 23.40 0.20 -24.34 16 8 H 0.07 3.74 7.65 -2.91 -0.02 3.72 16 9 C 0.08 4.20 5.58 -21.20 -0.12 4.09 16 10 C -0.16 -7.84 8.64 22.47 0.19 -7.65 16 11 C -0.10 -4.06 9.97 22.00 0.22 -3.84 16 12 C -0.20 -8.44 9.78 22.44 0.22 -8.22 16 13 C -0.07 -2.97 6.23 22.37 0.14 -2.83 16 14 Br -0.07 -2.65 33.16 -20.37 -0.68 -3.33 16 15 C -0.04 -1.78 5.75 23.09 0.13 -1.65 16 16 O -0.31 -15.08 8.22 -70.68 -0.58 -15.66 16 17 C 0.05 1.87 6.54 71.24 0.47 2.34 16 18 C 0.53 19.72 7.91 87.66 0.69 20.41 16 19 O -0.56 -26.23 16.07 16.01 0.26 -25.98 16 20 N -0.69 -18.29 5.57 -442.55 -2.46 -20.75 16 21 C 0.04 1.04 6.43 44.99 0.29 1.33 16 22 C -0.18 -2.83 10.46 30.62 0.32 -2.51 16 23 C -0.17 -2.60 10.46 30.62 0.32 -2.28 16 24 H 0.30 12.56 8.30 -92.70 -0.77 11.79 16 25 H 0.12 5.82 6.16 -2.91 -0.02 5.80 16 26 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 27 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 29 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.42 8.27 8.83 -92.71 -0.82 7.45 16 31 H 0.11 3.20 7.40 -2.39 -0.02 3.18 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -63.60 329.80 2.64 -60.97 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.31 Total: 26.22 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 3.52 Total: -22.48 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -2.22 Total: -58.66 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.32 Total: -41.64 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 35 Polarization: -2.65 SS G_CDS: -0.68 Total: -3.33 kcal Total: -63.60 2.64 -60.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340055867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.008 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds