Wall clock time and date at job start Tue Mar 31 2020 22:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51364 * 2 1 4 4 C 1.53235 * 109.49488 * 239.92921 * 2 1 3 5 5 N 1.47081 * 108.52229 * 186.20521 * 4 2 1 6 6 C 1.34772 * 120.88634 * 231.21067 * 5 4 2 7 7 O 1.21583 * 119.99870 * 174.75896 * 6 5 4 8 8 N 1.34777 * 119.99910 * 354.75187 * 6 5 4 9 9 C 1.46495 * 120.00323 * 184.97472 * 8 6 5 10 10 C 1.53000 * 109.47372 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46766 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00360 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99541 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47240 * 60.00416 * 15 13 11 17 17 H 1.48502 * 109.47128 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47152 * 300.00008 * 15 13 11 19 19 C 1.47082 * 118.23380 * 51.18902 * 5 4 2 20 20 C 1.53238 * 108.52263 * 308.81569 * 19 5 4 21 21 N 1.46897 * 109.49143 * 120.06381 * 2 1 3 22 22 C 1.46906 * 111.00409 * 307.21597 * 21 2 1 23 23 C 1.53119 * 109.52318 * 182.07187 * 22 21 2 24 24 C 1.53039 * 109.27360 * 177.56674 * 23 22 21 25 25 N 1.46839 * 109.51683 * 300.80378 * 24 23 22 26 26 C 1.46903 * 110.99942 * 185.84343 * 25 24 23 27 27 C 1.46851 * 111.19560 * 61.75253 * 25 24 23 28 28 C 1.53035 * 109.52035 * 298.25037 * 27 25 24 29 29 H 1.08997 * 109.47396 * 299.93227 * 1 2 3 30 30 H 1.08995 * 109.47246 * 59.93518 * 1 2 3 31 31 H 1.09009 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.62410 * 66.50404 * 4 2 1 33 33 H 1.08999 * 109.63058 * 305.92033 * 4 2 1 34 34 H 0.97008 * 119.99869 * 4.98354 * 8 6 5 35 35 H 1.09006 * 109.47077 * 300.00933 * 9 8 6 36 36 H 1.09000 * 109.47184 * 60.00223 * 9 8 6 37 37 H 1.08997 * 109.46885 * 299.99914 * 10 9 8 38 38 H 1.08997 * 109.47116 * 60.00264 * 10 9 8 39 39 H 0.96993 * 120.00118 * 179.97438 * 14 13 11 40 40 H 1.08995 * 109.63212 * 189.10292 * 19 5 4 41 41 H 1.08999 * 109.63099 * 68.52323 * 19 5 4 42 42 H 1.09003 * 109.49004 * 293.86843 * 20 19 5 43 43 H 1.09000 * 109.51814 * 173.80432 * 20 19 5 44 44 H 1.08997 * 109.57147 * 61.89726 * 22 21 2 45 45 H 1.09007 * 109.51096 * 57.62906 * 23 22 21 46 46 H 1.08995 * 109.49693 * 297.50505 * 23 22 21 47 47 H 1.09002 * 109.46106 * 180.79259 * 24 23 22 48 48 H 1.09000 * 109.45821 * 60.82177 * 24 23 22 49 49 H 1.09004 * 109.47058 * 60.00047 * 26 25 24 50 50 H 1.09001 * 109.47458 * 180.02562 * 26 25 24 51 51 H 1.08998 * 109.47420 * 300.00180 * 26 25 24 52 52 H 1.08997 * 109.46397 * 58.27370 * 27 25 24 53 53 H 1.09006 * 109.46135 * 178.25182 * 27 25 24 54 54 H 1.09007 * 109.50111 * 179.11830 * 28 27 25 55 55 H 1.08999 * 109.50830 * 299.24190 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2501 5 7 3.5043 -0.8431 -1.1553 6 6 4.2978 -0.4486 -2.1707 7 8 5.5064 -0.4651 -2.0394 8 7 3.7516 -0.0359 -3.3316 9 6 4.6124 0.2890 -4.4716 10 6 3.7477 0.7281 -5.6549 11 6 4.6334 1.0617 -6.8278 12 1 5.7057 0.9701 -6.7380 13 6 4.0745 1.4838 -8.0154 14 7 2.7686 1.5948 -8.1250 15 14 5.1723 1.8980 -9.4690 16 1 5.9621 0.6996 -9.8501 17 1 4.3329 2.3241 -10.6176 18 1 6.0944 3.0002 -9.0946 19 6 4.0782 -1.4040 0.0773 20 6 3.4866 -0.6535 1.2752 21 7 2.0201 -0.6937 1.1985 22 6 1.4139 -0.1358 2.4148 23 6 1.9859 -0.8471 3.6442 24 6 1.3963 -0.2208 4.9100 25 7 1.7291 1.2089 4.9507 26 6 1.2987 1.8136 6.2184 27 6 1.1503 1.9215 3.8045 28 6 1.7324 1.3591 2.5057 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7777 -0.1503 -2.1388 33 1 1.5958 -1.7170 -1.3062 34 1 2.7884 0.0462 -3.4123 35 1 5.2894 1.0979 -4.1967 36 1 5.1921 -0.5906 -4.7514 37 1 3.0705 -0.0805 -5.9299 38 1 3.1683 1.6079 -5.3749 39 1 2.3755 1.8921 -8.9603 40 1 5.1611 -1.2804 0.0663 41 1 3.8285 -2.4626 0.1488 42 1 3.8235 0.3830 1.2574 43 1 3.8156 -1.1270 2.2002 44 1 0.3336 -0.2767 2.3819 45 1 3.0705 -0.7386 3.6558 46 1 1.7257 -1.9048 3.6063 47 1 1.8122 -0.7156 5.7876 48 1 0.3130 -0.3416 4.9042 49 1 1.7999 1.3144 7.0477 50 1 1.5569 2.8726 6.2219 51 1 0.2198 1.7027 6.3262 52 1 0.0682 1.7908 3.8042 53 1 1.3879 2.9828 3.8791 54 1 1.2910 1.8777 1.6546 55 1 2.8130 1.5020 2.4993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345808345.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:18 Heat of formation + Delta-G solvation = -34.891185 kcal Electronic energy + Delta-G solvation = -30781.805446 eV Core-core repulsion = 26852.767516 eV Total energy + Delta-G solvation = -3929.037930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75452 -40.63506 -38.74089 -36.69782 -36.04814 -34.85770 -33.89732 -32.70589 -31.80130 -31.27304 -28.88808 -27.77984 -26.74840 -26.15837 -24.41966 -23.93642 -23.23176 -22.77704 -21.72319 -20.92561 -19.82090 -19.12399 -18.49580 -17.46621 -17.01202 -16.79133 -16.65278 -16.49549 -16.21562 -16.01285 -15.59190 -15.49433 -15.42683 -15.22841 -14.92211 -14.62054 -14.35788 -14.23351 -13.93431 -13.44340 -13.36400 -13.28847 -13.15124 -13.04215 -12.93345 -12.91322 -12.60359 -12.53413 -12.45142 -12.36385 -12.25789 -12.23630 -11.81815 -11.68740 -11.63205 -11.51629 -11.46075 -11.23935 -11.08334 -10.59819 -10.20659 -9.61082 -9.29178 -9.15647 -8.23544 -6.33870 1.41903 1.44595 1.52037 1.62863 2.09326 2.40924 2.78006 2.96352 3.00385 3.10947 3.69110 3.75618 3.85889 3.91651 4.05512 4.10528 4.15699 4.22112 4.27922 4.36294 4.40828 4.47228 4.49589 4.51668 4.53046 4.55604 4.59449 4.65730 4.73091 4.76347 4.81706 4.84559 4.86274 4.92764 4.96316 4.99636 5.02150 5.06911 5.10779 5.20722 5.28981 5.34465 5.41639 5.45834 5.52553 5.58217 5.77766 5.87394 6.02691 6.11660 6.13138 6.16683 6.17782 6.78395 6.95304 7.35060 7.52655 8.88109 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002033 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.575451 B =13767.404388 C =14135.034724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.034 0.966 4 C 0.117 3.883 5 N -0.629 5.629 6 C 0.699 3.301 7 O -0.638 6.638 8 N -0.735 5.735 9 C 0.160 3.840 10 C 0.026 3.974 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.925 5.925 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.133 3.867 20 C 0.047 3.953 21 N -0.520 5.520 22 C 0.087 3.913 23 C -0.109 4.109 24 C 0.059 3.941 25 N -0.560 5.560 26 C 0.026 3.974 27 C 0.064 3.936 28 C -0.146 4.146 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.403 0.597 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.038 0.962 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.029 0.971 52 H 0.039 0.961 53 H 0.071 0.929 54 H 0.065 0.935 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -4.240 29.623 31.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 H 0.052 0.948 4 C -0.005 4.005 5 N -0.366 5.366 6 C 0.401 3.599 7 O -0.520 6.520 8 N -0.391 5.391 9 C 0.036 3.964 10 C -0.012 4.012 11 C -0.586 4.586 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.564 5.564 15 Si 0.790 3.210 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.194 1.194 19 C 0.010 3.990 20 C -0.082 4.082 21 N -0.244 5.244 22 C -0.021 4.021 23 C -0.147 4.147 24 C -0.069 4.069 25 N -0.285 5.285 26 C -0.122 4.122 27 C -0.064 4.064 28 C -0.186 4.186 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.241 0.759 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.041 0.959 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.056 0.944 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.048 0.952 52 H 0.057 0.943 53 H 0.089 0.911 54 H 0.084 0.916 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.961 -4.680 29.491 31.175 hybrid contribution -0.439 1.340 -0.990 1.723 sum -9.400 -3.340 28.501 30.196 Atomic orbital electron populations 1.21850 0.91637 1.03567 1.02900 1.21941 0.97036 0.95023 0.89825 0.94807 1.21972 0.78367 1.02176 0.98034 1.47382 1.06815 1.66241 1.16175 1.16087 0.84886 0.78057 0.80874 1.90835 1.14453 1.63779 1.82951 1.45403 1.10853 1.71439 1.11416 1.21091 0.92742 0.98277 0.84319 1.19108 0.94925 0.95647 0.91472 1.21419 0.93785 1.45736 0.97626 0.92331 1.25869 0.96538 0.95057 1.01690 1.70050 1.11381 1.47556 1.27455 0.85494 0.78538 0.78949 0.78036 1.19340 1.20498 1.19436 1.21648 0.98385 0.97824 0.81155 1.22514 0.88215 0.98660 0.98816 1.62252 1.05745 1.54522 1.01832 1.21855 0.99805 0.91291 0.89107 1.21718 1.00865 0.99953 0.92163 1.22088 0.98425 0.87638 0.98742 1.61934 1.60299 1.03389 1.02911 1.22366 0.98473 1.00321 0.91057 1.21956 0.96500 0.98056 0.89911 1.22227 1.01159 0.97922 0.97251 0.91333 0.91229 0.90726 0.90008 0.89222 0.75910 0.94045 0.93774 0.97230 0.97428 0.92522 0.90578 0.89744 0.95895 0.87228 0.88851 0.91450 0.89677 0.89721 0.94382 0.90634 0.91351 0.95244 0.94289 0.91055 0.91639 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.62 71.98 0.62 -1.23 16 2 C 0.07 1.27 1.97 44.99 0.09 1.35 16 3 H 0.03 0.73 6.76 -2.39 -0.02 0.71 16 4 C 0.12 2.50 5.82 86.35 0.50 3.00 16 5 N -0.63 -17.68 3.01 -835.95 -2.52 -20.19 16 6 C 0.70 26.36 8.31 179.06 1.49 27.85 16 7 O -0.64 -29.18 15.80 -3.98 -0.06 -29.25 16 8 N -0.73 -27.77 5.46 -478.54 -2.62 -30.39 16 9 C 0.16 7.25 5.62 86.38 0.49 7.74 16 10 C 0.03 1.34 5.09 29.85 0.15 1.49 16 11 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.01 0.42 5.46 84.65 0.46 0.88 16 14 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 15 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 C 0.13 3.17 6.61 86.35 0.57 3.74 16 20 C 0.05 0.89 4.82 86.38 0.42 1.30 16 21 N -0.52 -8.53 4.52 -844.48 -3.81 -12.34 16 22 C 0.09 1.18 1.82 44.99 0.08 1.26 16 23 C -0.11 -1.30 5.03 30.65 0.15 -1.14 16 24 C 0.06 0.65 5.46 86.33 0.47 1.12 16 25 N -0.56 -7.51 4.91 -922.58 -4.53 -12.04 16 26 C 0.03 0.26 9.59 127.69 1.22 1.49 16 27 C 0.06 0.87 5.46 86.32 0.47 1.34 16 28 C -0.15 -2.24 4.53 30.65 0.14 -2.10 16 29 H 0.07 0.79 5.93 -2.39 -0.01 0.78 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 1.75 5.74 -2.39 -0.01 1.74 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.40 13.22 6.01 -92.70 -0.56 12.66 16 35 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.08 2.14 7.04 -2.39 -0.02 2.12 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.02 0.53 6.79 -2.39 -0.02 0.51 16 43 H 0.11 1.71 5.74 -2.39 -0.01 1.70 16 44 H 0.09 1.17 6.33 -2.39 -0.02 1.15 16 45 H 0.07 0.94 6.04 -2.38 -0.01 0.92 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 48 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 51 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 53 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 54 H 0.07 1.06 6.27 -2.38 -0.01 1.04 16 55 H 0.05 1.06 6.62 -2.39 -0.02 1.05 16 Total: -1.00 -69.01 406.65 -3.36 -72.37 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.31 Total: 22.62 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 7.56 Total: 17.30 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -13.19 Total: -129.04 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.25 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.01 -3.36 -72.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345808345.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.477 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds