Wall clock time and date at job start Tue Mar 31 2020 22:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31661 * 119.68217 * 2 1 4 4 C 1.32395 * 121.81629 * 180.28673 * 3 2 1 5 5 O 1.35520 * 119.52358 * 179.74550 * 4 3 2 6 6 C 1.39257 * 120.95068 * 359.47789 * 4 3 2 7 7 Br 1.89097 * 120.37567 * 180.23263 * 6 4 3 8 8 C 1.38016 * 119.25285 * 0.24734 * 6 4 3 9 9 C 1.39581 * 119.68005 * 179.76166 * 2 1 3 10 10 C 1.47514 * 120.50284 * 0.02562 * 9 2 1 11 11 O 1.21617 * 119.99508 * 308.49692 * 10 9 2 12 12 N 1.34773 * 120.00427 * 128.49760 * 10 9 2 13 13 C 1.36902 * 120.00328 * 184.60604 * 12 10 9 14 14 H 1.08002 * 120.00024 * 320.62063 * 13 12 10 15 15 C 1.39019 * 120.00075 * 140.61575 * 13 12 10 16 16 N 1.31389 * 120.00161 * 164.69918 * 15 13 12 17 17 Si 1.86796 * 120.00235 * 344.69594 * 15 13 12 18 18 H 1.48500 * 109.46845 * 91.39664 * 17 15 13 19 19 H 1.48497 * 109.47588 * 211.39796 * 17 15 13 20 20 H 1.48496 * 109.47159 * 331.40035 * 17 15 13 21 21 C 1.46506 * 119.99747 * 4.60407 * 12 10 9 22 22 C 1.47202 * 109.46654 * 96.64734 * 21 12 10 23 23 N 5.72060 * 127.63658 * 191.45847 * 2 1 3 24 24 H 1.08996 * 109.47324 * 273.14435 * 1 2 3 25 25 H 1.09003 * 109.47094 * 33.14298 * 1 2 3 26 26 H 1.09004 * 109.47089 * 153.13943 * 1 2 3 27 27 H 0.96700 * 114.00575 * 269.73039 * 5 4 3 28 28 H 1.07994 * 120.83278 * 180.02562 * 8 6 4 29 29 H 0.96998 * 120.00268 * 180.02562 * 16 15 13 30 30 H 1.08997 * 109.47031 * 216.64358 * 21 12 10 31 31 H 1.08992 * 109.47002 * 336.64532 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1438 0.0000 4 6 3.4820 1.1932 -0.0056 5 8 4.1054 2.3964 -0.0106 6 6 4.2422 0.0264 -0.0009 7 35 6.1311 0.1158 -0.0025 8 6 3.6015 -1.1960 0.0045 9 6 2.1982 -1.2127 0.0050 10 6 1.4647 -2.4925 0.0098 11 8 0.5932 -2.6908 0.8346 12 7 1.7603 -3.4421 -0.8998 13 6 1.0176 -4.5908 -0.9563 14 1 0.6832 -5.0630 -0.0444 15 6 0.6938 -5.1493 -2.1875 16 7 0.2527 -6.3852 -2.2526 17 14 0.8856 -4.1426 -3.7493 18 1 2.2395 -4.3641 -4.3177 19 1 -0.1407 -4.5614 -4.7374 20 1 0.7106 -2.7021 -3.4343 21 6 2.8764 -3.2450 -1.8281 22 6 4.0753 -3.9194 -1.3041 23 7 5.0003 -4.4398 -0.8999 24 1 -0.3634 0.0564 1.0261 25 1 -0.3633 0.8605 -0.5619 26 1 -0.3633 -0.9168 -0.4643 27 1 4.2864 2.7421 -0.8954 28 1 4.1659 -2.1167 0.0087 29 1 0.0271 -6.7751 -3.1117 30 1 2.6188 -3.6653 -2.8003 31 1 3.0764 -2.1789 -1.9346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351963536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:27 Heat of formation + Delta-G solvation = 23.992483 kcal Electronic energy + Delta-G solvation = -21345.630546 eV Core-core repulsion = 17868.543347 eV Total energy + Delta-G solvation = -3477.087198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00985 -39.16470 -37.26205 -36.53466 -34.95336 -33.75100 -32.52286 -31.60488 -30.65220 -28.07526 -27.35683 -25.52670 -23.82809 -22.37594 -19.93945 -19.02271 -18.75441 -17.37977 -16.84796 -16.73422 -16.29084 -15.81071 -14.68367 -14.53714 -14.27869 -13.75980 -13.69674 -13.41360 -13.14569 -12.72267 -12.66194 -12.54114 -12.47600 -12.14506 -12.02690 -11.82277 -11.76118 -11.20822 -11.19521 -10.62114 -10.52319 -10.20086 -9.86931 -9.73389 -9.42493 -9.02386 -8.74539 -8.31030 -6.67484 -4.34733 0.48328 0.80543 1.33436 2.72896 2.77856 2.90428 2.94162 3.06182 3.07747 3.24802 3.52089 3.82522 3.98026 4.24397 4.40198 4.55586 4.62632 4.77491 5.03086 5.12890 5.21208 5.40393 5.44574 5.63750 5.79104 5.92818 5.99809 6.36534 7.13619 7.15301 7.61759 7.76292 7.87209 8.08135 8.54037 8.89822 9.23689 10.42823 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.005283 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.390946 B = 5298.627766 C = 6299.790844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.211 3.789 3 N -0.491 5.491 4 C 0.351 3.649 5 O -0.468 6.468 6 C -0.172 4.172 7 Br -0.024 7.024 8 C -0.020 4.020 9 C -0.166 4.166 10 C 0.518 3.482 11 O -0.526 6.526 12 N -0.448 5.448 13 C -0.323 4.323 14 H 0.117 0.883 15 C 0.065 3.935 16 N -0.847 5.847 17 Si 0.864 3.136 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.254 1.254 21 C 0.170 3.830 22 C 0.200 3.800 23 N -0.422 5.422 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.403 0.597 28 H 0.148 0.852 29 H 0.281 0.719 30 H 0.108 0.892 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 15.379 -2.533 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 N -0.210 5.210 4 C 0.169 3.831 5 O -0.276 6.276 6 C -0.255 4.255 7 Br 0.061 6.939 8 C -0.048 4.048 9 C -0.172 4.172 10 C 0.306 3.694 11 O -0.405 6.405 12 N -0.170 5.170 13 C -0.449 4.449 14 H 0.134 0.866 15 C -0.143 4.143 16 N -0.481 5.481 17 Si 0.691 3.309 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.178 1.178 21 C 0.044 3.956 22 C -0.119 4.119 23 N -0.100 5.100 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.262 0.738 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.894 15.092 -1.017 17.547 hybrid contribution 0.079 -0.214 -1.587 1.603 sum 8.973 14.877 -2.604 17.568 Atomic orbital electron populations 1.20896 0.86765 1.04314 1.04436 1.21283 0.97463 0.85215 0.88843 1.67208 1.08071 1.29864 1.15898 1.18868 0.86601 0.84488 0.93192 1.84746 1.76526 1.32396 1.33888 1.22903 0.92591 0.95860 1.14154 1.96735 1.00472 1.99020 1.97692 1.21858 0.93593 0.97233 0.92136 1.21297 0.93347 0.97088 1.05493 1.17683 0.84489 0.81919 0.85316 1.90739 1.33111 1.79139 1.37488 1.43537 1.24598 1.17454 1.31396 1.19133 1.31079 0.98750 0.95964 0.86570 1.25411 0.95325 0.95301 0.98292 1.69640 1.39818 1.11516 1.27128 0.87150 0.78205 0.82182 0.83405 1.19326 1.20205 1.17817 1.19668 0.80994 0.99418 0.95538 1.29701 0.94212 0.93899 0.94102 1.81093 1.12381 1.08502 1.08049 0.88942 0.90236 0.88928 0.73781 0.83445 0.90866 0.87478 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.34 36.01 0.34 -1.17 16 2 C 0.21 3.30 6.82 -82.16 -0.56 2.74 16 3 N -0.49 -7.27 10.28 -9.16 -0.09 -7.37 16 4 C 0.35 4.74 7.74 -16.93 -0.13 4.61 16 5 O -0.47 -5.13 12.89 -18.25 -0.24 -5.37 16 6 C -0.17 -2.38 6.25 -39.28 -0.25 -2.62 16 7 Br -0.02 -0.29 33.18 -68.01 -2.26 -2.54 16 8 C -0.02 -0.32 7.47 -38.87 -0.29 -0.61 16 9 C -0.17 -2.82 4.83 -104.82 -0.51 -3.33 16 10 C 0.52 10.72 6.15 -12.48 -0.08 10.65 16 11 O -0.53 -12.46 15.68 5.26 0.08 -12.37 16 12 N -0.45 -9.56 2.16 -119.13 -0.26 -9.82 16 13 C -0.32 -8.09 9.34 -15.00 -0.14 -8.23 16 14 H 0.12 3.33 7.91 -52.49 -0.41 2.91 16 15 C 0.07 1.61 5.41 -17.45 -0.09 1.51 16 16 N -0.85 -22.26 13.96 55.50 0.77 -21.48 16 17 Si 0.86 17.28 24.80 -169.99 -4.22 13.06 16 18 H -0.27 -4.89 6.65 56.52 0.38 -4.52 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.25 -4.72 7.10 56.52 0.40 -4.32 16 21 C 0.17 3.04 4.40 -6.82 -0.03 3.01 16 22 C 0.20 3.72 13.34 -20.77 -0.28 3.44 16 23 N -0.42 -8.30 18.54 42.14 0.78 -7.51 16 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.45 6.60 -51.93 -0.34 1.11 16 27 H 0.40 2.41 9.06 45.56 0.41 2.83 16 28 H 0.15 2.36 5.27 -52.49 -0.28 2.08 16 29 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.11 1.94 2.57 -51.93 -0.13 1.81 16 31 H 0.11 1.59 5.50 -51.93 -0.29 1.30 16 LS Contribution 294.94 15.07 4.44 4.44 Total: -1.00 -29.13 294.94 -4.04 -33.17 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -1.05 Total: 5.80 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -2.02 Total: 9.99 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 1.20 Total: -46.18 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.15 Total: -17.74 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -4.22 Total: 13.06 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.26 Total: -2.54 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.13 -4.04 -33.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351963536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.158 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds