Wall clock time and date at job start Tue Mar 31 2020 22:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31661 * 119.68217 * 2 1 4 4 C 1.32395 * 121.81629 * 180.28673 * 3 2 1 5 5 O 1.35520 * 119.52358 * 179.74550 * 4 3 2 6 6 C 1.39257 * 120.95068 * 359.47789 * 4 3 2 7 7 Br 1.89097 * 120.37567 * 180.23263 * 6 4 3 8 8 C 1.38016 * 119.25285 * 0.24734 * 6 4 3 9 9 C 1.39581 * 119.68005 * 179.76166 * 2 1 3 10 10 C 1.47514 * 120.50284 * 0.02562 * 9 2 1 11 11 O 1.21617 * 119.99508 * 308.49692 * 10 9 2 12 12 N 1.34773 * 120.00427 * 128.49760 * 10 9 2 13 13 C 1.36902 * 120.00328 * 184.60604 * 12 10 9 14 14 H 1.08002 * 120.00024 * 320.62063 * 13 12 10 15 15 C 1.39019 * 120.00075 * 140.61575 * 13 12 10 16 16 N 1.31389 * 120.00161 * 164.69918 * 15 13 12 17 17 Si 1.86796 * 120.00235 * 344.69594 * 15 13 12 18 18 H 1.48500 * 109.46845 * 91.39664 * 17 15 13 19 19 H 1.48497 * 109.47588 * 211.39796 * 17 15 13 20 20 H 1.48496 * 109.47159 * 331.40035 * 17 15 13 21 21 C 1.46506 * 119.99747 * 4.60407 * 12 10 9 22 22 C 1.47202 * 109.46654 * 96.64734 * 21 12 10 23 23 N 5.72060 * 127.63658 * 191.45847 * 2 1 3 24 24 H 1.08996 * 109.47324 * 273.14435 * 1 2 3 25 25 H 1.09003 * 109.47094 * 33.14298 * 1 2 3 26 26 H 1.09004 * 109.47089 * 153.13943 * 1 2 3 27 27 H 0.96700 * 114.00575 * 269.73039 * 5 4 3 28 28 H 1.07994 * 120.83278 * 180.02562 * 8 6 4 29 29 H 0.96998 * 120.00268 * 180.02562 * 16 15 13 30 30 H 1.08997 * 109.47031 * 216.64358 * 21 12 10 31 31 H 1.08992 * 109.47002 * 336.64532 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1438 0.0000 4 6 3.4820 1.1932 -0.0056 5 8 4.1054 2.3964 -0.0106 6 6 4.2422 0.0264 -0.0009 7 35 6.1311 0.1158 -0.0025 8 6 3.6015 -1.1960 0.0045 9 6 2.1982 -1.2127 0.0050 10 6 1.4647 -2.4925 0.0098 11 8 0.5932 -2.6908 0.8346 12 7 1.7603 -3.4421 -0.8998 13 6 1.0176 -4.5908 -0.9563 14 1 0.6832 -5.0630 -0.0444 15 6 0.6938 -5.1493 -2.1875 16 7 0.2527 -6.3852 -2.2526 17 14 0.8856 -4.1426 -3.7493 18 1 2.2395 -4.3641 -4.3177 19 1 -0.1407 -4.5614 -4.7374 20 1 0.7106 -2.7021 -3.4343 21 6 2.8764 -3.2450 -1.8281 22 6 4.0753 -3.9194 -1.3041 23 7 5.0003 -4.4398 -0.8999 24 1 -0.3634 0.0564 1.0261 25 1 -0.3633 0.8605 -0.5619 26 1 -0.3633 -0.9168 -0.4643 27 1 4.2864 2.7421 -0.8954 28 1 4.1659 -2.1167 0.0087 29 1 0.0271 -6.7751 -3.1117 30 1 2.6188 -3.6653 -2.8003 31 1 3.0764 -2.1789 -1.9346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351963536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:27 Heat of formation + Delta-G solvation = 0.794854 kcal Electronic energy + Delta-G solvation = -21346.636470 eV Core-core repulsion = 17868.543347 eV Total energy + Delta-G solvation = -3478.093123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.27792 -40.61588 -38.37873 -38.06997 -36.60961 -34.95748 -34.24112 -32.89341 -31.73902 -29.63596 -28.62007 -27.08691 -25.13881 -23.59881 -21.46265 -20.54749 -19.90737 -18.76392 -18.34869 -18.18405 -17.68425 -17.10978 -16.19696 -15.85848 -15.73691 -15.17290 -14.99505 -14.76653 -14.63097 -14.32682 -14.14021 -13.90837 -13.64315 -13.54418 -13.29452 -13.25287 -12.85780 -12.78999 -12.31286 -12.26040 -11.76486 -11.53100 -11.29469 -11.00713 -10.90964 -10.57679 -10.12258 -9.88524 -8.53165 -6.29643 -0.67740 -0.38667 0.26834 1.17556 1.27968 1.31866 1.41479 1.57167 1.62936 2.05445 2.15269 2.31735 2.48409 2.69838 3.01202 3.23324 3.29278 3.38687 3.79226 3.85551 3.93450 4.02688 4.21503 4.45067 4.69887 4.82863 4.84565 5.25192 5.37826 5.95087 6.24974 6.30668 6.34435 6.57405 6.71900 7.03574 7.50438 8.61985 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.005283 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.390946 B = 5298.627766 C = 6299.790844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.217 3.783 3 N -0.495 5.495 4 C 0.373 3.627 5 O -0.466 6.466 6 C -0.174 4.174 7 Br -0.002 7.002 8 C -0.013 4.013 9 C -0.186 4.186 10 C 0.527 3.473 11 O -0.566 6.566 12 N -0.458 5.458 13 C -0.338 4.338 14 H 0.057 0.943 15 C 0.019 3.981 16 N -0.901 5.901 17 Si 0.920 3.080 18 H -0.232 1.232 19 H -0.279 1.279 20 H -0.227 1.227 21 C 0.172 3.828 22 C 0.210 3.790 23 N -0.442 5.442 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.429 0.571 28 H 0.141 0.859 29 H 0.285 0.715 30 H 0.113 0.887 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 18.851 -4.228 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 N -0.215 5.215 4 C 0.190 3.810 5 O -0.277 6.277 6 C -0.257 4.257 7 Br 0.082 6.918 8 C -0.041 4.041 9 C -0.193 4.193 10 C 0.316 3.684 11 O -0.447 6.447 12 N -0.180 5.180 13 C -0.466 4.466 14 H 0.075 0.925 15 C -0.186 4.186 16 N -0.537 5.537 17 Si 0.742 3.258 18 H -0.157 1.157 19 H -0.205 1.205 20 H -0.149 1.149 21 C 0.047 3.953 22 C -0.109 4.109 23 N -0.120 5.120 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.090 0.910 27 H 0.293 0.707 28 H 0.159 0.841 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.703 18.595 -2.722 21.627 hybrid contribution -0.377 -1.161 -0.895 1.514 sum 10.326 17.433 -3.617 20.583 Atomic orbital electron populations 1.20905 0.86143 1.04493 1.04779 1.21384 0.97983 0.84912 0.87829 1.67323 1.08675 1.28955 1.16516 1.18982 0.86250 0.85245 0.90512 1.84704 1.75949 1.31022 1.36073 1.22945 0.93814 0.95225 1.13757 1.96773 0.98446 1.98955 1.97603 1.21738 0.92757 0.97803 0.91785 1.20859 0.93869 0.95370 1.09160 1.18177 0.83769 0.82807 0.83672 1.90706 1.34922 1.80222 1.38854 1.43472 1.25471 1.16667 1.32386 1.18627 1.33102 1.00351 0.94478 0.92479 1.26221 0.94383 0.96018 1.01952 1.69776 1.41839 1.13653 1.28414 0.86243 0.79837 0.81634 0.78122 1.15693 1.20535 1.14936 1.19898 0.79218 1.01765 0.94459 1.29820 0.94068 0.93377 0.93615 1.81098 1.13307 1.09143 1.08494 0.88831 0.87436 0.90957 0.70708 0.84100 0.90547 0.87000 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 9.34 71.24 0.67 -2.18 16 2 C 0.22 6.32 6.82 42.91 0.29 6.61 16 3 N -0.49 -12.95 10.28 -295.78 -3.04 -15.99 16 4 C 0.37 8.62 7.74 84.85 0.66 9.27 16 5 O -0.47 -8.09 12.89 -88.23 -1.14 -9.22 16 6 C -0.17 -4.23 6.25 22.46 0.14 -4.09 16 7 Br 0.00 -0.05 33.18 -20.37 -0.68 -0.72 16 8 C -0.01 -0.38 7.47 22.73 0.17 -0.21 16 9 C -0.19 -6.07 4.83 -20.00 -0.10 -6.16 16 10 C 0.53 22.04 6.15 86.69 0.53 22.57 16 11 O -0.57 -27.99 15.68 -4.08 -0.06 -28.05 16 12 N -0.46 -19.72 2.16 -649.06 -1.40 -21.12 16 13 C -0.34 -17.83 9.34 84.09 0.79 -17.05 16 14 H 0.06 3.59 7.91 -2.91 -0.02 3.57 16 15 C 0.02 0.93 5.41 84.95 0.46 1.39 16 16 N -0.90 -49.53 13.96 21.68 0.30 -49.23 16 17 Si 0.92 34.31 24.80 68.60 1.70 36.02 16 18 H -0.23 -7.39 6.65 99.48 0.66 -6.73 16 19 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.23 -7.44 7.10 99.48 0.71 -6.73 16 21 C 0.17 5.82 4.40 84.57 0.37 6.19 16 22 C 0.21 7.56 13.34 89.45 1.19 8.75 16 23 N -0.44 -16.99 18.54 20.00 0.37 -16.62 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 2.25 6.60 -2.38 -0.02 2.23 16 27 H 0.43 2.93 9.06 -74.06 -0.67 2.26 16 28 H 0.14 4.25 5.27 -2.91 -0.02 4.24 16 29 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.11 3.71 2.57 -2.39 -0.01 3.71 16 31 H 0.15 3.83 5.50 -2.39 -0.01 3.81 16 Total: -1.00 -66.89 294.94 1.75 -65.14 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.52 Total: 14.69 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 5.17 Total: 25.11 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -3.77 Total: -102.96 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.20 Total: -37.28 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 1.70 Total: 36.02 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.68 Total: -0.72 kcal Total: -66.89 1.75 -65.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351963536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.935 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds