Wall clock time and date at job start Tue Mar 31 2020 22:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47075 * 2 1 4 4 C 1.46964 * 110.99745 * 169.99957 * 3 2 1 5 5 C 1.53047 * 109.36414 * 183.18682 * 4 3 2 6 6 N 1.46953 * 109.36572 * 301.59802 * 5 4 3 7 7 C 1.46896 * 111.00268 * 183.18923 * 6 5 4 8 8 H 1.08999 * 110.88502 * 298.05043 * 7 6 5 9 9 C 1.55167 * 111.00248 * 61.92635 * 7 6 5 10 10 C 1.54319 * 102.93813 * 153.61570 * 9 7 6 11 11 N 1.47028 * 107.27622 * 337.80714 * 10 9 7 12 12 C 1.34776 * 125.65000 * 178.90162 * 11 10 9 13 13 O 1.21583 * 119.99960 * 180.02562 * 12 11 10 14 14 N 1.34780 * 119.99802 * 0.02676 * 12 11 10 15 15 C 1.46505 * 119.99646 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46864 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46883 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46903 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00023 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00025 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00327 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47639 * 90.00059 * 22 20 18 24 24 H 1.48499 * 109.47229 * 210.00294 * 22 20 18 25 25 H 1.48504 * 109.46787 * 329.99987 * 22 20 18 26 26 C 1.47416 * 108.69995 * 359.17231 * 11 10 9 27 27 C 1.46952 * 110.88166 * 59.31937 * 6 5 4 28 28 C 1.46955 * 110.99964 * 293.79315 * 3 2 1 29 29 H 1.09002 * 109.46915 * 300.00429 * 1 2 3 30 30 H 1.09008 * 109.46775 * 59.99811 * 1 2 3 31 31 H 1.08992 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46915 * 239.99571 * 2 1 3 33 33 H 1.08998 * 109.46801 * 120.00076 * 2 1 3 34 34 H 1.08997 * 109.48699 * 63.21599 * 4 3 2 35 35 H 1.08998 * 109.48552 * 303.15926 * 4 3 2 36 36 H 1.09003 * 109.48559 * 181.62905 * 5 4 3 37 37 H 1.09003 * 109.48750 * 61.56752 * 5 4 3 38 38 H 1.08999 * 110.71743 * 35.25340 * 9 7 6 39 39 H 1.09003 * 110.71837 * 271.97678 * 9 7 6 40 40 H 1.08999 * 109.88402 * 218.38674 * 10 9 7 41 41 H 1.09005 * 109.88394 * 97.22425 * 10 9 7 42 42 H 0.96998 * 120.00612 * 0.02562 * 14 12 11 43 43 H 1.08995 * 109.46814 * 60.00555 * 15 14 12 44 44 H 1.08999 * 109.47170 * 299.99937 * 15 14 12 45 45 H 1.08998 * 109.47054 * 60.00013 * 16 15 14 46 46 H 1.09005 * 109.46864 * 300.00267 * 16 15 14 47 47 H 1.08998 * 109.47660 * 59.99899 * 17 16 15 48 48 H 1.08999 * 109.46765 * 299.99466 * 17 16 15 49 49 H 0.97008 * 119.99715 * 359.97438 * 21 20 18 50 50 H 1.08994 * 110.37217 * 142.74086 * 26 11 10 51 51 H 1.09004 * 110.36538 * 265.05973 * 26 11 10 52 52 H 1.09007 * 109.48967 * 60.64903 * 27 6 5 53 53 H 1.08999 * 109.49244 * 180.71040 * 27 6 5 54 54 H 1.08992 * 109.49017 * 296.78379 * 28 3 2 55 55 H 1.08999 * 109.48469 * 56.85024 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4691 1.4311 0.2383 5 6 3.9255 2.8902 0.3099 6 7 3.5791 3.5712 -0.9454 7 6 4.0688 4.9562 -0.9455 8 1 3.6053 5.5323 -0.1446 9 6 5.6162 4.9989 -0.8375 10 6 5.9730 6.3382 -1.5160 11 7 4.8524 6.6923 -2.3996 12 6 4.7693 7.8050 -3.1554 13 8 3.7906 7.9957 -3.8511 14 7 5.7711 8.7065 -3.1400 15 6 5.6810 9.9158 -3.9620 16 6 6.9393 10.7631 -3.7624 17 6 6.8449 12.0264 -4.6204 18 6 8.0839 12.8612 -4.4233 19 1 8.8612 12.5243 -3.7534 20 6 8.2257 14.0547 -5.0989 21 7 7.2795 14.4648 -5.9151 22 14 9.7618 15.0892 -4.8552 23 1 10.7903 14.6902 -5.8492 24 1 9.4265 16.5241 -5.0386 25 1 10.2899 14.8756 -3.4837 26 6 3.8319 5.6317 -2.3168 27 6 2.1298 3.5251 -1.1837 28 6 1.6734 2.0660 -1.2553 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9879 0.9274 -0.5773 35 1 3.6990 0.9315 1.1793 36 1 5.0048 2.9267 0.4577 37 1 3.4271 3.3866 1.1425 38 1 6.0635 4.1629 -1.3752 39 1 5.9300 4.9998 0.2064 40 1 6.8854 6.2256 -2.1015 41 1 6.1081 7.1122 -0.7604 42 1 6.5521 8.5543 -2.5853 43 1 4.8041 10.4916 -3.6662 44 1 5.5947 9.6359 -5.0119 45 1 7.8159 10.1870 -4.0584 46 1 7.0260 11.0430 -2.7125 47 1 5.9682 12.6023 -4.3240 48 1 6.7580 11.7467 -5.6703 49 1 6.4819 13.9273 -6.0419 50 1 2.8319 6.0631 -2.3599 51 1 3.9693 4.9094 -3.1215 52 1 1.6109 4.0289 -0.3681 53 1 1.8999 4.0247 -2.1248 54 1 2.1718 1.5695 -2.0878 55 1 0.5941 2.0294 -1.4031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358833221.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:23 Heat of formation + Delta-G solvation = -52.261285 kcal Electronic energy + Delta-G solvation = -29331.158174 eV Core-core repulsion = 25401.367020 eV Total energy + Delta-G solvation = -3929.791154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53919 -40.44325 -38.76476 -37.14787 -36.29522 -35.45915 -33.22182 -32.29790 -32.18920 -30.85413 -29.65749 -28.08799 -26.47044 -25.25965 -24.78620 -23.58274 -22.77356 -22.56052 -21.58844 -20.93260 -20.76673 -19.20933 -18.91922 -18.03546 -17.11836 -17.05000 -16.43398 -16.19145 -15.91673 -15.82326 -15.71865 -15.62635 -15.53559 -15.34590 -14.99778 -14.75890 -14.55371 -14.16193 -14.04607 -13.78777 -13.60031 -13.50420 -13.27208 -13.04561 -12.87839 -12.61138 -12.58991 -12.55484 -12.35290 -12.21292 -12.04224 -11.92688 -11.87320 -11.85860 -11.80660 -11.58467 -11.49033 -11.38450 -10.69716 -10.53980 -10.34325 -9.60956 -9.48269 -9.27745 -8.68195 -6.39304 1.42661 1.54464 1.63934 1.81143 2.00018 2.58400 2.72739 2.91919 2.97815 3.17353 3.38692 3.60585 3.86710 3.99195 4.01514 4.02467 4.09398 4.15606 4.21508 4.25950 4.32616 4.34374 4.40370 4.45023 4.52798 4.54447 4.56654 4.62687 4.73071 4.77043 4.78749 4.79980 4.82323 4.88261 4.90643 4.94652 4.95771 5.00916 5.06154 5.09834 5.16216 5.20715 5.31823 5.34899 5.41571 5.47075 5.88433 5.93162 5.96240 5.98924 6.12789 6.15948 6.19324 6.56806 6.86941 7.42742 7.43899 8.72708 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.040086 B = 0.001502 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.334008 B =18639.887709 C =19209.322351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 N -0.552 5.552 4 C 0.058 3.942 5 C 0.060 3.940 6 N -0.531 5.531 7 C 0.079 3.921 8 H 0.057 0.943 9 C -0.107 4.107 10 C 0.092 3.908 11 N -0.636 5.636 12 C 0.714 3.286 13 O -0.640 6.640 14 N -0.727 5.727 15 C 0.150 3.850 16 C -0.093 4.093 17 C 0.007 3.993 18 C -0.617 4.617 19 H 0.058 0.942 20 C -0.042 4.042 21 N -0.940 5.940 22 Si 1.122 2.878 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.135 3.865 27 C 0.055 3.945 28 C 0.060 3.940 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.410 0.590 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.068 0.932 47 H -0.010 1.010 48 H -0.010 1.010 49 H 0.255 0.745 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.037 0.963 53 H 0.076 0.924 54 H 0.035 0.965 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -33.709 18.455 39.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.277 5.277 4 C -0.070 4.070 5 C -0.068 4.068 6 N -0.256 5.256 7 C -0.030 4.030 8 H 0.075 0.925 9 C -0.145 4.145 10 C -0.030 4.030 11 N -0.374 5.374 12 C 0.416 3.584 13 O -0.522 6.522 14 N -0.383 5.383 15 C 0.025 3.975 16 C -0.131 4.131 17 C -0.031 4.031 18 C -0.655 4.655 19 H 0.077 0.923 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.943 3.057 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.189 1.189 26 C 0.012 3.988 27 C -0.073 4.073 28 C -0.068 4.068 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.247 0.753 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.008 0.992 48 H 0.008 0.992 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.056 0.944 53 H 0.095 0.905 54 H 0.054 0.946 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.740 -32.123 17.462 37.178 hybrid contribution -1.019 -1.133 0.088 1.527 sum -7.759 -33.256 17.551 38.395 Atomic orbital electron populations 1.21779 0.94441 1.02184 1.02025 1.22095 0.96485 0.87998 1.01080 1.62249 1.14421 1.16617 1.34458 1.22186 0.86981 0.96241 1.01576 1.22215 1.01727 0.93577 0.89292 1.62155 1.13914 1.13909 1.35625 1.22590 0.96947 0.88586 0.94883 0.92494 1.22661 0.93034 0.96057 1.02732 1.22315 0.89283 0.98289 0.93122 1.47459 1.23077 1.20299 1.46602 1.15634 0.82933 0.79716 0.80140 1.90884 1.34585 1.78972 1.47745 1.44991 1.21796 1.21792 1.49686 1.21094 0.98534 0.84016 0.93839 1.21468 0.95710 0.95319 1.00629 1.19123 0.96079 0.93591 0.94266 1.22499 1.05513 1.08006 1.29492 0.92349 1.27513 1.05275 0.98454 0.92669 1.70892 1.09024 1.41023 1.36860 0.82875 0.71178 0.74329 0.77292 1.19793 1.21107 1.18937 1.21941 0.90960 0.87944 0.97988 1.22181 0.87388 0.96775 1.01002 1.22134 1.00965 0.93317 0.90369 0.92466 0.92983 0.91182 0.95005 0.89977 0.94418 0.88896 0.88210 0.94336 0.88803 0.87419 0.90069 0.90176 0.75296 0.93431 0.93455 0.91317 0.91332 0.99191 0.99207 0.93601 0.92546 0.91303 0.94442 0.90514 0.94629 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.85 71.98 0.71 -0.55 16 2 C 0.05 0.48 5.68 86.30 0.49 0.97 16 3 N -0.55 -6.63 4.71 -895.71 -4.22 -10.85 16 4 C 0.06 0.58 5.61 86.31 0.48 1.07 16 5 C 0.06 0.60 5.44 86.31 0.47 1.07 16 6 N -0.53 -7.01 4.61 -862.80 -3.98 -10.99 16 7 C 0.08 1.12 2.69 46.24 0.12 1.24 16 8 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 9 C -0.11 -1.05 5.35 31.78 0.17 -0.88 16 10 C 0.09 1.31 6.15 86.73 0.53 1.84 16 11 N -0.64 -15.10 3.33 -830.21 -2.76 -17.86 16 12 C 0.71 23.53 8.49 179.05 1.52 25.05 16 13 O -0.64 -27.30 16.60 -3.98 -0.07 -27.37 16 14 N -0.73 -21.93 5.52 -478.52 -2.64 -24.57 16 15 C 0.15 5.55 5.67 86.38 0.49 6.04 16 16 C -0.09 -3.69 5.27 30.60 0.16 -3.52 16 17 C 0.01 0.37 4.28 29.85 0.13 0.50 16 18 C -0.62 -35.05 9.11 25.60 0.23 -34.81 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 20 C -0.04 -2.45 5.46 84.65 0.46 -1.99 16 21 N -0.94 -59.39 13.65 21.45 0.29 -59.10 16 22 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 C 0.14 2.85 5.34 86.78 0.46 3.32 16 27 C 0.05 0.79 5.44 86.31 0.47 1.26 16 28 C 0.06 0.78 5.41 86.31 0.47 1.25 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.48 6.49 -2.38 -0.02 0.47 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.03 0.32 8.12 -2.39 -0.02 0.30 16 33 H 0.08 0.64 8.03 -2.39 -0.02 0.62 16 34 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.68 8.07 -2.39 -0.02 0.66 16 36 H 0.10 0.67 7.04 -2.39 -0.02 0.65 16 37 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.57 8.02 -2.39 -0.02 0.55 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.41 9.57 7.46 -92.71 -0.69 8.88 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 47 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 48 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 49 H 0.25 16.38 7.22 -92.70 -0.67 15.71 16 50 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 51 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 53 H 0.08 1.19 7.00 -2.39 -0.02 1.17 16 54 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 55 H 0.09 1.03 6.34 -2.39 -0.02 1.01 16 Total: -1.00 -75.58 422.41 -3.70 -79.28 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.25 Total: 17.53 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 7.37 Total: 1.85 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -13.31 Total: -123.38 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.37 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -75.58 -3.70 -79.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358833221.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.018 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds