Wall clock time and date at job start Tue Mar 31 2020 22:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 111.00086 * 2 1 4 4 C 1.46899 * 111.00005 * 123.95101 * 2 1 3 5 5 C 1.52997 * 109.46943 * 66.04601 * 4 2 1 6 6 C 1.52996 * 109.47121 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47391 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00064 * 270.00070 * 7 6 5 9 9 C 1.50706 * 109.47158 * 89.99489 * 8 7 6 10 10 H 1.07997 * 119.99866 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00017 * 179.97438 * 9 8 7 12 12 N 1.31522 * 120.00168 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00033 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47225 * 90.00373 * 13 11 9 15 15 H 1.48509 * 109.47236 * 210.00123 * 13 11 9 16 16 H 1.48502 * 109.47199 * 329.99703 * 13 11 9 17 17 C 1.34783 * 120.00322 * 89.99638 * 7 6 5 18 18 O 1.21279 * 119.99244 * 0.02562 * 17 7 6 19 19 C 1.50697 * 120.00308 * 180.02562 * 17 7 6 20 20 H 1.09002 * 109.10916 * 303.54593 * 19 17 7 21 21 C 1.53509 * 109.11129 * 62.67148 * 19 17 7 22 22 N 1.44569 * 109.41749 * 125.08946 * 21 19 17 23 23 C 1.46923 * 110.58610 * 55.50662 * 22 21 19 24 24 C 1.52853 * 109.52492 * 294.66075 * 23 22 21 25 25 N 1.43337 * 109.11443 * 184.46153 * 19 17 7 26 26 C 1.44123 * 119.24756 * 313.65529 * 25 19 17 27 27 C 1.53240 * 110.21998 * 262.09355 * 26 25 19 28 28 C 1.43884 * 117.17639 * 281.62716 * 22 21 19 29 29 H 1.09001 * 109.47188 * 296.05218 * 1 2 3 30 30 H 1.09005 * 109.46463 * 56.04511 * 1 2 3 31 31 H 1.08995 * 109.46783 * 176.04681 * 1 2 3 32 32 H 1.08997 * 109.47079 * 183.95459 * 3 2 1 33 33 H 1.09001 * 109.46871 * 303.95104 * 3 2 1 34 34 H 1.09000 * 109.47092 * 63.94807 * 3 2 1 35 35 H 1.08997 * 109.47068 * 306.04910 * 4 2 1 36 36 H 1.09003 * 109.47409 * 186.04699 * 4 2 1 37 37 H 1.09004 * 109.47589 * 299.99956 * 5 4 2 38 38 H 1.08997 * 109.46986 * 60.00259 * 5 4 2 39 39 H 1.09003 * 109.47260 * 300.00116 * 6 5 4 40 40 H 1.08999 * 109.47758 * 60.00044 * 6 5 4 41 41 H 1.08999 * 109.47084 * 209.99552 * 8 7 6 42 42 H 1.09004 * 109.47103 * 330.00110 * 8 7 6 43 43 H 0.96993 * 119.99991 * 180.02562 * 12 11 9 44 44 H 1.08999 * 109.48339 * 245.07134 * 21 19 17 45 45 H 1.09002 * 109.48396 * 5.10532 * 21 19 17 46 46 H 1.08998 * 109.46637 * 54.67444 * 23 22 21 47 47 H 1.09000 * 109.46498 * 174.65469 * 23 22 21 48 48 H 1.09000 * 109.40172 * 132.67947 * 24 23 22 49 49 H 1.09001 * 109.40513 * 252.43958 * 24 23 22 50 50 H 1.08998 * 109.34773 * 22.32431 * 26 25 19 51 51 H 1.09007 * 109.34731 * 142.01406 * 26 25 19 52 52 H 1.09005 * 110.01734 * 180.89470 * 27 26 25 53 53 H 1.08997 * 110.01850 * 302.23290 * 27 26 25 54 54 H 1.09003 * 108.80601 * 217.71519 * 28 22 21 55 55 H 1.09005 * 108.80323 * 335.96500 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2425 0.9704 6 6 2.1792 -3.0402 2.1555 7 7 1.8312 -4.4542 1.9952 8 6 0.5743 -4.9663 2.5466 9 6 -0.5156 -4.8410 1.5134 10 1 -0.2940 -4.4222 0.5429 11 6 -1.7953 -5.2620 1.8067 12 7 -2.0650 -5.7725 2.9884 13 14 -3.1460 -5.1074 0.5257 14 1 -3.1940 -6.3441 -0.2949 15 1 -4.4524 -4.9130 1.2047 16 1 -2.8658 -3.9421 -0.3511 17 6 2.6674 -5.2840 1.3402 18 8 3.7081 -4.8600 0.8841 19 6 2.3091 -6.7383 1.1748 20 1 2.1363 -7.1773 2.1574 21 6 1.0240 -6.8479 0.3424 22 7 1.2605 -7.7070 -0.7960 23 6 1.7615 -9.0173 -0.3591 24 6 3.1369 -8.8490 0.2861 25 7 3.3990 -7.4211 0.5419 26 6 4.0215 -6.8317 -0.6167 27 6 3.4550 -7.4548 -1.8969 28 6 1.9655 -7.1378 -1.9137 29 1 -0.3633 0.4513 0.9232 30 1 -0.3632 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5899 1.9163 -0.8525 34 1 1.7044 1.8724 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0798 -0.6610 1.1757 37 1 0.5472 -2.3475 0.9324 38 1 2.0659 -2.6213 0.0452 39 1 3.2635 -2.9353 2.1941 40 1 1.7445 -2.6614 3.0806 41 1 0.6976 -6.0144 2.8195 42 1 0.3040 -4.3898 3.4314 43 1 -2.9652 -6.0690 3.1946 44 1 0.2279 -7.2690 0.9564 45 1 0.7301 -5.8573 -0.0047 46 1 1.0704 -9.4471 0.3659 47 1 1.8432 -9.6805 -1.2203 48 1 3.1644 -9.3967 1.2281 49 1 3.9016 -9.2433 -0.3832 50 1 3.8309 -5.7585 -0.6224 51 1 5.0967 -7.0072 -0.5774 52 1 3.9393 -7.0180 -2.7704 53 1 3.6084 -8.5338 -1.8863 54 1 1.5339 -7.5263 -2.8362 55 1 1.8363 -6.0556 -1.8964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362411907.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:00 Heat of formation + Delta-G solvation = 0.602369 kcal Electronic energy + Delta-G solvation = -33135.668197 eV Core-core repulsion = 29208.169384 eV Total energy + Delta-G solvation = -3927.498814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53407 -40.22990 -38.61884 -37.09131 -35.05372 -34.81205 -34.21584 -32.92932 -31.86191 -29.30283 -28.49857 -27.81232 -26.56986 -26.42456 -24.86181 -24.80059 -23.67161 -21.84642 -21.52577 -20.70129 -19.55951 -18.57635 -18.09354 -18.01298 -17.37136 -16.95159 -16.56298 -16.39178 -16.16094 -15.89435 -15.76097 -15.47413 -15.18404 -14.73426 -14.52511 -14.42241 -14.14973 -14.06717 -13.81291 -13.57203 -13.36948 -13.27099 -13.14374 -13.05760 -12.99601 -12.85575 -12.73546 -12.64359 -12.55542 -12.48719 -12.35912 -12.24293 -12.19184 -11.89134 -11.72289 -11.50223 -11.41049 -11.27936 -10.55584 -10.17693 -9.56432 -9.42442 -9.31546 -8.51319 -8.15173 -6.22839 1.40775 1.45710 1.50455 1.70050 2.18805 2.44355 2.79700 3.03522 3.14635 3.28716 3.59325 3.83064 3.95585 3.97342 3.99613 4.08496 4.15013 4.23736 4.27796 4.41001 4.43707 4.47263 4.49742 4.50730 4.61349 4.63546 4.66083 4.71469 4.74775 4.76773 4.80875 4.87551 4.88409 4.94052 4.98450 5.01364 5.02106 5.07187 5.11143 5.17082 5.22129 5.27202 5.33491 5.39670 5.71309 5.87112 6.04013 6.08530 6.09550 6.13310 6.35404 6.44871 6.53971 6.61691 6.85179 7.31967 7.46100 8.90727 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.005219 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.905348 B = 5363.375045 C = 7067.268168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.067 3.933 5 C -0.112 4.112 6 C 0.125 3.875 7 N -0.596 5.596 8 C 0.252 3.748 9 C -0.514 4.514 10 H 0.053 0.947 11 C 0.034 3.966 12 N -0.916 5.916 13 Si 0.935 3.065 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.517 3.483 18 O -0.571 6.571 19 C 0.079 3.921 20 H 0.091 0.909 21 C 0.078 3.922 22 N -0.585 5.585 23 C 0.041 3.959 24 C 0.038 3.962 25 N -0.570 5.570 26 C 0.061 3.939 27 C -0.174 4.174 28 C 0.082 3.918 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.028 0.972 42 H 0.022 0.978 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.086 0.914 53 H 0.089 0.911 54 H 0.076 0.924 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 1.766 -5.689 9.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.290 5.290 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.151 4.151 6 C 0.002 3.998 7 N -0.325 5.325 8 C 0.131 3.869 9 C -0.553 4.553 10 H 0.071 0.929 11 C -0.166 4.166 12 N -0.556 5.556 13 Si 0.762 3.238 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.305 3.695 18 O -0.453 6.453 19 C -0.035 4.035 20 H 0.109 0.891 21 C -0.052 4.052 22 N -0.308 5.308 23 C -0.087 4.087 24 C -0.090 4.090 25 N -0.293 5.293 26 C -0.066 4.066 27 C -0.214 4.214 28 C -0.045 4.045 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.115 0.885 50 H 0.096 0.904 51 H 0.082 0.918 52 H 0.104 0.896 53 H 0.107 0.893 54 H 0.095 0.905 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.168 1.718 -6.090 10.332 hybrid contribution -1.361 0.622 0.260 1.519 sum 6.807 2.340 -5.830 9.263 Atomic orbital electron populations 1.22400 0.87216 1.01890 1.00932 1.61944 1.08435 1.15027 1.43589 1.22419 1.01038 0.87619 1.01090 1.21973 1.00239 0.92424 0.91464 1.21732 1.01091 0.94469 0.97764 1.21306 1.00050 0.80110 0.98343 1.48208 1.21227 1.09010 1.54086 1.19177 0.79454 0.94581 0.93701 1.21391 0.93651 1.40811 0.99440 0.92928 1.25329 0.99906 0.94961 0.96414 1.69982 1.21572 1.42323 1.21686 0.85901 0.79456 0.78545 0.79922 1.20465 1.21117 1.19793 1.20664 0.82774 0.88703 0.77319 1.90458 1.26264 1.78569 1.50056 1.21175 0.91636 0.91164 0.99535 0.89128 1.22376 0.94726 0.97567 0.90554 1.57693 1.56602 1.06082 1.10374 1.22514 0.95507 0.89933 1.00767 1.22800 0.97759 0.86879 1.01561 1.57056 1.34076 1.03547 1.34665 1.21913 0.97702 1.00834 0.86189 1.22955 0.96345 1.02674 0.99446 1.21203 0.92478 0.97771 0.93098 0.95183 0.90297 0.92850 0.90826 0.90457 0.95113 0.94110 0.90175 0.92303 0.94067 0.90958 0.90135 0.95459 0.95945 0.92588 0.91001 0.90887 0.91031 0.88731 0.90627 0.88468 0.90387 0.91791 0.89567 0.89291 0.90549 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.32 127.69 1.19 1.83 16 2 N -0.57 -15.53 5.02 -948.83 -4.76 -20.29 16 3 C 0.03 0.54 9.57 127.69 1.22 1.76 16 4 C 0.07 1.91 4.96 86.30 0.43 2.33 16 5 C -0.11 -3.91 5.46 30.59 0.17 -3.74 16 6 C 0.13 4.49 5.45 86.38 0.47 4.96 16 7 N -0.60 -24.42 2.45 -826.14 -2.02 -26.44 16 8 C 0.25 11.42 4.76 85.63 0.41 11.83 16 9 C -0.51 -24.86 5.71 25.60 0.15 -24.71 16 10 H 0.05 2.65 6.45 -2.91 -0.02 2.64 16 11 C 0.03 1.73 5.46 84.65 0.46 2.19 16 12 N -0.92 -48.45 13.29 21.44 0.28 -48.16 16 13 Si 0.93 41.40 29.54 68.60 2.03 43.42 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 C 0.52 21.49 6.49 87.66 0.57 22.06 16 18 O -0.57 -25.19 12.77 -3.03 -0.04 -25.23 16 19 C 0.08 3.02 2.07 45.00 0.09 3.11 16 20 H 0.09 3.58 7.20 -2.39 -0.02 3.56 16 21 C 0.08 3.10 3.58 86.91 0.31 3.41 16 22 N -0.59 -19.84 4.37 -910.85 -3.98 -23.82 16 23 C 0.04 1.12 5.51 86.25 0.47 1.60 16 24 C 0.04 1.01 5.71 86.16 0.49 1.50 16 25 N -0.57 -19.23 4.14 -888.69 -3.67 -22.91 16 26 C 0.06 1.97 4.98 86.90 0.43 2.40 16 27 C -0.17 -4.52 5.75 30.44 0.18 -4.35 16 28 C 0.08 2.53 5.74 86.63 0.50 3.02 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.82 8.12 -2.38 -0.02 1.81 16 31 H 0.05 1.69 6.47 -2.39 -0.02 1.68 16 32 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 33 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 36 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 37 H 0.06 2.32 5.68 -2.39 -0.01 2.30 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.55 7.42 -2.39 -0.02 2.53 16 40 H 0.08 2.68 7.89 -2.39 -0.02 2.66 16 41 H 0.03 1.31 5.99 -2.39 -0.01 1.29 16 42 H 0.02 1.08 7.89 -2.38 -0.02 1.06 16 43 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 44 H 0.07 3.19 7.47 -2.39 -0.02 3.17 16 45 H 0.07 3.31 4.61 -2.39 -0.01 3.30 16 46 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 47 H 0.09 2.11 7.90 -2.39 -0.02 2.09 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 2.14 6.21 -2.39 -0.01 2.13 16 50 H 0.08 3.09 4.83 -11.61 -0.06 3.04 16 51 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 52 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 53 H 0.09 1.98 5.30 -2.39 -0.01 1.96 16 54 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 55 H 0.04 1.31 7.64 -2.38 -0.02 1.29 16 Total: -1.00 -57.27 396.33 -3.82 -61.08 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.81 Total: 33.13 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: 7.54 Total: 29.21 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -14.16 Total: -141.62 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.23 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -57.27 -3.82 -61.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362411907.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.685 kcal (2) G-P(sol) polarization free energy of solvation -57.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds