Wall clock time and date at job start Tue Mar 31 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46845 * 110.99878 * 2 1 4 4 C 1.53036 * 109.52625 * 185.83843 * 3 2 1 5 5 C 1.53119 * 109.27662 * 300.82002 * 4 3 2 6 6 N 1.46896 * 109.52410 * 177.55792 * 5 4 3 7 7 C 1.48529 * 111.00073 * 57.60477 * 6 5 4 8 8 C 1.54943 * 103.23110 * 159.72217 * 7 6 5 9 9 C 1.54593 * 102.91873 * 322.58517 * 8 7 6 10 10 H 1.09005 * 110.30819 * 263.04149 * 9 8 7 11 11 N 1.46494 * 110.31183 * 140.87088 * 9 8 7 12 12 C 1.34783 * 119.99739 * 89.28079 * 11 9 8 13 13 O 1.21582 * 120.00315 * 0.02562 * 12 11 9 14 14 N 1.34782 * 119.99815 * 179.97438 * 12 11 9 15 15 C 1.46496 * 119.99873 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47248 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47161 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47137 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99594 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00406 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00014 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46779 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47271 * 119.99673 * 22 20 18 25 25 H 1.48491 * 109.47269 * 240.00285 * 22 20 18 26 26 C 1.47906 * 111.00163 * 174.99787 * 6 5 4 27 27 C 1.53119 * 109.16403 * 57.64892 * 5 4 3 28 28 C 1.46851 * 111.00012 * 124.20457 * 2 1 3 29 29 H 1.08994 * 109.46850 * 60.00278 * 1 2 3 30 30 H 1.09001 * 109.46664 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47456 * 300.00484 * 1 2 3 32 32 H 1.08997 * 109.46715 * 65.82177 * 3 2 1 33 33 H 1.09007 * 109.45500 * 305.84811 * 3 2 1 34 34 H 1.08995 * 109.50557 * 180.87997 * 4 3 2 35 35 H 1.09002 * 109.50354 * 60.75464 * 4 3 2 36 36 H 1.09000 * 109.52445 * 297.68268 * 5 4 3 37 37 H 1.08995 * 110.67216 * 41.28703 * 7 6 5 38 38 H 1.09004 * 110.66395 * 278.15418 * 7 6 5 39 39 H 1.08999 * 110.72722 * 204.22642 * 8 7 6 40 40 H 1.09004 * 110.87493 * 81.01227 * 8 7 6 41 41 H 0.96999 * 120.00588 * 269.28329 * 11 9 8 42 42 H 0.97004 * 119.99793 * 0.02562 * 14 12 11 43 43 H 1.08999 * 109.47412 * 300.00511 * 15 14 12 44 44 H 1.09000 * 109.47144 * 60.00074 * 15 14 12 45 45 H 1.08999 * 109.47159 * 300.00455 * 16 15 14 46 46 H 1.09000 * 109.47160 * 59.99873 * 16 15 14 47 47 H 1.08999 * 109.47438 * 300.00262 * 17 16 15 48 48 H 1.09007 * 109.47297 * 60.00254 * 17 16 15 49 49 H 0.97001 * 120.00601 * 180.02562 * 21 20 18 50 50 H 1.08998 * 109.91583 * 94.80499 * 26 6 5 51 51 H 1.09004 * 109.91554 * 333.51082 * 26 6 5 52 52 H 1.09008 * 109.49944 * 62.29071 * 27 5 4 53 53 H 1.08997 * 109.50521 * 182.40463 * 27 5 4 54 54 H 1.09005 * 109.46338 * 294.18168 * 28 2 1 55 55 H 1.09002 * 109.45886 * 54.14448 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 7 5.5756 0.4488 0.8476 7 6 6.1856 1.8009 0.7715 8 6 7.6707 1.5405 1.1284 9 6 7.5777 0.4510 2.2212 10 1 7.6331 0.9030 3.2116 11 7 8.6485 -0.5339 2.0499 12 6 9.8401 -0.3452 2.6509 13 8 10.0261 0.6422 3.3355 14 7 10.8251 -1.2516 2.4937 15 6 12.1205 -1.0463 3.1464 16 6 13.0526 -2.2113 2.8078 17 6 14.4052 -1.9972 3.4900 18 6 15.3231 -3.1450 3.1570 19 1 14.9765 -3.9468 2.5219 20 6 16.6053 -3.1716 3.6631 21 7 17.0272 -2.1955 4.4369 22 14 17.7434 -4.5940 3.2497 23 1 17.0337 -5.5557 2.3684 24 1 18.9478 -4.0776 2.5512 25 1 18.1531 -5.2800 4.5014 26 6 6.2034 -0.2118 2.0125 27 6 3.5181 -0.8713 1.0211 28 6 1.9953 -0.7707 1.1338 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7325 1.8609 0.9375 33 1 1.5634 1.9256 -0.8331 34 1 3.9098 2.3513 -0.1310 35 1 3.7814 0.8568 -1.0905 36 1 3.8896 1.0362 1.9560 37 1 5.7272 2.4713 1.4985 38 1 6.0976 2.2065 -0.2364 39 1 8.1368 2.4435 1.5226 40 1 8.2195 1.1717 0.2618 41 1 8.5001 -1.3218 1.5040 42 1 10.6766 -2.0395 1.9477 43 1 12.5615 -0.1141 2.7934 44 1 11.9793 -0.9954 4.2260 45 1 12.6117 -3.1437 3.1604 46 1 13.1937 -2.2618 1.7281 47 1 14.8463 -1.0647 3.1377 48 1 14.2637 -1.9470 4.5697 49 1 17.9295 -2.2139 4.7926 50 1 6.3310 -1.2756 1.8119 51 1 5.5842 -0.0698 2.8982 52 1 3.7815 -1.3835 0.0956 53 1 3.9099 -1.4300 1.8710 54 1 1.7324 -0.2707 2.0661 55 1 1.5634 -1.7715 1.1244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369369952.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:21 Heat of formation + Delta-G solvation = -59.085686 kcal Electronic energy + Delta-G solvation = -29027.962217 eV Core-core repulsion = 25097.875135 eV Total energy + Delta-G solvation = -3930.087082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37725 -40.53060 -38.94183 -37.00343 -35.73423 -35.17537 -33.84140 -32.77288 -31.99613 -30.51455 -29.50246 -28.20158 -26.70687 -24.98748 -24.17191 -23.70591 -22.29563 -22.15209 -21.92717 -21.46527 -20.64047 -19.32758 -18.52074 -17.63278 -17.36123 -16.80128 -16.55377 -16.38188 -16.11189 -16.00863 -15.57002 -15.51803 -15.37563 -15.21392 -14.93692 -14.41810 -14.26521 -14.11336 -13.74666 -13.62341 -13.51274 -13.41632 -13.25708 -13.15121 -12.80039 -12.69503 -12.54997 -12.53228 -12.36514 -12.31670 -12.07675 -12.02588 -11.86064 -11.65851 -11.62317 -11.44151 -11.27857 -11.19672 -11.11056 -10.54898 -10.36269 -9.76957 -9.41978 -9.29109 -8.18344 -6.29739 1.42731 1.42744 1.55995 1.70368 2.14964 2.43000 2.86238 3.01042 3.15646 3.32610 3.50837 3.64458 3.87070 3.93385 4.08933 4.17819 4.19222 4.22086 4.25227 4.27790 4.34968 4.38324 4.45737 4.58078 4.59333 4.59812 4.63698 4.70858 4.71614 4.80427 4.87179 4.89395 4.96132 4.97702 5.00017 5.03040 5.04755 5.08966 5.13944 5.18767 5.24370 5.39186 5.48529 5.55793 5.58886 5.72788 5.83522 5.85811 6.02184 6.09480 6.12829 6.13084 6.24183 6.87817 7.13234 7.39965 7.60064 8.94019 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031573 B = 0.001430 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.618325 B =19581.445508 C =20087.048261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.058 3.942 4 C -0.105 4.105 5 C 0.078 3.922 6 N -0.511 5.511 7 C 0.043 3.957 8 C -0.133 4.133 9 C 0.153 3.847 10 H 0.073 0.927 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.730 5.730 15 C 0.150 3.850 16 C -0.100 4.100 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.040 3.960 27 C -0.103 4.103 28 C 0.057 3.943 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.413 0.587 42 H 0.412 0.588 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.068 0.932 47 H -0.008 1.008 48 H -0.008 1.008 49 H 0.263 0.737 50 H 0.097 0.903 51 H 0.060 0.940 52 H 0.072 0.928 53 H 0.071 0.929 54 H 0.030 0.970 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.867 4.654 -11.067 38.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.031 4.031 6 N -0.236 5.236 7 C -0.084 4.084 8 C -0.172 4.172 9 C 0.047 3.953 10 H 0.091 0.909 11 N -0.378 5.378 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.386 5.386 15 C 0.026 3.974 16 C -0.138 4.138 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.182 1.182 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.088 4.088 27 C -0.141 4.141 28 C -0.071 4.071 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.248 0.752 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.072 0.928 50 H 0.115 0.885 51 H 0.078 0.922 52 H 0.090 0.910 53 H 0.090 0.910 54 H 0.048 0.952 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -36.325 5.062 -11.257 38.365 hybrid contribution 0.533 -0.084 1.317 1.424 sum -35.793 4.978 -9.939 37.479 Atomic orbital electron populations 1.22385 0.86358 1.02631 1.00966 1.61962 1.08496 1.14050 1.43662 1.22091 0.95152 0.89060 1.00750 1.21596 0.93957 1.00041 0.98666 1.21896 0.86995 0.96900 0.97307 1.64874 1.04007 1.16330 1.38344 1.23179 0.92644 0.90428 1.02192 1.22897 0.97074 0.98549 0.98688 1.21629 0.85700 0.88795 0.99174 0.90857 1.45017 1.11016 1.27509 1.54224 1.16175 0.81204 0.82730 0.80072 1.90885 1.82563 1.32201 1.46568 1.45031 1.12598 1.25906 1.55042 1.21056 0.81606 0.98561 0.96209 1.21588 0.94640 0.96641 1.00963 1.18955 0.92150 0.95743 0.94666 1.21716 0.98157 1.07629 1.30287 0.91500 1.26010 1.00184 0.98946 0.94893 1.70117 1.18475 1.34219 1.34758 0.85370 0.78380 0.78983 0.78125 1.18162 1.20615 1.20615 1.23054 0.92482 1.00369 0.92929 1.21563 0.93839 0.95787 1.02929 1.22094 0.95216 0.98672 0.91109 0.90749 0.90804 0.95626 0.95111 0.89791 0.90782 0.90990 0.94523 0.93136 0.88737 0.91715 0.90604 0.75015 0.75164 0.93644 0.93583 0.91324 0.91364 0.98949 0.98926 0.92845 0.88469 0.92186 0.90967 0.91001 0.95151 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.59 127.69 1.22 1.43 16 2 N -0.56 -6.33 4.91 -922.58 -4.53 -10.87 16 3 C 0.06 0.59 5.46 86.33 0.47 1.06 16 4 C -0.10 -1.13 5.11 30.65 0.16 -0.98 16 5 C 0.08 0.91 1.72 45.00 0.08 0.99 16 6 N -0.51 -6.79 5.11 -857.38 -4.38 -11.17 16 7 C 0.04 0.59 5.32 86.65 0.46 1.05 16 8 C -0.13 -2.39 6.78 31.80 0.22 -2.18 16 9 C 0.15 2.91 3.34 45.87 0.15 3.06 16 10 H 0.07 1.75 7.56 -2.38 -0.02 1.73 16 11 N -0.72 -14.65 5.06 -453.61 -2.30 -16.94 16 12 C 0.70 20.91 8.57 179.05 1.53 22.45 16 13 O -0.64 -25.49 15.99 -3.98 -0.06 -25.56 16 14 N -0.73 -20.50 5.56 -478.53 -2.66 -23.16 16 15 C 0.15 5.44 5.67 86.38 0.49 5.93 16 16 C -0.10 -3.89 5.27 30.59 0.16 -3.72 16 17 C 0.02 1.18 4.97 29.85 0.15 1.33 16 18 C -0.54 -30.22 9.11 25.60 0.23 -29.98 16 19 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 21 N -0.94 -57.36 13.29 21.44 0.28 -57.08 16 22 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.04 0.54 5.38 86.45 0.47 1.01 16 27 C -0.10 -1.14 5.32 30.64 0.16 -0.98 16 28 C 0.06 0.60 5.46 86.32 0.47 1.07 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 31 H 0.03 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.08 0.74 8.12 -2.38 -0.02 0.72 16 34 H 0.07 0.71 7.03 -2.39 -0.02 0.69 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.04 0.47 7.95 -2.39 -0.02 0.45 16 37 H 0.05 0.65 8.02 -2.39 -0.02 0.63 16 38 H 0.09 1.14 7.71 -2.39 -0.02 1.12 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 41 H 0.41 5.83 8.37 -92.71 -0.78 5.05 16 42 H 0.41 8.59 8.49 -92.71 -0.79 7.81 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 50 H 0.10 1.14 7.65 -2.39 -0.02 1.13 16 51 H 0.06 0.78 7.65 -2.38 -0.02 0.76 16 52 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 53 H 0.07 0.72 7.45 -2.39 -0.02 0.70 16 54 H 0.03 0.32 8.14 -2.38 -0.02 0.30 16 55 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 Total: -1.00 -72.02 425.45 -5.44 -77.46 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.71 Total: 19.56 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.89 Total: 1.84 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -13.58 Total: -119.22 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.02 -5.44 -77.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369369952.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.372 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds