Wall clock time and date at job start Tue Mar 31 2020 22:49:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86803 * 119.99854 * 2 1
4 4 H 1.48503 * 109.46885 * 270.00558 * 3 2 1
5 5 H 1.48499 * 109.47136 * 30.00180 * 3 2 1
6 6 H 1.48497 * 109.46976 * 150.00169 * 3 2 1
7 7 C 1.37877 * 120.00372 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99786 * 359.97438 * 7 2 1
9 9 C 1.50696 * 120.00385 * 179.97438 * 7 2 1
10 10 C 1.52996 * 109.47541 * 179.97438 * 9 7 2
11 11 N 1.46496 * 109.47448 * 179.97438 * 10 9 7
12 12 C 1.34774 * 120.00024 * 179.97438 * 11 10 9
13 13 O 1.21283 * 120.00324 * 0.02562 * 12 11 10
14 14 C 1.50706 * 119.99768 * 180.02562 * 12 11 10
15 15 H 1.09007 * 110.66305 * 301.78005 * 14 12 11
16 16 C 1.54699 * 110.75071 * 64.99737 * 14 12 11
17 17 C 1.51646 * 101.92234 * 93.01730 * 16 14 12
18 18 C 1.37749 * 132.16603 * 195.78183 * 17 16 14
19 19 C 1.38427 * 119.97225 * 179.44946 * 18 17 16
20 20 Br 1.89100 * 120.12457 * 179.90826 * 19 18 17
21 21 C 1.38365 * 119.74350 * 0.18179 * 19 18 17
22 22 C 1.37924 * 120.34180 * 359.61618 * 21 19 18
23 23 C 1.38877 * 107.04225 * 15.47059 * 17 16 14
24 24 O 1.36153 * 111.23254 * 0.94612 * 23 17 16
25 25 H 0.96993 * 119.99881 * 359.97438 * 1 2 3
26 26 H 1.09005 * 109.47148 * 59.99567 * 9 7 2
27 27 H 1.09002 * 109.47384 * 300.00143 * 9 7 2
28 28 H 1.09000 * 109.46807 * 59.99748 * 10 9 7
29 29 H 1.09002 * 109.46921 * 300.00454 * 10 9 7
30 30 H 0.97004 * 120.00109 * 0.02562 * 11 10 9
31 31 H 1.08992 * 110.94298 * 334.85887 * 16 14 12
32 32 H 1.09003 * 110.94124 * 211.16577 * 16 14 12
33 33 H 1.07994 * 120.00884 * 359.46880 * 18 17 16
34 34 H 1.07997 * 119.82384 * 179.89858 * 21 19 18
35 35 H 1.07999 * 119.87266 * 180.32437 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0047 -1.1940 -0.0005
8 1 1.4647 -2.1294 -0.0005
9 6 3.5116 -1.1940 -0.0011
10 6 4.0217 -2.6364 -0.0010
11 7 5.4867 -2.6364 -0.0022
12 6 6.1605 -3.8036 -0.0018
13 8 5.5542 -4.8540 -0.0009
14 6 7.6676 -3.8035 -0.0024
15 1 8.0519 -3.2668 -0.8699
16 6 8.2162 -3.1912 1.3081
17 6 8.4007 -4.4214 2.1754
18 6 8.5848 -4.5775 3.5316
19 6 8.7175 -5.8459 4.0700
20 35 8.9729 -6.0650 5.9308
21 6 8.6681 -6.9523 3.2406
22 6 8.4797 -6.7976 1.8831
23 6 8.3499 -5.5245 1.3332
24 8 8.1770 -5.1473 0.0365
25 1 -0.4849 0.8400 0.0004
26 1 3.8753 -0.6803 0.8888
27 1 3.8747 -0.6800 -0.8911
28 1 3.6580 -3.1505 -0.8907
29 1 3.6587 -3.1501 0.8892
30 1 5.9717 -1.7963 -0.0025
31 1 7.4927 -2.5071 1.7512
32 1 9.1688 -2.6903 1.1352
33 1 8.6253 -3.7107 4.1745
34 1 8.7731 -7.9423 3.6591
35 1 8.4371 -7.6668 1.2435
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000373403048.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:20
Heat of formation + Delta-G solvation = -64.961486 kcal
Electronic energy + Delta-G solvation = -20454.432202 eV
Core-core repulsion = 17077.028014 eV
Total energy + Delta-G solvation = -3377.404188 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 339.026 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.65061 -40.34724 -38.53871 -36.68405 -34.91163 -33.95843 -32.88504 -32.22512
-30.57580 -29.82301 -27.12374 -25.25808 -23.47755 -22.81292 -22.59290 -21.71864
-19.15422 -18.95726 -18.20368 -17.97329 -16.94910 -16.62525 -16.30544 -16.22118
-15.96185 -15.23845 -15.05344 -14.79762 -14.60184 -14.48437 -14.21198 -13.79147
-13.36294 -13.28493 -13.09254 -12.95209 -12.73770 -12.24214 -12.16808 -12.08972
-11.75136 -11.62512 -11.50025 -11.29617 -10.82422 -10.78683 -10.16426 -10.05072
-9.20082 -8.29798 -6.37899 -0.04478 0.13884 0.57752 1.40411 1.41573
1.43675 1.54644 1.79958 2.26875 2.37786 2.48545 3.05569 3.23697
3.35382 3.60008 3.72257 4.02087 4.08754 4.14702 4.32312 4.38986
4.43480 4.62011 4.67700 4.72849 4.75913 4.91194 5.06853 5.08721
5.17495 5.31026 5.38092 5.40027 5.62163 5.90310 6.21321 6.49377
6.70473 7.15279 7.26936 8.87220
Molecular weight = 339.03amu
Principal moments of inertia in cm(-1)
A = 0.015897 B = 0.002593 C = 0.002383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1760.874116 B =10794.680346 C =11748.824211
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C 0.002 3.998
3 Si 0.961 3.039
4 H -0.264 1.264
5 H -0.289 1.289
6 H -0.231 1.231
7 C -0.542 4.542
8 H 0.025 0.975
9 C -0.011 4.011
10 C 0.145 3.855
11 N -0.704 5.704
12 C 0.486 3.514
13 O -0.581 6.581
14 C 0.067 3.933
15 H 0.189 0.811
16 C -0.090 4.090
17 C -0.178 4.178
18 C -0.045 4.045
19 C -0.130 4.130
20 Br -0.040 7.040
21 C -0.056 4.056
22 C -0.141 4.141
23 C 0.100 3.900
24 O -0.289 6.289
25 H 0.268 0.732
26 H 0.041 0.959
27 H 0.040 0.960
28 H 0.043 0.957
29 H 0.040 0.960
30 H 0.419 0.581
31 H 0.111 0.889
32 H 0.147 0.853
33 H 0.153 0.847
34 H 0.161 0.839
35 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.239 -7.427 9.082 30.579
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.593 5.593
2 C -0.195 4.195
3 Si 0.783 3.217
4 H -0.189 1.189
5 H -0.215 1.215
6 H -0.153 1.153
7 C -0.580 4.580
8 H 0.043 0.957
9 C -0.049 4.049
10 C 0.021 3.979
11 N -0.357 5.357
12 C 0.272 3.728
13 O -0.460 6.460
14 C 0.008 3.992
15 H 0.206 0.794
16 C -0.127 4.127
17 C -0.180 4.180
18 C -0.065 4.065
19 C -0.210 4.210
20 Br 0.046 6.954
21 C -0.076 4.076
22 C -0.161 4.161
23 C 0.055 3.945
24 O -0.201 6.201
25 H 0.077 0.923
26 H 0.059 0.941
27 H 0.058 0.942
28 H 0.061 0.939
29 H 0.059 0.941
30 H 0.257 0.743
31 H 0.129 0.871
32 H 0.165 0.835
33 H 0.171 0.829
34 H 0.178 0.822
35 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 27.793 -8.281 9.571 30.539
hybrid contribution -0.744 0.732 -0.517 1.165
sum 27.049 -7.549 9.054 29.506
Atomic orbital electron populations
1.70087 1.08761 1.28487 1.51948 1.26139 0.95697 1.04077 0.93584
0.85510 0.79815 0.76974 0.79391 1.18932 1.21528 1.15345 1.21271
0.91801 0.93254 1.51708 0.95682 1.19647 0.94211 0.92597 0.98431
1.21042 0.78343 0.98697 0.99833 1.45934 1.07348 1.08820 1.73627
1.21641 0.91444 0.83790 0.75938 1.90725 1.71192 1.33212 1.50891
1.23679 0.88738 0.82198 1.04581 0.79380 1.21951 1.05516 0.95349
0.89890 1.20998 1.06831 0.95641 0.94497 1.20415 0.96096 0.96811
0.93172 1.21726 1.11651 0.96093 0.91525 1.96712 1.96040 1.97952
1.04741 1.21063 0.95912 0.99202 0.91400 1.20526 1.05438 0.94915
0.95173 1.20029 0.95189 0.95351 0.83964 1.86927 1.78147 1.32146
1.22910 0.92342 0.94074 0.94168 0.93889 0.94125 0.74312 0.87060
0.83520 0.82917 0.82160 0.83602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16
2 C 0.00 0.11 5.47 84.65 0.46 0.57 16
3 Si 0.96 40.82 27.47 68.60 1.88 42.71 16
4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16
5 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16
6 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16
7 C -0.54 -30.38 9.66 25.60 0.25 -30.13 16
8 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16
9 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16
10 C 0.14 5.66 5.61 86.38 0.48 6.14 16
11 N -0.70 -19.68 5.39 -463.07 -2.50 -22.17 16
12 C 0.49 14.46 7.07 87.66 0.62 15.08 16
13 O -0.58 -24.07 16.53 15.19 0.25 -23.82 16
14 C 0.07 1.30 4.11 30.43 0.13 1.43 16
15 H 0.19 1.93 8.14 -2.38 -0.02 1.91 16
16 C -0.09 -1.27 6.64 30.73 0.20 -1.06 16
17 C -0.18 -3.64 6.26 -19.53 -0.12 -3.76 16
18 C -0.05 -0.86 9.78 22.20 0.22 -0.65 16
19 C -0.13 -2.54 6.23 22.35 0.14 -2.40 16
20 Br -0.04 -0.68 33.71 -20.37 -0.69 -1.37 16
21 C -0.06 -1.07 9.76 22.23 0.22 -0.85 16
22 C -0.14 -3.11 10.06 22.45 0.23 -2.88 16
23 C 0.10 2.46 6.91 22.67 0.16 2.62 16
24 O -0.29 -7.39 10.41 -77.06 -0.80 -8.19 16
25 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
26 H 0.04 1.60 7.20 -2.38 -0.02 1.58 16
27 H 0.04 1.54 7.57 -2.39 -0.02 1.53 16
28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16
29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
30 H 0.42 7.99 8.47 -92.71 -0.79 7.20 16
31 H 0.11 1.41 7.78 -2.39 -0.02 1.39 16
32 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16
33 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16
34 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16
35 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16
Total: -1.00 -77.46 324.01 1.83 -75.63
By element:
Atomic # 1 Polarization: 11.85 SS G_CDS: 0.28 Total: 12.14 kcal
Atomic # 6 Polarization: -19.34 SS G_CDS: 3.10 Total: -16.24 kcal
Atomic # 7 Polarization: -78.66 SS G_CDS: -2.20 Total: -80.85 kcal
Atomic # 8 Polarization: -31.46 SS G_CDS: -0.55 Total: -32.01 kcal
Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.71 kcal
Atomic # 35 Polarization: -0.68 SS G_CDS: -0.69 Total: -1.37 kcal
Total: -77.46 1.83 -75.63 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000373403048.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.665 kcal
(2) G-P(sol) polarization free energy of solvation -77.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.961 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds