Wall clock time and date at job start Tue Mar 31 2020 22:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46773 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99765 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00344 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99956 * 179.97438 * 12 11 10 15 15 H 1.08999 * 110.66386 * 55.70003 * 14 12 11 16 16 C 1.54709 * 110.75016 * 292.48936 * 14 12 11 17 17 C 1.51647 * 101.91010 * 267.03759 * 16 14 12 18 18 C 1.37742 * 132.17342 * 164.32733 * 17 16 14 19 19 C 1.38425 * 119.96953 * 180.34876 * 18 17 16 20 20 Br 1.89105 * 120.12725 * 179.97438 * 19 18 17 21 21 C 1.38370 * 119.74716 * 359.97368 * 19 18 17 22 22 C 1.37919 * 120.34059 * 359.82172 * 21 19 18 23 23 C 1.38881 * 107.03197 * 344.31826 * 17 16 14 24 24 O 1.36600 * 111.30755 * 359.33640 * 23 17 16 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 30 30 H 0.96999 * 120.00184 * 359.97438 * 11 10 9 31 31 H 1.09003 * 110.94043 * 25.18148 * 16 14 12 32 32 H 1.08996 * 110.94743 * 148.88117 * 16 14 12 33 33 H 1.07994 * 120.01195 * 0.28151 * 18 17 16 34 34 H 1.08008 * 119.82591 * 179.85273 * 21 19 18 35 35 H 1.08000 * 119.87682 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1867 -6.0980 0.0003 13 8 3.3995 -6.0980 0.0017 14 6 1.4332 -7.4031 0.0003 15 1 0.7435 -7.4490 -0.8425 16 6 0.6794 -7.6009 1.3368 17 6 1.6856 -8.3927 2.1493 18 6 1.7801 -8.6606 3.4972 19 6 2.8306 -9.4226 3.9788 20 35 2.9651 -9.7925 5.8284 21 6 3.7820 -9.9126 3.1016 22 6 3.6863 -9.6486 1.7513 23 6 2.6307 -8.8848 1.2587 24 8 2.3426 -8.5162 -0.0247 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 0.5428 -4.9308 0.0000 31 1 0.4656 -6.6421 1.8090 32 1 -0.2364 -8.1726 1.1867 33 1 1.0355 -8.2754 4.1779 34 1 4.6035 -10.5053 3.4763 35 1 4.4328 -10.0351 1.0733 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373403049.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:23 Heat of formation + Delta-G solvation = -47.780288 kcal Electronic energy + Delta-G solvation = -20385.040807 eV Core-core repulsion = 17008.381651 eV Total energy + Delta-G solvation = -3376.659156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67302 -39.06346 -37.57473 -34.98526 -33.30907 -32.74543 -32.05639 -30.46993 -29.23121 -28.88825 -25.42396 -24.04292 -22.58739 -21.89676 -21.12606 -20.43417 -17.97756 -17.27800 -17.04610 -16.40315 -15.95203 -15.32201 -15.00114 -14.75038 -14.48905 -14.28552 -13.79980 -13.53853 -13.45446 -13.26540 -12.82307 -12.34223 -12.29108 -12.15509 -11.89955 -11.29315 -11.27693 -11.06347 -10.73034 -10.69811 -10.52086 -10.40721 -9.88654 -9.55593 -9.31123 -9.23905 -8.67076 -8.44150 -8.31181 -6.14450 -4.17609 0.81750 0.96399 1.38436 2.62155 2.85237 3.28295 3.32192 3.32507 3.34829 3.47097 4.03985 4.20934 4.37279 4.50575 4.73505 4.83959 4.84837 4.93477 5.22598 5.22791 5.30417 5.39691 5.57455 5.70315 5.87841 6.02547 6.12018 6.22448 6.24909 6.63119 6.73392 6.78049 7.43160 7.53410 7.79561 7.83736 8.20269 8.43088 8.87839 9.47609 10.97030 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.002452 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.585191 B =11417.557455 C =12444.013445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.122 3.878 11 N -0.715 5.715 12 C 0.488 3.512 13 O -0.528 6.528 14 C 0.061 3.939 15 H 0.144 0.856 16 C -0.098 4.098 17 C -0.168 4.168 18 C -0.038 4.038 19 C -0.122 4.122 20 Br -0.050 7.050 21 C -0.055 4.055 22 C -0.128 4.128 23 C 0.133 3.867 24 O -0.271 6.271 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.399 0.601 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -23.729 8.501 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.000 4.000 11 N -0.367 5.367 12 C 0.272 3.728 13 O -0.405 6.405 14 C 0.001 3.999 15 H 0.162 0.838 16 C -0.136 4.136 17 C -0.170 4.170 18 C -0.058 4.058 19 C -0.202 4.202 20 Br 0.035 6.965 21 C -0.075 4.075 22 C -0.147 4.147 23 C 0.087 3.913 24 O -0.183 6.183 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.233 0.767 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.341 -23.815 8.970 25.483 hybrid contribution -0.190 1.213 -0.411 1.295 sum 1.151 -22.602 8.559 24.195 Atomic orbital electron populations 1.69937 1.06090 1.27073 1.50166 1.24989 0.94903 0.99423 0.94871 0.86565 0.79535 0.82580 0.78836 1.20084 1.21196 1.20060 1.21002 0.93232 0.90355 1.51689 0.92288 1.19317 0.94139 0.91012 0.97896 1.21792 0.96133 0.81098 1.01001 1.46279 1.10590 1.06297 1.73496 1.20684 0.88695 0.85560 0.77899 1.90728 1.13529 1.87292 1.48937 1.23429 0.89970 0.85379 1.01098 0.83832 1.21812 0.97674 1.01873 0.92218 1.20657 0.97964 1.04282 0.94091 1.20160 0.96625 0.95404 0.93567 1.21492 1.00832 1.06953 0.90911 1.96700 1.98402 1.94525 1.06833 1.20810 0.97486 0.97682 0.91477 1.20245 0.97027 1.02506 0.94971 1.19768 0.93329 0.94332 0.83885 1.87064 1.63190 1.45075 1.22936 0.92729 0.95869 0.95870 0.92345 0.92412 0.76744 0.87795 0.87489 0.84590 0.84125 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 11 N -0.71 -11.54 5.48 -60.29 -0.33 -11.87 16 12 C 0.49 7.96 7.05 -10.99 -0.08 7.88 16 13 O -0.53 -11.04 16.50 -13.51 -0.22 -11.27 16 14 C 0.06 0.73 4.10 -26.98 -0.11 0.61 16 15 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -0.95 6.64 -26.52 -0.18 -1.13 16 17 C -0.17 -1.98 6.26 -104.10 -0.65 -2.63 16 18 C -0.04 -0.41 9.78 -39.69 -0.39 -0.80 16 19 C -0.12 -1.31 6.23 -39.46 -0.25 -1.56 16 20 Br -0.05 -0.47 33.71 -68.01 -2.29 -2.77 16 21 C -0.05 -0.56 9.76 -39.65 -0.39 -0.95 16 22 C -0.13 -1.47 10.06 -39.31 -0.40 -1.87 16 23 C 0.13 1.75 6.88 -38.95 -0.27 1.48 16 24 O -0.27 -3.78 10.45 -40.75 -0.43 -4.20 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.40 5.23 8.47 -40.82 -0.35 4.88 16 31 H 0.10 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -32.60 327.72 -9.99 -42.60 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.10 Total: 0.66 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.28 Total: -9.32 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.41 Total: -36.73 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.65 Total: -15.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.60 -9.99 -42.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373403049.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.181 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds