Wall clock time and date at job start Tue Mar 31 2020 22:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46773 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99765 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00344 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99956 * 179.97438 * 12 11 10 15 15 H 1.08999 * 110.66386 * 55.70003 * 14 12 11 16 16 C 1.54709 * 110.75016 * 292.48936 * 14 12 11 17 17 C 1.51647 * 101.91010 * 267.03759 * 16 14 12 18 18 C 1.37742 * 132.17342 * 164.32733 * 17 16 14 19 19 C 1.38425 * 119.96953 * 180.34876 * 18 17 16 20 20 Br 1.89105 * 120.12725 * 179.97438 * 19 18 17 21 21 C 1.38370 * 119.74716 * 359.97368 * 19 18 17 22 22 C 1.37919 * 120.34059 * 359.82172 * 21 19 18 23 23 C 1.38881 * 107.03197 * 344.31826 * 17 16 14 24 24 O 1.36600 * 111.30755 * 359.33640 * 23 17 16 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 30 30 H 0.96999 * 120.00184 * 359.97438 * 11 10 9 31 31 H 1.09003 * 110.94043 * 25.18148 * 16 14 12 32 32 H 1.08996 * 110.94743 * 148.88117 * 16 14 12 33 33 H 1.07994 * 120.01195 * 0.28151 * 18 17 16 34 34 H 1.08008 * 119.82591 * 179.85273 * 21 19 18 35 35 H 1.08000 * 119.87682 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1867 -6.0980 0.0003 13 8 3.3995 -6.0980 0.0017 14 6 1.4332 -7.4031 0.0003 15 1 0.7435 -7.4490 -0.8425 16 6 0.6794 -7.6009 1.3368 17 6 1.6856 -8.3927 2.1493 18 6 1.7801 -8.6606 3.4972 19 6 2.8306 -9.4226 3.9788 20 35 2.9651 -9.7925 5.8284 21 6 3.7820 -9.9126 3.1016 22 6 3.6863 -9.6486 1.7513 23 6 2.6307 -8.8848 1.2587 24 8 2.3426 -8.5162 -0.0247 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 0.5428 -4.9308 0.0000 31 1 0.4656 -6.6421 1.8090 32 1 -0.2364 -8.1726 1.1867 33 1 1.0355 -8.2754 4.1779 34 1 4.6035 -10.5053 3.4763 35 1 4.4328 -10.0351 1.0733 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373403049.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:22 Heat of formation + Delta-G solvation = -67.632093 kcal Electronic energy + Delta-G solvation = -20385.901646 eV Core-core repulsion = 17008.381651 eV Total energy + Delta-G solvation = -3377.519995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61539 -40.32282 -38.52193 -36.63176 -34.93917 -33.93063 -32.88336 -31.91027 -30.43019 -29.81112 -27.02277 -25.33797 -23.50166 -22.95376 -22.65930 -21.70714 -19.14988 -18.52440 -18.19310 -17.92467 -16.91686 -16.58961 -16.52688 -16.25770 -15.89297 -15.22560 -14.97305 -14.72879 -14.51467 -14.30276 -14.19796 -13.78202 -13.29312 -13.24141 -12.99810 -12.94031 -12.75099 -12.56218 -12.24600 -12.09901 -11.74092 -11.59807 -11.44334 -11.29531 -10.80184 -10.60682 -10.12992 -10.04853 -9.20685 -8.24877 -6.34915 -0.04483 0.13814 0.57434 1.41330 1.41787 1.43285 1.51227 1.81767 2.27086 2.42884 2.48877 3.10150 3.22958 3.35364 3.60636 3.71818 4.01713 4.08261 4.14144 4.41171 4.45242 4.46459 4.61138 4.67169 4.75833 4.82885 4.90400 5.06677 5.17801 5.21175 5.30593 5.45878 5.57816 5.77274 5.88910 6.15331 6.50511 6.77694 7.14260 7.34329 8.86435 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.002452 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.585191 B =11417.557455 C =12444.013445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.141 3.859 11 N -0.705 5.705 12 C 0.487 3.513 13 O -0.580 6.580 14 C 0.066 3.934 15 H 0.186 0.814 16 C -0.090 4.090 17 C -0.177 4.177 18 C -0.046 4.046 19 C -0.129 4.129 20 Br -0.039 7.039 21 C -0.056 4.056 22 C -0.139 4.139 23 C 0.100 3.900 24 O -0.289 6.289 25 H 0.266 0.734 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.416 0.584 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -24.266 8.992 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.074 0.926 9 C -0.013 4.013 10 C 0.017 3.983 11 N -0.358 5.358 12 C 0.273 3.727 13 O -0.460 6.460 14 C 0.007 3.993 15 H 0.202 0.798 16 C -0.127 4.127 17 C -0.179 4.179 18 C -0.066 4.066 19 C -0.209 4.209 20 Br 0.046 6.954 21 C -0.075 4.075 22 C -0.158 4.158 23 C 0.055 3.945 24 O -0.201 6.201 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.253 0.747 31 H 0.125 0.875 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.180 0.820 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.705 -24.374 9.467 26.158 hybrid contribution 0.022 1.326 -0.511 1.421 sum 0.727 -23.048 8.956 24.738 Atomic orbital electron populations 1.70029 1.07384 1.28080 1.50815 1.25809 0.95781 1.02877 0.94396 0.85560 0.78391 0.78431 0.79059 1.19481 1.20496 1.19464 1.21440 0.93520 0.92104 1.51797 0.92585 1.19117 0.94120 0.91337 0.96696 1.21245 0.95155 0.82172 0.99712 1.46019 1.11330 1.05076 1.73350 1.21587 0.88313 0.86831 0.76003 1.90702 1.16028 1.88123 1.51104 1.23628 0.89447 0.82121 1.04092 0.79751 1.21925 0.98197 1.02332 0.90282 1.20956 0.98264 1.04291 0.94366 1.20403 0.97104 0.95432 0.93627 1.21721 1.00854 1.06679 0.91641 1.96709 1.98380 1.94439 1.05833 1.21076 0.97947 0.97511 0.90969 1.20531 0.97075 1.02437 0.95779 1.20124 0.94601 0.95779 0.84034 1.87042 1.63992 1.45389 1.23673 0.92482 0.96890 0.96917 0.93627 0.93823 0.74714 0.87452 0.83678 0.83052 0.81987 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.14 5.84 5.61 86.38 0.48 6.33 16 11 N -0.71 -22.28 5.48 -463.04 -2.54 -24.82 16 12 C 0.49 15.56 7.05 87.66 0.62 16.18 16 13 O -0.58 -24.59 16.50 15.19 0.25 -24.34 16 14 C 0.07 1.44 4.10 30.43 0.12 1.57 16 15 H 0.19 2.42 8.14 -2.39 -0.02 2.41 16 16 C -0.09 -1.51 6.64 30.73 0.20 -1.31 16 17 C -0.18 -3.91 6.26 -19.53 -0.12 -4.03 16 18 C -0.05 -0.94 9.78 22.20 0.22 -0.72 16 19 C -0.13 -2.61 6.23 22.35 0.14 -2.47 16 20 Br -0.04 -0.68 33.71 -20.37 -0.69 -1.37 16 21 C -0.06 -1.08 9.76 22.23 0.22 -0.86 16 22 C -0.14 -3.13 10.06 22.45 0.23 -2.90 16 23 C 0.10 2.57 6.88 22.68 0.16 2.72 16 24 O -0.29 -7.79 10.45 -82.27 -0.86 -8.65 16 25 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.42 10.28 8.47 -92.71 -0.79 9.49 16 31 H 0.11 1.75 7.85 -2.39 -0.02 1.73 16 32 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -70.93 327.72 1.92 -69.00 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.34 Total: 10.77 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 3.11 Total: -13.05 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.25 Total: -77.40 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.61 Total: -32.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -0.69 Total: -1.37 kcal Total: -70.93 1.92 -69.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373403049.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.373 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds