Wall clock time and date at job start Tue Mar 31 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 N 1.46900 * 109.47158 * 120.00411 * 2 1 3 5 5 C 1.46959 * 110.99825 * 175.00082 * 4 2 1 6 6 C 1.53049 * 109.36225 * 176.81140 * 5 4 2 7 7 N 1.46951 * 109.36763 * 58.39833 * 6 5 4 8 8 C 1.46900 * 111.00294 * 176.81089 * 7 6 5 9 9 C 1.53037 * 109.46266 * 295.03212 * 8 7 6 10 10 C 1.53191 * 109.31516 * 178.59889 * 9 8 7 11 11 N 1.46933 * 108.76330 * 54.65199 * 10 9 8 12 12 C 1.34780 * 120.62690 * 126.36087 * 11 10 9 13 13 O 1.21585 * 119.99494 * 174.98228 * 12 11 10 14 14 N 1.34776 * 120.00156 * 354.98807 * 12 11 10 15 15 C 1.46499 * 119.99966 * 185.06698 * 14 12 11 16 16 C 1.50704 * 109.47056 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99627 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00254 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99591 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47256 * 60.00452 * 20 18 16 22 22 H 1.48504 * 109.46903 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47242 * 299.99721 * 20 18 16 24 24 C 1.46917 * 118.73896 * 306.38329 * 11 10 9 25 25 C 1.53045 * 109.46362 * 174.97072 * 8 7 6 26 26 C 1.46959 * 110.88227 * 300.67990 * 7 6 5 27 27 C 1.46960 * 111.00159 * 51.19806 * 4 2 1 28 28 H 1.08995 * 109.46973 * 60.00322 * 1 2 3 29 29 H 1.09002 * 109.46623 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46802 * 299.99910 * 1 2 3 31 31 H 1.09001 * 109.47064 * 240.00023 * 2 1 3 32 32 H 1.08999 * 109.46715 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46959 * 300.00253 * 3 2 1 34 34 H 1.08997 * 109.46635 * 59.99848 * 3 2 1 35 35 H 1.08999 * 109.49266 * 56.84160 * 5 4 2 36 36 H 1.09001 * 109.48783 * 296.77608 * 5 4 2 37 37 H 1.09002 * 109.48947 * 178.37040 * 6 5 4 38 38 H 1.08997 * 109.48698 * 298.43194 * 6 5 4 39 39 H 1.09005 * 109.45812 * 55.00177 * 8 7 6 40 40 H 1.09000 * 109.49351 * 298.56499 * 9 8 7 41 41 H 1.08993 * 109.49947 * 58.65744 * 9 8 7 42 42 H 1.09003 * 109.59670 * 294.86533 * 10 9 8 43 43 H 1.09000 * 109.58422 * 174.43215 * 10 9 8 44 44 H 0.97000 * 120.00249 * 5.07560 * 14 12 11 45 45 H 1.08996 * 109.47538 * 300.00795 * 15 14 12 46 46 H 1.09005 * 109.46746 * 60.00635 * 15 14 12 47 47 H 0.96997 * 120.00067 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.58831 * 293.82234 * 24 11 10 49 49 H 1.09006 * 109.58557 * 173.39807 * 24 11 10 50 50 H 1.08996 * 109.49917 * 301.34202 * 25 8 7 51 51 H 1.09004 * 109.48881 * 61.43552 * 25 8 7 52 52 H 1.09001 * 109.48783 * 299.35224 * 26 7 6 53 53 H 1.08999 * 109.49266 * 179.28671 * 26 7 6 54 54 H 1.08997 * 109.48744 * 303.15813 * 27 4 2 55 55 H 1.08997 * 109.48831 * 63.22354 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4838 -0.8166 1.1750 6 6 3.9594 -1.4703 2.4746 7 7 3.3245 -2.7877 2.6181 8 6 3.8142 -3.4803 3.8175 9 6 5.3054 -3.7845 3.6575 10 6 5.8204 -4.4753 4.9242 11 7 4.9887 -5.6571 5.1894 12 6 5.5521 -6.8705 5.3532 13 8 4.8635 -7.8238 5.6622 14 7 6.8788 -7.0272 5.1746 15 6 7.4743 -8.3639 5.2431 16 6 8.9599 -8.2645 5.0102 17 1 9.4150 -7.3019 4.8296 18 6 9.7380 -9.4026 5.0276 19 7 9.1838 -10.5749 5.2470 20 14 11.5796 -9.2793 4.7396 21 1 12.1868 -8.4136 5.7821 22 1 12.1830 -10.6345 4.8078 23 1 11.8328 -8.6922 3.3993 24 6 3.5313 -5.4912 5.2722 25 6 3.0420 -4.7888 4.0018 26 6 1.8604 -2.6638 2.6425 27 6 1.3847 -2.0101 1.3429 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.9311 0.1729 1.0808 36 1 3.7825 -1.4332 0.3273 37 1 5.0425 -1.5897 2.4464 38 1 3.6846 -0.8401 3.3204 39 1 3.6649 -2.8446 4.6903 40 1 5.4529 -4.4405 2.7996 41 1 5.8520 -2.8543 3.5029 42 1 5.7571 -3.7872 5.7673 43 1 6.8559 -4.7826 4.7775 44 1 7.4393 -6.2549 5.0007 45 1 7.2883 -8.7946 6.2270 46 1 7.0287 -8.9998 4.4781 47 1 9.7312 -11.3756 5.2589 48 1 3.2813 -4.8860 6.1436 49 1 3.0563 -6.4688 5.3552 50 1 1.9774 -4.5733 4.0922 51 1 3.2110 -5.4352 3.1405 52 1 1.5617 -2.0471 3.4902 53 1 1.4131 -3.6533 2.7367 54 1 0.3017 -1.8907 1.3711 55 1 1.6595 -2.6403 0.4971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426414305.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:36 Heat of formation + Delta-G solvation = -34.117297 kcal Electronic energy + Delta-G solvation = -30461.721927 eV Core-core repulsion = 26532.717555 eV Total energy + Delta-G solvation = -3929.004372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50131 -40.57081 -38.82479 -36.79104 -36.20478 -34.48931 -33.61865 -32.64217 -31.63535 -31.41782 -29.15425 -28.16871 -27.11850 -25.27839 -24.95646 -24.11874 -23.11146 -21.98438 -21.32833 -20.65952 -20.59869 -19.52037 -18.11720 -17.68000 -17.30620 -16.64022 -16.53038 -16.08643 -15.93574 -15.83101 -15.75365 -15.53496 -15.29642 -15.14452 -14.70315 -14.64594 -14.29753 -14.06181 -13.93619 -13.84529 -13.55382 -13.35639 -13.17150 -13.04089 -12.89041 -12.68782 -12.66436 -12.60113 -12.49635 -12.26953 -12.17230 -12.10409 -11.92552 -11.69639 -11.58880 -11.49456 -11.40248 -11.15761 -11.00687 -10.78548 -10.04904 -9.39310 -9.36290 -9.18053 -8.27327 -6.44185 1.43514 1.48431 1.56242 1.78692 2.21239 2.39411 2.82486 2.91017 3.07221 3.17614 3.67311 3.80932 3.91076 3.95654 4.06312 4.08216 4.17007 4.20640 4.30398 4.40892 4.42961 4.44312 4.47743 4.51771 4.53909 4.59942 4.70909 4.76062 4.80659 4.81568 4.86597 4.89833 4.95112 4.96763 4.98599 5.00581 5.06868 5.11034 5.15324 5.17048 5.27196 5.32134 5.37942 5.41217 5.48214 5.59495 5.74726 5.85500 6.03991 6.04804 6.12568 6.21525 6.24878 6.66806 7.18584 7.25892 7.70227 8.84801 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.002025 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.873314 B =13823.115737 C =14691.665723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.140 4.140 4 N -0.539 5.539 5 C 0.058 3.942 6 C 0.058 3.942 7 N -0.546 5.546 8 C 0.097 3.903 9 C -0.117 4.117 10 C 0.110 3.890 11 N -0.628 5.628 12 C 0.692 3.308 13 O -0.649 6.649 14 N -0.724 5.724 15 C 0.285 3.715 16 C -0.555 4.555 17 H 0.083 0.917 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.285 1.285 23 H -0.262 1.262 24 C 0.130 3.870 25 C -0.119 4.119 26 C 0.055 3.945 27 C 0.056 3.944 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.402 0.598 45 H -0.015 1.015 46 H -0.017 1.017 47 H 0.269 0.731 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.053 0.947 52 H 0.042 0.958 53 H 0.086 0.914 54 H 0.094 0.906 55 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.071 28.578 -9.447 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.197 4.197 4 N -0.265 5.265 5 C -0.070 4.070 6 C -0.070 4.070 7 N -0.271 5.271 8 C -0.011 4.011 9 C -0.156 4.156 10 C -0.013 4.013 11 N -0.366 5.366 12 C 0.394 3.606 13 O -0.532 6.532 14 N -0.380 5.380 15 C 0.162 3.838 16 C -0.593 4.593 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.810 3.190 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.186 1.186 24 C 0.007 3.993 25 C -0.158 4.158 26 C -0.073 4.073 27 C -0.072 4.072 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.240 0.760 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.114 0.886 51 H 0.072 0.928 52 H 0.060 0.940 53 H 0.104 0.896 54 H 0.112 0.888 55 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.522 27.710 -9.236 33.076 hybrid contribution 0.978 -0.552 -0.172 1.136 sum -14.544 27.157 -9.408 32.211 Atomic orbital electron populations 1.21916 0.93575 1.02151 1.02664 1.21684 0.96257 0.95479 0.90169 1.21817 1.01002 0.94479 1.02413 1.62301 1.05784 1.19304 1.39149 1.22183 0.87917 1.00348 0.96576 1.22196 0.99554 0.88251 0.96957 1.62156 1.06177 1.19836 1.38935 1.21469 0.94417 0.94088 0.91148 1.21912 0.95422 1.01309 0.96937 1.21846 0.94471 0.86356 0.98629 1.47347 1.07967 1.05703 1.75567 1.16258 0.82636 0.83471 0.78263 1.90812 1.63312 1.41416 1.57689 1.45478 1.05781 1.11380 1.75362 1.18406 0.92643 0.78837 0.93914 1.21542 0.91743 0.95005 1.51011 0.89916 1.26082 1.05101 0.94374 0.94056 1.70141 1.38493 0.99234 1.48981 0.85182 0.76971 0.77439 0.79449 1.18577 1.21076 1.18634 1.21499 0.78250 1.01173 0.98388 1.22007 1.00677 0.96063 0.97016 1.22238 0.87586 1.00431 0.97023 1.22226 0.99795 0.88638 0.96506 0.91210 0.92471 0.91942 0.95060 0.92636 0.91304 0.92136 0.89050 0.95380 0.89329 0.94058 0.92759 0.92541 0.88411 0.89109 0.90114 0.76013 0.99720 0.99878 0.92243 0.89884 0.91431 0.88630 0.92795 0.94018 0.89584 0.88833 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.66 71.98 0.62 -0.83 16 2 C 0.07 0.88 2.68 44.92 0.12 1.00 16 3 C -0.14 -1.38 9.10 71.98 0.65 -0.73 16 4 N -0.54 -7.73 4.58 -870.47 -3.98 -11.71 16 5 C 0.06 0.83 5.40 86.31 0.47 1.29 16 6 C 0.06 0.85 5.40 86.31 0.47 1.31 16 7 N -0.55 -9.31 4.58 -870.33 -3.98 -13.30 16 8 C 0.10 1.70 1.91 44.94 0.09 1.79 16 9 C -0.12 -2.21 5.30 30.67 0.16 -2.05 16 10 C 0.11 2.46 6.43 86.36 0.56 3.01 16 11 N -0.63 -19.78 2.97 -836.91 -2.49 -22.27 16 12 C 0.69 30.72 8.30 179.05 1.49 32.20 16 13 O -0.65 -35.15 15.78 -3.98 -0.06 -35.22 16 14 N -0.72 -32.95 5.46 -482.29 -2.63 -35.59 16 15 C 0.29 16.36 5.43 85.63 0.47 16.83 16 16 C -0.56 -30.88 9.28 25.60 0.24 -30.65 16 17 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 18 C 0.00 0.20 5.46 84.65 0.46 0.66 16 19 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 20 Si 0.99 42.71 29.54 68.60 2.03 44.73 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 24 C 0.13 3.42 6.42 86.36 0.55 3.98 16 25 C -0.12 -2.46 4.88 30.67 0.15 -2.31 16 26 C 0.06 0.84 5.09 86.31 0.44 1.28 16 27 C 0.06 0.83 5.09 86.31 0.44 1.27 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.58 6.25 -2.39 -0.01 0.56 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.03 0.44 8.13 -2.39 -0.02 0.42 16 32 H 0.05 0.55 6.46 -2.39 -0.02 0.53 16 33 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 1.09 6.30 -2.39 -0.02 1.08 16 36 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 1.17 6.27 -2.39 -0.01 1.15 16 38 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.05 0.88 8.13 -2.38 -0.02 0.86 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.39 6.40 -2.39 -0.02 1.37 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.87 5.57 -2.39 -0.01 1.86 16 44 H 0.40 15.28 5.78 -92.71 -0.54 14.74 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.07 2.18 7.03 -2.38 -0.02 2.16 16 50 H 0.10 1.57 6.16 -2.39 -0.01 1.55 16 51 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 52 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.09 1.28 5.97 -2.39 -0.01 1.27 16 54 H 0.09 1.16 6.00 -2.39 -0.01 1.14 16 55 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -74.52 406.67 -3.14 -77.66 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.33 Total: 24.32 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 7.37 Total: 28.06 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -12.80 Total: -139.56 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.06 Total: -35.22 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.52 -3.14 -77.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414305.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.541 kcal (2) G-P(sol) polarization free energy of solvation -74.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds