Wall clock time and date at job start Tue Mar 31 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47143 * 2 1 4 4 N 1.46897 * 109.47546 * 119.99958 * 2 1 3 5 5 C 1.46847 * 111.00066 * 175.00213 * 4 2 1 6 6 C 1.53039 * 109.51947 * 174.16446 * 5 4 2 7 7 C 1.53117 * 109.28209 * 59.17948 * 6 5 4 8 8 N 1.46895 * 109.52164 * 182.44066 * 7 6 5 9 9 C 1.46893 * 111.00462 * 304.29735 * 8 7 6 10 10 C 1.53233 * 109.34533 * 172.74583 * 9 8 7 11 11 N 1.47086 * 108.51807 * 53.83286 * 10 9 8 12 12 C 1.34779 * 120.87721 * 128.79369 * 11 10 9 13 13 O 1.21594 * 119.99519 * 175.02415 * 12 11 10 14 14 N 1.34773 * 120.00333 * 355.02830 * 12 11 10 15 15 C 1.46506 * 120.00025 * 185.08475 * 14 12 11 16 16 C 1.50698 * 109.47242 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00018 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47030 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47209 * 119.99830 * 20 18 16 23 23 H 1.48497 * 109.47087 * 239.99733 * 20 18 16 24 24 C 1.47073 * 118.23742 * 308.81184 * 11 10 9 25 25 C 1.46904 * 110.99987 * 179.97438 * 8 7 6 26 26 C 1.53118 * 109.15905 * 302.34407 * 7 6 5 27 27 C 1.46849 * 110.99617 * 50.79167 * 4 2 1 28 28 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47093 * 299.99541 * 1 2 3 30 30 H 1.09000 * 109.47111 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.47359 * 240.00383 * 2 1 3 32 32 H 1.08992 * 109.47065 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46934 * 300.00388 * 3 2 1 34 34 H 1.08999 * 109.46909 * 59.99520 * 3 2 1 35 35 H 1.08998 * 109.46302 * 54.14677 * 5 4 2 36 36 H 1.08997 * 109.46129 * 294.17554 * 5 4 2 37 37 H 1.09002 * 109.50358 * 179.12170 * 6 5 4 38 38 H 1.08998 * 109.50182 * 299.23223 * 6 5 4 39 39 H 1.08994 * 109.52723 * 62.24616 * 7 6 5 40 40 H 1.09005 * 109.49504 * 292.71040 * 9 8 7 41 41 H 1.09007 * 109.48841 * 52.78813 * 9 8 7 42 42 H 1.09000 * 109.63465 * 294.12720 * 10 9 8 43 43 H 1.08997 * 109.62968 * 173.54215 * 10 9 8 44 44 H 0.96998 * 120.00054 * 5.07378 * 14 12 11 45 45 H 1.08996 * 109.46579 * 299.99675 * 15 14 12 46 46 H 1.08998 * 109.46927 * 59.99578 * 15 14 12 47 47 H 0.96995 * 120.00121 * 180.02562 * 19 18 16 48 48 H 1.08998 * 109.63014 * 291.47718 * 24 11 10 49 49 H 1.08998 * 109.62528 * 170.89152 * 24 11 10 50 50 H 1.08999 * 109.49402 * 307.21323 * 25 8 7 51 51 H 1.09001 * 109.49277 * 67.29265 * 25 8 7 52 52 H 1.09006 * 109.50199 * 297.71434 * 26 7 6 53 53 H 1.09003 * 109.50557 * 177.59535 * 26 7 6 54 54 H 1.09000 * 109.46453 * 305.85549 * 27 4 2 55 55 H 1.08996 * 109.46333 * 65.82839 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4828 -0.8163 1.1750 6 6 3.9679 -1.4089 2.5000 7 6 3.3241 -2.7828 2.7053 8 7 3.7404 -3.3311 4.0029 9 6 5.2047 -3.3863 4.1058 10 6 5.5986 -3.7898 5.5306 11 7 4.9037 -5.0407 5.8709 12 6 5.5820 -6.0980 6.3593 13 8 4.9812 -7.0916 6.7201 14 7 6.9261 -6.0538 6.4480 15 6 7.6716 -7.2411 6.8732 16 6 9.1460 -6.9299 6.8882 17 1 9.4931 -5.9462 6.6084 18 6 10.0519 -7.9013 7.2580 19 7 9.6292 -9.0993 7.5981 20 14 11.8795 -7.5153 7.2772 21 1 12.0924 -6.1071 6.8564 22 1 12.4117 -7.7080 8.6501 23 1 12.5872 -8.4239 6.3399 24 6 3.4492 -5.1072 5.6637 25 6 3.1395 -4.6516 4.2338 26 6 1.8005 -2.6329 2.6782 27 6 1.3781 -2.0049 1.3481 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.9283 0.1682 1.0327 36 1 3.7782 -1.4705 0.3548 37 1 5.0525 -1.5152 2.4757 38 1 3.6849 -0.7482 3.3194 39 1 3.6381 -3.4552 1.9070 40 1 5.5916 -4.1211 3.3996 41 1 5.6226 -2.4060 3.8767 42 1 5.3037 -3.0058 6.2281 43 1 6.6764 -3.9438 5.5829 44 1 7.3999 -5.2360 6.2300 45 1 7.3512 -7.5322 7.8736 46 1 7.4802 -8.0586 6.1781 47 1 10.2665 -9.7826 7.8587 48 1 2.9477 -4.4497 6.3739 49 1 3.1059 -6.1322 5.8038 50 1 2.0599 -4.5887 4.0976 51 1 3.5546 -5.3689 3.5259 52 1 1.4833 -1.9915 3.5005 53 1 1.3364 -3.6138 2.7812 54 1 0.2950 -1.8837 1.3314 55 1 1.6835 -2.6536 0.5271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426437112.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:24 Heat of formation + Delta-G solvation = -33.518119 kcal Electronic energy + Delta-G solvation = -30432.331735 eV Core-core repulsion = 26503.353346 eV Total energy + Delta-G solvation = -3928.978389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49655 -40.56324 -38.96707 -36.50553 -36.21427 -34.56440 -34.00997 -32.65931 -31.63428 -30.91068 -29.31353 -28.10793 -27.52306 -25.28459 -24.71512 -24.03894 -23.04335 -22.35108 -21.13615 -20.67935 -20.58574 -19.54797 -18.13594 -17.58327 -17.35458 -16.68415 -16.63545 -16.27169 -16.05715 -15.80066 -15.65786 -15.37216 -15.21915 -15.17877 -14.86660 -14.66279 -14.29806 -14.20278 -14.01153 -13.80052 -13.57732 -13.34851 -13.01243 -12.98494 -12.85861 -12.75394 -12.63358 -12.52446 -12.37297 -12.26864 -12.16893 -12.06509 -11.98952 -11.80055 -11.75948 -11.45546 -11.35566 -11.14311 -10.90515 -10.82339 -10.10147 -9.57366 -9.23290 -9.22063 -8.28953 -6.45691 1.42930 1.44832 1.57822 1.73647 2.17799 2.38025 2.77780 2.92099 3.05933 3.14640 3.68947 3.82956 3.88961 3.96945 4.04771 4.08065 4.17400 4.21435 4.25995 4.34463 4.37128 4.44946 4.46717 4.48849 4.57153 4.63461 4.67951 4.70459 4.81856 4.82346 4.83738 4.92383 4.95701 4.97735 5.02382 5.03421 5.05829 5.06941 5.21784 5.25529 5.26748 5.35146 5.37796 5.45671 5.47863 5.53357 5.69865 5.83641 5.99158 6.02513 6.17642 6.20666 6.23160 6.65780 7.15415 7.24472 7.66915 8.83693 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.001993 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.325474 B =14045.757116 C =15008.499410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.141 4.141 4 N -0.538 5.538 5 C 0.057 3.943 6 C -0.104 4.104 7 C 0.087 3.913 8 N -0.527 5.527 9 C 0.044 3.956 10 C 0.114 3.886 11 N -0.631 5.631 12 C 0.693 3.307 13 O -0.648 6.648 14 N -0.724 5.724 15 C 0.285 3.715 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.987 3.013 21 H -0.252 1.252 22 H -0.278 1.278 23 H -0.279 1.279 24 C 0.135 3.865 25 C 0.050 3.950 26 C -0.104 4.104 27 C 0.055 3.945 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.402 0.598 45 H -0.015 1.015 46 H -0.016 1.016 47 H 0.269 0.731 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.111 0.889 51 H 0.019 0.981 52 H 0.077 0.923 53 H 0.071 0.929 54 H 0.091 0.909 55 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 24.289 -17.394 34.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.198 4.198 4 N -0.264 5.264 5 C -0.071 4.071 6 C -0.142 4.142 7 C -0.021 4.021 8 N -0.251 5.251 9 C -0.085 4.085 10 C -0.009 4.009 11 N -0.369 5.369 12 C 0.394 3.606 13 O -0.531 6.531 14 N -0.379 5.379 15 C 0.162 3.838 16 C -0.591 4.591 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.810 3.190 21 H -0.175 1.175 22 H -0.204 1.204 23 H -0.204 1.204 24 C 0.011 3.989 25 C -0.079 4.079 26 C -0.142 4.142 27 C -0.073 4.073 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.240 0.760 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.089 0.911 50 H 0.129 0.871 51 H 0.037 0.963 52 H 0.096 0.904 53 H 0.089 0.911 54 H 0.110 0.890 55 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -17.190 23.990 -16.320 33.725 hybrid contribution 1.564 -1.487 -1.157 2.448 sum -15.626 22.503 -17.477 32.496 Atomic orbital electron populations 1.21936 0.93663 1.02183 1.02636 1.21673 0.96193 0.95445 0.90243 1.21833 1.00997 0.94637 1.02379 1.62049 1.05583 1.19727 1.39023 1.22105 0.87878 1.00875 0.96230 1.21651 0.99717 0.94942 0.97908 1.21686 0.96415 0.95651 0.88315 1.62018 1.08030 1.23102 1.31993 1.22540 0.88425 1.02276 0.95249 1.21924 0.96905 0.85167 0.96883 1.47396 1.08784 1.12811 1.67955 1.16252 0.82412 0.83181 0.78768 1.90815 1.69205 1.35027 1.58094 1.45465 1.04117 1.16813 1.71542 1.18422 0.90567 0.82451 0.92378 1.21603 0.90517 0.99567 1.47461 0.89862 1.26085 1.05325 0.94319 0.93905 1.70154 1.36988 1.04599 1.45158 0.85076 0.76944 0.79133 0.77829 1.17527 1.20411 1.20445 1.21578 0.78540 1.01889 0.96850 1.22478 1.01395 0.89140 0.94901 1.21627 0.93619 1.00906 0.98017 1.22160 1.00256 0.88769 0.96110 0.92348 0.91986 0.91284 0.94907 0.92634 0.91382 0.92170 0.89384 0.95766 0.90733 0.90305 0.95751 0.95861 0.86626 0.89065 0.89725 0.76036 0.99696 0.99837 0.92232 0.89832 0.91055 0.87121 0.96252 0.90427 0.91072 0.89043 0.95789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.65 71.98 0.62 -0.73 16 2 C 0.07 0.81 2.69 44.92 0.12 0.93 16 3 C -0.14 -1.34 9.10 71.98 0.66 -0.68 16 4 N -0.54 -7.07 4.52 -871.10 -3.94 -11.01 16 5 C 0.06 0.74 5.29 86.33 0.46 1.20 16 6 C -0.10 -1.42 4.94 30.65 0.15 -1.27 16 7 C 0.09 1.40 2.01 44.99 0.09 1.50 16 8 N -0.53 -9.99 4.50 -869.58 -3.91 -13.90 16 9 C 0.04 0.86 5.31 86.38 0.46 1.32 16 10 C 0.11 2.70 6.59 86.35 0.57 3.27 16 11 N -0.63 -20.62 3.01 -835.95 -2.52 -23.13 16 12 C 0.69 31.02 8.31 179.05 1.49 32.51 16 13 O -0.65 -35.27 15.83 -4.01 -0.06 -35.33 16 14 N -0.72 -33.02 5.46 -482.29 -2.63 -35.66 16 15 C 0.29 16.33 5.43 85.63 0.47 16.79 16 16 C -0.55 -30.73 9.28 25.60 0.24 -30.50 16 17 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 20 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 24 C 0.13 3.73 6.58 86.35 0.57 4.30 16 25 C 0.05 1.07 5.40 86.38 0.47 1.54 16 26 C -0.10 -1.46 5.09 30.65 0.16 -1.31 16 27 C 0.06 0.71 5.01 86.33 0.43 1.15 16 28 H 0.06 0.53 6.19 -2.38 -0.01 0.51 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.03 0.40 8.13 -2.39 -0.02 0.38 16 32 H 0.05 0.52 6.40 -2.39 -0.02 0.51 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 1.00 6.18 -2.39 -0.01 0.98 16 36 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.07 0.93 6.34 -2.39 -0.02 0.92 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.12 1.70 5.89 -2.38 -0.01 1.69 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.99 5.63 -2.39 -0.01 1.98 16 44 H 0.40 15.32 5.82 -92.71 -0.54 14.78 16 45 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 47 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.07 2.32 7.09 -2.39 -0.02 2.31 16 50 H 0.11 1.89 6.01 -2.39 -0.01 1.88 16 51 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 53 H 0.07 0.95 6.40 -2.39 -0.02 0.93 16 54 H 0.09 1.03 5.83 -2.39 -0.01 1.02 16 55 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -73.77 406.58 -3.02 -76.80 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.33 Total: 23.53 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 7.40 Total: 30.65 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -12.72 Total: -140.31 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.06 Total: -35.33 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.77 -3.02 -76.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426437112.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.279 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds